PDB Short entry for 2KOX HEADER SIGNALING PROTEIN 02-OCT-09 2KOX TITLE NMR RESIDUAL DIPOLAR COUPLINGS IDENTIFY LONG RANGE CORRELATED MOTIONS TITLE 2 IN THE BACKBONE OF THE PROTEIN UBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR KEYWDS UBIQUITIN, RESIDUAL DIPOLAR COUPLING, SIMULATED ANNEALING, ISOPEPTIDE KEYWDS 2 BOND, NUCLEUS, PHOSPHOPROTEIN, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 640 AUTHOR R.B.FENWICK,B.RICHTER,D.LEE,K.F.A.WALTER,D.MILOVANOVIC,S.BECKER, AUTHOR 2 N.A.LAKOMEK,C.GRIESINGER,X.SALVATELLA REVDAT 2 13-JUL-11 2KOX 1 JRNL REVDAT 1 08-JUN-11 2KOX 0 JRNL AUTH R.B.FENWICK,S.ESTEBAN-MARTIN,B.RICHTER,D.LEE,K.F.A.WALTER, JRNL AUTH 2 D.MILOVANOVIC,S.BECKER,N.A.LAKOMEK,C.GRIESINGER,X.SALVATELLA JRNL TITL WEAK LONG-RANGE CORRELATED MOTIONS IN A SURFACE PATCH OF JRNL TITL 2 UBIQUITIN INVOLVED IN MOLECULAR RECOGNITION JRNL REF J.AM.CHEM.SOC. 2011 JRNL REFN ESSN 1520-5126 JRNL PMID 21634390 JRNL DOI 10.1021/JA200461N REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CHARMM C34B1 REMARK 3 AUTHORS : B.R.BROOKS ET AL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DYNAMIC STUDY REMARK 4 REMARK 4 2KOX COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-OCT-09. REMARK 100 THE RCSB ID CODE IS RCSB101390. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : [U-100% 13C; U-100% 15N] REMARK 210 UBIQUITIN-1, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CHARMM C34B1 REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 640 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 640 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H1 MET A 1 OE2 GLU A 16 1.54 REMARK 500 HH21 ARG A 72 O GLY A 76 1.58 REMARK 500 O GLN A 62 HG SER A 65 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 13 GLU A 34 CD GLU A 34 OE1 0.072 REMARK 500 19 ARG A 72 CD ARG A 72 NE 0.136 REMARK 500 21 TYR A 59 CG TYR A 59 CD1 0.095 REMARK 500 25 PHE A 45 CG PHE A 45 CD1 0.091 REMARK 500 27 TYR A 59 CA TYR A 59 CB 0.137 REMARK 500 30 ARG A 42 CD ARG A 42 NE 0.102 REMARK 500 30 SER A 57 CA SER A 57 CB 0.105 REMARK 500 31 SER A 65 CA SER A 65 CB 0.100 REMARK 500 37 SER A 65 CA SER A 65 CB 0.106 REMARK 500 47 TYR A 59 CG TYR A 59 CD2 0.086 REMARK 500 54 GLU A 64 CD GLU A 64 OE2 0.076 REMARK 500 57 TYR A 59 CG TYR A 59 CD2 0.086 REMARK 500 59 GLU A 18 CD GLU A 18 OE1 0.074 REMARK 500 66 GLU A 16 CD GLU A 16 OE2 0.069 REMARK 500 68 SER A 57 CA SER A 57 CB 0.094 REMARK 500 68 TYR A 59 CE1 TYR A 59 CZ 0.079 REMARK 500 74 SER A 57 CA SER A 57 CB 0.109 REMARK 500 76 ARG A 42 CD ARG A 42 NE 0.116 REMARK 500 79 ARG A 54 CD ARG A 54 NE 0.107 REMARK 500 90 SER A 20 CA SER A 20 CB 0.112 REMARK 500 91 TYR A 59 CZ TYR A 59 CE2 0.079 REMARK 500 96 TYR A 59 CG TYR A 59 CD1 0.100 REMARK 500 103 TYR A 59 CG TYR A 59 CD2 0.085 REMARK 500 107 GLY A 76 CA GLY A 76 C 0.100 REMARK 500 115 GLU A 18 CB GLU A 18 CG 0.151 REMARK 500 116 TYR A 59 CG TYR A 59 CD2 0.085 REMARK 500 123 PHE A 45 CG PHE A 45 CD2 0.105 REMARK 500 124 ARG A 72 CD ARG A 72 NE 0.124 REMARK 500 127 TYR A 59 CZ TYR A 59 CE2 0.089 REMARK 500 130 ARG A 54 CD ARG A 54 NE 0.122 REMARK 500 139 PHE A 45 CZ PHE A 45 CE2 0.125 REMARK 500 140 GLY A 53 CA GLY A 53 C -0.098 REMARK 500 144 SER A 57 CA SER A 57 CB 0.096 REMARK 500 146 ARG A 54 CD ARG A 54 NE 0.105 REMARK 500 151 TYR A 59 CG TYR A 59 CD1 0.105 REMARK 500 154 PHE A 45 CG PHE A 45 CD2 0.096 REMARK 500 154 SER A 57 CA SER A 57 CB 0.100 REMARK 500 167 HIS A 68 CG HIS A 68 CD2 0.054 REMARK 500 170 SER A 65 CA SER A 65 CB 0.095 REMARK 500 171 TYR A 59 CZ TYR A 59 CE2 0.084 REMARK 500 173 ARG A 42 CD ARG A 42 NE 0.120 REMARK 500 176 HIS A 68 CG HIS A 68 CD2 0.056 REMARK 500 187 TYR A 59 CD1 TYR A 59 CE1 0.101 REMARK 500 190 VAL A 70 CB VAL A 70 CG1 0.144 REMARK 500 193 TYR A 59 CZ TYR A 59 CE2 0.084 REMARK 500 200 ARG A 74 CD ARG A 74 NE 0.108 REMARK 500 204 SER A 20 N SER A 20 CA -0.121 REMARK 500 204 ARG A 74 CD ARG A 74 NE 0.102 REMARK 500 206 GLU A 18 CG GLU A 18 CD -0.100 REMARK 500 207 GLY A 47 CA GLY A 47 C -0.108 REMARK 500 REMARK 500 THIS ENTRY HAS 172 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 PRO A 19 N - CD - CG ANGL. DEV. = 9.6 DEGREES REMARK 500 1 ARG A 42 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 1 PHE A 45 CB - CG - CD1 ANGL. DEV. = -4.4 DEGREES REMARK 500 1 ARG A 72 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 2 ARG A 54 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 2 ARG A 54 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 2 TYR A 59 CB - CG - CD2 ANGL. DEV. = -5.3 DEGREES REMARK 500 2 ARG A 72 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 2 ARG A 74 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 3 PHE A 4 CB - CG - CD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 3 ARG A 42 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 3 ARG A 54 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 3 ASP A 58 CB - CG - OD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 3 TYR A 59 CB - CG - CD2 ANGL. DEV. = 3.7 DEGREES REMARK 500 3 TYR A 59 CB - CG - CD1 ANGL. DEV. = -4.8 DEGREES REMARK 500 3 VAL A 70 CG1 - CB - CG2 ANGL. DEV. = -9.8 DEGREES REMARK 500 3 ARG A 72 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 4 ARG A 42 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 4 ARG A 72 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 4 ARG A 74 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 5 ASP A 32 CB - CG - OD2 ANGL. DEV. = 9.6 DEGREES REMARK 500 5 PRO A 38 C - N - CA ANGL. DEV. = 10.2 DEGREES REMARK 500 5 ASP A 39 CB - CG - OD1 ANGL. DEV. = 9.4 DEGREES REMARK 500 5 ARG A 42 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 5 ARG A 42 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 5 ARG A 54 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 5 TYR A 59 CB - CG - CD1 ANGL. DEV. = -3.7 DEGREES REMARK 500 5 TYR A 59 O - C - N ANGL. DEV. = -9.6 DEGREES REMARK 500 6 MET A 1 CG - SD - CE ANGL. DEV. = -9.8 DEGREES REMARK 500 6 ARG A 42 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 6 ARG A 54 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 6 ARG A 72 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 7 ARG A 42 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 7 ARG A 54 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 7 ARG A 54 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 7 GLU A 64 N - CA - CB ANGL. DEV. = 11.3 DEGREES REMARK 500 7 ARG A 72 NE - CZ - NH1 ANGL. DEV. = 6.2 DEGREES REMARK 500 8 ARG A 42 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 8 ARG A 72 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 8 ARG A 74 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 9 ARG A 42 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 9 ARG A 54 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 9 VAL A 70 O - C - N ANGL. DEV. = -9.9 DEGREES REMARK 500 9 ARG A 72 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 9 ARG A 74 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 10 ARG A 42 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 10 ARG A 72 CD - NE - CZ ANGL. DEV. = 9.4 DEGREES REMARK 500 10 ARG A 72 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 10 ARG A 74 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 11 PHE A 4 CB - CG - CD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 3281 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 2 PRO A 37 152.13 -47.54 REMARK 500 2 ASP A 52 -59.65 -29.01 REMARK 500 4 THR A 7 174.60 -54.82 REMARK 500 6 ALA A 46 35.84 77.43 REMARK 500 7 LYS A 11 145.26 155.95 REMARK 500 7 LEU A 50 163.42 52.38 REMARK 500 10 LYS A 11 137.87 167.72 REMARK 500 10 ALA A 46 65.41 23.07 REMARK 500 10 ASN A 60 37.20 75.10 REMARK 500 10 LYS A 63 128.62 -34.92 REMARK 500 10 GLU A 64 15.11 54.65 REMARK 500 11 ALA A 46 41.49 76.81 REMARK 500 11 LYS A 63 134.20 -39.34 REMARK 500 12 PRO A 37 132.54 -39.23 REMARK 500 13 PRO A 19 -19.95 -49.37 REMARK 500 13 PRO A 37 130.02 -29.52 REMARK 500 15 THR A 9 37.13 -94.19 REMARK 500 21 ARG A 72 33.28 -82.21 REMARK 500 25 LYS A 11 134.28 88.86 REMARK 500 26 LYS A 63 123.74 -39.20 REMARK 500 29 LYS A 11 125.92 137.72 REMARK 500 29 PRO A 37 126.95 -32.03 REMARK 500 29 LYS A 63 148.42 -36.72 REMARK 500 29 GLU A 64 -0.13 64.00 REMARK 500 34 PRO A 37 152.94 -46.74 REMARK 500 34 ASN A 60 41.91 70.56 REMARK 500 34 GLU A 64 1.39 56.08 REMARK 500 36 LEU A 50 157.48 53.64 REMARK 500 38 THR A 7 -178.86 -59.08 REMARK 500 42 LYS A 63 114.76 -38.24 REMARK 500 43 ALA A 46 35.69 70.57 REMARK 500 43 LYS A 63 134.51 -32.82 REMARK 500 45 LYS A 63 128.13 -32.37 REMARK 500 46 LEU A 73 143.31 -32.57 REMARK 500 47 ASN A 60 39.10 70.80 REMARK 500 48 GLU A 64 22.20 83.15 REMARK 500 50 LYS A 11 134.10 174.25 REMARK 500 50 PRO A 37 135.82 -36.99 REMARK 500 50 GLU A 64 17.93 57.34 REMARK 500 52 PRO A 38 -37.31 -37.30 REMARK 500 53 GLN A 62 -167.10 -109.56 REMARK 500 54 LYS A 63 130.00 -39.93 REMARK 500 56 ASP A 52 -50.14 -28.50 REMARK 500 56 ARG A 72 127.78 -32.13 REMARK 500 57 LYS A 63 134.20 -31.83 REMARK 500 58 GLU A 64 15.88 82.24 REMARK 500 61 PRO A 37 132.94 -31.77 REMARK 500 62 ARG A 72 35.86 -146.71 REMARK 500 63 LYS A 63 123.72 -34.89 REMARK 500 65 PRO A 38 -19.76 -49.57 REMARK 500 REMARK 500 THIS ENTRY HAS 614 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 9 GLY A 10 9 149.56 REMARK 500 GLU A 51 ASP A 52 22 -149.61 REMARK 500 VAL A 17 GLU A 18 48 147.95 REMARK 500 LEU A 73 ARG A 74 69 -145.05 REMARK 500 THR A 9 GLY A 10 85 149.91 REMARK 500 GLN A 49 LEU A 50 114 -145.74 REMARK 500 GLN A 41 ARG A 42 181 149.01 REMARK 500 LEU A 8 THR A 9 230 149.14 REMARK 500 LYS A 33 GLU A 34 241 -149.42 REMARK 500 THR A 9 GLY A 10 253 144.64 REMARK 500 GLU A 51 ASP A 52 264 -148.08 REMARK 500 VAL A 17 GLU A 18 287 148.85 REMARK 500 SER A 20 ASP A 21 313 148.10 REMARK 500 GLU A 51 ASP A 52 319 -148.09 REMARK 500 ILE A 61 GLN A 62 323 -149.69 REMARK 500 THR A 9 GLY A 10 333 140.49 REMARK 500 GLU A 51 ASP A 52 333 -145.30 REMARK 500 GLN A 41 ARG A 42 385 148.00 REMARK 500 PRO A 37 PRO A 38 391 -149.20 REMARK 500 GLU A 34 GLY A 35 393 149.02 REMARK 500 GLN A 41 ARG A 42 401 148.18 REMARK 500 THR A 9 GLY A 10 406 149.74 REMARK 500 GLU A 51 ASP A 52 406 -149.32 REMARK 500 THR A 9 GLY A 10 463 148.85 REMARK 500 GLU A 16 VAL A 17 466 -147.16 REMARK 500 GLU A 51 ASP A 52 513 -148.63 REMARK 500 LEU A 71 ARG A 72 515 -148.85 REMARK 500 VAL A 17 GLU A 18 592 147.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 59 0.07 SIDE CHAIN REMARK 500 1 HIS A 68 0.07 SIDE CHAIN REMARK 500 2 ARG A 42 0.09 SIDE CHAIN REMARK 500 2 ARG A 72 0.11 SIDE CHAIN REMARK 500 3 PHE A 45 0.06 SIDE CHAIN REMARK 500 6 ARG A 54 0.18 SIDE CHAIN REMARK 500 7 ARG A 54 0.12 SIDE CHAIN REMARK 500 8 TYR A 59 0.08 SIDE CHAIN REMARK 500 10 TYR A 59 0.08 SIDE CHAIN REMARK 500 11 ARG A 72 0.08 SIDE CHAIN REMARK 500 12 ARG A 54 0.12 SIDE CHAIN REMARK 500 12 TYR A 59 0.07 SIDE CHAIN REMARK 500 13 ARG A 42 0.11 SIDE CHAIN REMARK 500 13 ARG A 74 0.07 SIDE CHAIN REMARK 500 14 ARG A 54 0.09 SIDE CHAIN REMARK 500 15 ARG A 74 0.14 SIDE CHAIN REMARK 500 16 ARG A 42 0.14 SIDE CHAIN REMARK 500 16 TYR A 59 0.08 SIDE CHAIN REMARK 500 17 TYR A 59 0.10 SIDE CHAIN REMARK 500 18 ARG A 42 0.12 SIDE CHAIN REMARK 500 19 ARG A 74 0.10 SIDE CHAIN REMARK 500 21 ARG A 42 0.13 SIDE CHAIN REMARK 500 21 ARG A 72 0.15 SIDE CHAIN REMARK 500 22 ARG A 54 0.09 SIDE CHAIN REMARK 500 22 ARG A 74 0.12 SIDE CHAIN REMARK 500 24 TYR A 59 0.13 SIDE CHAIN REMARK 500 25 ARG A 54 0.08 SIDE CHAIN REMARK 500 26 ARG A 42 0.15 SIDE CHAIN REMARK 500 26 ARG A 72 0.13 SIDE CHAIN REMARK 500 27 ARG A 74 0.16 SIDE CHAIN REMARK 500 29 ARG A 74 0.08 SIDE CHAIN REMARK 500 31 ARG A 74 0.09 SIDE CHAIN REMARK 500 32 ARG A 42 0.09 SIDE CHAIN REMARK 500 33 ARG A 42 0.10 SIDE CHAIN REMARK 500 33 HIS A 68 0.07 SIDE CHAIN REMARK 500 34 ARG A 74 0.07 SIDE CHAIN REMARK 500 35 TYR A 59 0.07 SIDE CHAIN REMARK 500 36 ARG A 42 0.23 SIDE CHAIN REMARK 500 37 ARG A 54 0.08 SIDE CHAIN REMARK 500 39 ARG A 74 0.09 SIDE CHAIN REMARK 500 40 ARG A 42 0.15 SIDE CHAIN REMARK 500 40 ARG A 54 0.17 SIDE CHAIN REMARK 500 40 ARG A 72 0.11 SIDE CHAIN REMARK 500 42 ARG A 72 0.08 SIDE CHAIN REMARK 500 43 ARG A 74 0.09 SIDE CHAIN REMARK 500 47 TYR A 59 0.07 SIDE CHAIN REMARK 500 48 ARG A 54 0.20 SIDE CHAIN REMARK 500 50 ARG A 72 0.08 SIDE CHAIN REMARK 500 50 ARG A 74 0.08 SIDE CHAIN REMARK 500 51 ARG A 42 0.10 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 747 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 280 SER A 20 -10.84 REMARK 500 511 ASP A 32 -10.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 2 THR A 55 24.8 L L OUTSIDE RANGE REMARK 500 4 THR A 7 23.0 L L OUTSIDE RANGE REMARK 500 4 THR A 22 22.9 L L OUTSIDE RANGE REMARK 500 4 LYS A 63 24.1 L L OUTSIDE RANGE REMARK 500 5 THR A 9 24.5 L L OUTSIDE RANGE REMARK 500 5 ILE A 61 24.4 L L OUTSIDE RANGE REMARK 500 5 LYS A 63 23.1 L L OUTSIDE RANGE REMARK 500 6 ASN A 60 24.8 L L OUTSIDE RANGE REMARK 500 8 ASP A 52 23.3 L L OUTSIDE RANGE REMARK 500 8 HIS A 68 24.1 L L OUTSIDE RANGE REMARK 500 10 ARG A 74 24.2 L L OUTSIDE RANGE REMARK 500 11 LEU A 71 23.1 L L OUTSIDE RANGE REMARK 500 12 THR A 22 24.9 L L OUTSIDE RANGE REMARK 500 16 ASN A 60 22.1 L L OUTSIDE RANGE REMARK 500 18 ASP A 21 22.9 L L OUTSIDE RANGE REMARK 500 19 ARG A 54 23.2 L L OUTSIDE RANGE REMARK 500 22 LYS A 63 24.9 L L OUTSIDE RANGE REMARK 500 23 THR A 66 24.6 L L OUTSIDE RANGE REMARK 500 25 ALA A 46 21.4 L L OUTSIDE RANGE REMARK 500 26 ASN A 60 24.8 L L OUTSIDE RANGE REMARK 500 26 ARG A 74 24.3 L L OUTSIDE RANGE REMARK 500 28 THR A 7 22.8 L L OUTSIDE RANGE REMARK 500 30 SER A 65 23.6 L L OUTSIDE RANGE REMARK 500 31 THR A 22 24.0 L L OUTSIDE RANGE REMARK 500 32 ARG A 72 24.8 L L OUTSIDE RANGE REMARK 500 34 ASP A 52 23.8 L L OUTSIDE RANGE REMARK 500 34 GLU A 64 23.2 L L OUTSIDE RANGE REMARK 500 38 THR A 7 24.8 L L OUTSIDE RANGE REMARK 500 38 SER A 57 24.8 L L OUTSIDE RANGE REMARK 500 44 ALA A 46 24.6 L L OUTSIDE RANGE REMARK 500 44 GLU A 64 22.6 L L OUTSIDE RANGE REMARK 500 44 ARG A 74 22.1 L L OUTSIDE RANGE REMARK 500 46 ASN A 60 24.7 L L OUTSIDE RANGE REMARK 500 47 THR A 55 24.5 L L OUTSIDE RANGE REMARK 500 48 GLU A 64 23.3 L L OUTSIDE RANGE REMARK 500 49 LYS A 63 24.9 L L OUTSIDE RANGE REMARK 500 53 THR A 55 24.4 L L OUTSIDE RANGE REMARK 500 54 THR A 7 24.1 L L OUTSIDE RANGE REMARK 500 55 ASP A 52 23.7 L L OUTSIDE RANGE REMARK 500 57 THR A 55 24.4 L L OUTSIDE RANGE REMARK 500 58 LEU A 8 24.8 L L OUTSIDE RANGE REMARK 500 58 ILE A 30 24.3 L L OUTSIDE RANGE REMARK 500 63 THR A 22 23.9 L L OUTSIDE RANGE REMARK 500 65 ASN A 60 23.8 L L OUTSIDE RANGE REMARK 500 68 ASN A 60 22.5 L L OUTSIDE RANGE REMARK 500 73 ILE A 36 24.3 L L OUTSIDE RANGE REMARK 500 76 MET A 1 23.2 L L OUTSIDE RANGE REMARK 500 76 GLU A 64 24.4 L L OUTSIDE RANGE REMARK 500 77 GLN A 41 23.8 L L OUTSIDE RANGE REMARK 500 77 ALA A 46 22.9 L L OUTSIDE RANGE REMARK 500 REMARK 500 THIS ENTRY HAS 484 CHIRALITY DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2K39 RELATED DB: PDB REMARK 900 RDC RESTRAINT DATA REMARK 900 RELATED ID: 1D3Z RELATED DB: PDB REMARK 900 NOE RESTRAINT DATA REMARK 900 RELATED ID: 2NR2 RELATED DB: PDB REMARK 900 NOE RESTRAINT METHOD REMARK 900 RELATED ID: 1UBQ RELATED DB: PDB REMARK 900 STARTING STRUCTURE FOR REFINEMENT DBREF 2KOX A 1 76 UNP P62988 UBIQ_HUMAN 1 76 SEQRES 1 A 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 A 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 A 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 A 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 A 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 A 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY HELIX 1 1 THR A 22 GLY A 35 1 14 HELIX 2 2 PRO A 37 ASP A 39 5 3 SHEET 1 A 5 THR A 12 GLU A 16 0 SHEET 2 A 5 GLN A 2 THR A 7 -1 N VAL A 5 O ILE A 13 SHEET 3 A 5 THR A 66 LEU A 71 1 O LEU A 69 N LYS A 6 SHEET 4 A 5 GLN A 41 PHE A 45 -1 N ARG A 42 O VAL A 70 SHEET 5 A 5 LYS A 48 GLN A 49 -1 O LYS A 48 N PHE A 45 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000