PDB Short entry for 2KOY HEADER METAL TRANSPORT 03-OCT-09 2KOY TITLE STRUCTURE OF THE E1064A MUTANT OF THE N-DOMAIN OF WILSON DISEASE TITLE 2 ASSOCIATED PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPPER-TRANSPORTING ATPASE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-DOMAIN; COMPND 5 SYNONYM: COPPER PUMP 2, WILSON DISEASE-ASSOCIATED PROTEIN, WND/140 COMPND 6 KDA; COMPND 7 EC: 3.6.3.4; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ATP7B, PWD, WC1, WND; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PTYB12 KEYWDS ATP7B, WILSON DISEASE, ATPASE, COPPER TRANSPORT, ATP BINDING, ATP- KEYWDS 2 BINDING, DISEASE MUTATION, GOLGI APPARATUS, HYDROLASE, ION KEYWDS 3 TRANSPORT, MAGNESIUM, MEMBRANE, METAL-BINDING, MITOCHONDRION, KEYWDS 4 NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, TRANSMEMBRANE, TRANSPORT, METAL KEYWDS 5 TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR O.Y.DMITRIEV REVDAT 3 13-OCT-21 2KOY 1 SEQADV REVDAT 2 13-MAR-19 2KOY 1 JRNL REVDAT 1 15-DEC-10 2KOY 0 JRNL AUTH O.Y.DMITRIEV,A.BHATTACHARJEE,S.NOKHRIN,E.M.UHLEMANN, JRNL AUTH 2 S.LUTSENKO JRNL TITL DIFFERENCE IN STABILITY OF THE N-DOMAIN UNDERLIES DISTINCT JRNL TITL 2 INTRACELLULAR PROPERTIES OF THE E1064A AND H1069Q MUTANTS OF JRNL TITL 3 COPPER-TRANSPORTING ATPASE ATP7B. JRNL REF J. BIOL. CHEM. V. 286 16355 2011 JRNL REFN ESSN 1083-351X JRNL PMID 21398519 JRNL DOI 10.1074/JBC.M110.198101 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, TALOS REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 CORNILESCU, DELAGLIO AND BAX (TALOS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KOY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000101391. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 50 MM SODIUM PHOSPHATE, 5 MM REMARK 210 DTT, 0.3 MM DSS, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCA; 3D HN(COCA)CB; 3D HNCACB; REMARK 210 3D C(CO)NH; 3D H(CCO)NH; 3D 1H- REMARK 210 15N TOCSY; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 2007 REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 14 -64.39 -104.95 REMARK 500 1 ASP A 16 -176.47 -60.96 REMARK 500 1 PRO A 21 -172.02 -69.73 REMARK 500 1 THR A 61 -62.22 -106.14 REMARK 500 1 PRO A 67 85.65 -69.83 REMARK 500 1 ILE A 81 -73.69 -86.77 REMARK 500 1 ALA A 84 -39.10 -161.96 REMARK 500 1 ASN A 95 -164.93 -100.59 REMARK 500 1 LEU A 104 -166.47 -169.91 REMARK 500 1 THR A 105 -77.63 -80.26 REMARK 500 1 LEU A 133 105.85 -48.50 REMARK 500 2 MET A 4 30.07 -96.93 REMARK 500 2 LEU A 14 -74.88 -96.71 REMARK 500 2 VAL A 28 -70.67 -49.75 REMARK 500 2 PRO A 67 93.16 -69.71 REMARK 500 2 CYS A 69 -41.40 -137.98 REMARK 500 2 SER A 76 128.37 -170.59 REMARK 500 2 ILE A 81 -71.54 -86.86 REMARK 500 2 ALA A 84 -40.83 -164.17 REMARK 500 2 LEU A 104 106.16 -44.21 REMARK 500 2 THR A 105 -39.76 -134.51 REMARK 500 3 LEU A 14 -77.61 -103.12 REMARK 500 3 PRO A 67 94.03 -69.76 REMARK 500 3 CYS A 69 -41.19 -137.60 REMARK 500 3 ALA A 84 -39.66 -152.89 REMARK 500 3 THR A 105 -75.18 -83.98 REMARK 500 4 LEU A 14 -74.88 -99.89 REMARK 500 4 THR A 61 -62.33 -95.27 REMARK 500 4 CYS A 69 -45.23 -148.44 REMARK 500 4 ALA A 84 -59.56 -131.65 REMARK 500 4 LEU A 104 106.31 -44.09 REMARK 500 4 THR A 105 -41.62 -143.00 REMARK 500 5 ARG A 7 116.09 -161.69 REMARK 500 5 LEU A 14 -77.65 -117.52 REMARK 500 5 PRO A 67 98.69 -69.71 REMARK 500 5 CYS A 69 -43.63 -139.31 REMARK 500 5 ALA A 84 -46.64 -142.60 REMARK 500 5 VAL A 85 74.82 -114.92 REMARK 500 5 ASN A 95 -165.95 -115.43 REMARK 500 5 THR A 105 -75.65 -83.02 REMARK 500 6 MET A 4 31.62 -98.16 REMARK 500 6 LEU A 14 -76.10 -99.21 REMARK 500 6 LEU A 57 146.18 -174.25 REMARK 500 6 PRO A 67 98.83 -69.80 REMARK 500 6 CYS A 69 -43.11 -145.00 REMARK 500 6 ALA A 84 -46.39 -138.98 REMARK 500 6 THR A 105 -74.80 -86.66 REMARK 500 7 LEU A 14 -73.66 -107.62 REMARK 500 7 PRO A 67 93.48 -69.71 REMARK 500 7 CYS A 69 -41.48 -139.31 REMARK 500 REMARK 500 THIS ENTRY HAS 169 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ARF RELATED DB: PDB REMARK 900 WILD TYPE N-DOMAIN DBREF 2KOY A 5 141 UNP P35670 ATP7B_HUMAN 1036 1196 SEQADV 2KOY ALA A 1 UNP P35670 EXPRESSION TAG SEQADV 2KOY GLY A 2 UNP P35670 EXPRESSION TAG SEQADV 2KOY HIS A 3 UNP P35670 EXPRESSION TAG SEQADV 2KOY MET A 4 UNP P35670 EXPRESSION TAG SEQADV 2KOY ALA A 33 UNP P35670 GLU 1064 ENGINEERED MUTATION SEQADV 2KOY A UNP P35670 HIS 1115 DELETION SEQADV 2KOY A UNP P35670 SER 1116 DELETION SEQADV 2KOY A UNP P35670 GLU 1117 DELETION SEQADV 2KOY A UNP P35670 ARG 1118 DELETION SEQADV 2KOY A UNP P35670 PRO 1119 DELETION SEQADV 2KOY A UNP P35670 LEU 1120 DELETION SEQADV 2KOY A UNP P35670 SER 1121 DELETION SEQADV 2KOY A UNP P35670 ALA 1122 DELETION SEQADV 2KOY A UNP P35670 PRO 1123 DELETION SEQADV 2KOY A UNP P35670 ALA 1124 DELETION SEQADV 2KOY A UNP P35670 SER 1125 DELETION SEQADV 2KOY A UNP P35670 HIS 1126 DELETION SEQADV 2KOY A UNP P35670 LEU 1127 DELETION SEQADV 2KOY A UNP P35670 ASN 1128 DELETION SEQADV 2KOY A UNP P35670 GLU 1129 DELETION SEQADV 2KOY A UNP P35670 ALA 1130 DELETION SEQADV 2KOY A UNP P35670 GLY 1131 DELETION SEQADV 2KOY A UNP P35670 SER 1132 DELETION SEQADV 2KOY A UNP P35670 LEU 1133 DELETION SEQADV 2KOY A UNP P35670 PRO 1134 DELETION SEQADV 2KOY A UNP P35670 ALA 1135 DELETION SEQADV 2KOY A UNP P35670 GLU 1136 DELETION SEQADV 2KOY A UNP P35670 LYS 1137 DELETION SEQADV 2KOY A UNP P35670 ASP 1138 DELETION SEQRES 1 A 141 ALA GLY HIS MET VAL PRO ARG VAL MET ARG VAL LEU LEU SEQRES 2 A 141 LEU GLY ASP VAL ALA THR LEU PRO LEU ARG LYS VAL LEU SEQRES 3 A 141 ALA VAL VAL GLY THR ALA ALA ALA SER SER GLU HIS PRO SEQRES 4 A 141 LEU GLY VAL ALA VAL THR LYS TYR CYS LYS GLU GLU LEU SEQRES 5 A 141 GLY THR GLU THR LEU GLY TYR CYS THR ASP PHE GLN ALA SEQRES 6 A 141 VAL PRO GLY CYS GLY ILE GLY CYS LYS VAL SER ASN VAL SEQRES 7 A 141 GLU GLY ILE LEU ALA ALA VAL PRO GLN THR PHE SER VAL SEQRES 8 A 141 LEU ILE GLY ASN ARG GLU TRP LEU ARG ARG ASN GLY LEU SEQRES 9 A 141 THR ILE SER SER ASP VAL SER ASP ALA MET THR ASP HIS SEQRES 10 A 141 GLU MET LYS GLY GLN THR ALA ILE LEU VAL ALA ILE ASP SEQRES 11 A 141 GLY VAL LEU CYS GLY MET ILE ALA ILE ALA ASP HELIX 1 1 PRO A 21 SER A 35 1 15 HELIX 2 2 LEU A 40 GLY A 53 1 14 HELIX 3 3 ASN A 77 ALA A 83 1 7 HELIX 4 4 ASN A 95 LEU A 104 1 10 HELIX 5 5 SER A 107 MET A 119 1 13 SHEET 1 A 6 VAL A 8 LEU A 13 0 SHEET 2 A 6 LEU A 133 ALA A 140 -1 O ALA A 138 N ARG A 10 SHEET 3 A 6 GLN A 122 ILE A 129 -1 N VAL A 127 O GLY A 135 SHEET 4 A 6 SER A 90 GLY A 94 -1 N LEU A 92 O ALA A 128 SHEET 5 A 6 GLY A 70 VAL A 75 -1 N ILE A 71 O ILE A 93 SHEET 6 A 6 CYS A 60 VAL A 66 -1 N THR A 61 O LYS A 74 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000