PDB Short entry for 2KPF HEADER MEMBRANE PROTEIN 13-OCT-09 2KPF TITLE SPATIAL STRUCTURE OF THE DIMERIC TRANSMEMBRANE DOMAIN OF GLYCOPHORIN A TITLE 2 IN BICELLES SOLUTON COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOPHORIN-A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: TRANSMEMBRANE DOMAIN (UNP RESIDUES 80-117); COMPND 5 SYNONYM: PAS-2, SIALOGLYCOPROTEIN ALPHA, MN SIALOGLYCOPROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GYPA, GPA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEMEX KEYWDS GLYCOPHORIN A, TRANSMEMBRANE DIMER, MICELLES, BICELLES, BLOOD GROUP KEYWDS 2 ANTIGEN, CELL MEMBRANE, GLYCOPROTEIN, HOST-VIRUS INTERACTION, KEYWDS 3 MEMBRANE, SIALIC ACID, TRANSMEMBRANE, MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.S.MINEEV,E.V.BOCHAROV,M.V.GONCHARUK,A.S.ARSENIEV,P.E.VOLYNSKY, AUTHOR 2 R.G.EFREMOV REVDAT 2 25-JUL-12 2KPF 1 JRNL VERSN REVDAT 1 22-SEP-10 2KPF 0 JRNL AUTH K.S.MINEEV,E.V.BOCHAROV,P.E.VOLYNSKY,M.V.GONCHARUK, JRNL AUTH 2 E.N.TKACH,Y.S.ERMOLYUK,A.A.SCHULGA,V.V.CHUPIN, JRNL AUTH 3 I.V.MASLENNIKOV,R.G.EFREMOV,A.S.ARSENIEV JRNL TITL DIMERIC STRUCTURE OF THE TRANSMEMBRANE DOMAIN OF GLYCOPHORIN JRNL TITL 2 A IN LIPIDIC AND DETERGENT ENVIRONMENTS. JRNL REF ACTA NATURAE V. 3 90 2011 JRNL REFN ISSN 2075-8251 JRNL PMID 22649687 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CYANA REMARK 4 REMARK 4 2KPF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-OCT-09. REMARK 100 THE RCSB ID CODE IS RCSB101408. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM UNLABELED GLYCOPHORIN A, 1MM REMARK 210 13-C/15-N LABELED GLYCOPHORIN A, REMARK 210 16MM DMPC D-54, 64 MM DHPC D-22, REMARK 210 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCO; 3D HNCA; REMARK 210 3D HN(CO)CA; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY; 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 65 100.29 72.16 REMARK 500 1 ARG A 97 -44.52 76.95 REMARK 500 1 GLN B 63 149.01 62.69 REMARK 500 1 LEU B 64 -175.97 55.11 REMARK 500 1 ALA B 65 33.28 72.10 REMARK 500 1 HIS B 66 84.48 46.66 REMARK 500 1 PHE B 68 170.93 -57.42 REMARK 500 1 SER B 69 -167.21 -164.37 REMARK 500 1 GLU B 72 -64.24 -168.52 REMARK 500 2 ALA A 65 38.63 -155.96 REMARK 500 2 HIS A 67 82.32 -176.07 REMARK 500 2 PHE A 68 175.83 -58.12 REMARK 500 2 ALA B 65 32.15 -164.68 REMARK 500 2 HIS B 66 84.48 46.50 REMARK 500 2 HIS B 67 71.47 -175.83 REMARK 500 2 SER B 69 -167.36 -168.91 REMARK 500 2 GLU B 70 68.19 -156.97 REMARK 500 3 LEU A 64 -170.18 53.48 REMARK 500 3 ALA A 65 31.52 72.29 REMARK 500 3 HIS A 67 35.07 -174.52 REMARK 500 3 ARG A 97 76.46 61.62 REMARK 500 3 VAL B 62 89.16 52.38 REMARK 500 3 ALA B 65 92.29 -165.06 REMARK 500 3 HIS B 66 26.07 -154.93 REMARK 500 3 GLU B 70 65.65 -173.78 REMARK 500 4 GLN A 63 149.13 62.67 REMARK 500 4 ALA A 65 59.33 71.91 REMARK 500 4 HIS A 66 30.49 -155.10 REMARK 500 4 HIS A 67 114.97 -175.59 REMARK 500 4 SER A 69 -169.32 -168.02 REMARK 500 4 PRO A 71 99.55 -69.77 REMARK 500 4 GLU A 72 -49.93 -164.80 REMARK 500 4 VAL B 62 106.17 63.64 REMARK 500 4 ALA B 65 93.40 -164.96 REMARK 500 4 HIS B 67 35.21 -179.53 REMARK 500 4 PHE B 68 170.24 -54.38 REMARK 500 4 SER B 69 174.89 -56.78 REMARK 500 4 GLU B 72 -60.82 -174.53 REMARK 500 5 VAL A 62 82.53 35.67 REMARK 500 5 ALA A 65 99.85 72.07 REMARK 500 5 HIS A 66 28.14 -154.96 REMARK 500 5 SER A 69 -58.22 -179.62 REMARK 500 5 GLU A 72 25.10 -164.11 REMARK 500 5 GLN B 63 149.76 62.58 REMARK 500 5 LEU B 64 -176.89 55.31 REMARK 500 5 ALA B 65 77.60 -157.60 REMARK 500 5 HIS B 66 -171.15 -64.57 REMARK 500 5 HIS B 67 -63.10 -179.49 REMARK 500 5 SER B 69 -164.83 47.76 REMARK 500 5 GLU B 70 -62.29 -171.95 REMARK 500 REMARK 500 THIS ENTRY HAS 205 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7208 RELATED DB: BMRB REMARK 900 NMR ASSIGNMENT REMARK 900 RELATED ID: 2KPE RELATED DB: PDB DBREF 2KPF A 61 98 UNP P02724 GLPA_HUMAN 80 117 DBREF 2KPF B 61 98 UNP P02724 GLPA_HUMAN 80 117 SEQRES 1 A 38 ARG VAL GLN LEU ALA HIS HIS PHE SER GLU PRO GLU ILE SEQRES 2 A 38 THR LEU ILE ILE PHE GLY VAL MET ALA GLY VAL ILE GLY SEQRES 3 A 38 THR ILE LEU LEU ILE SER TYR GLY ILE ARG ARG LEU SEQRES 1 B 38 ARG VAL GLN LEU ALA HIS HIS PHE SER GLU PRO GLU ILE SEQRES 2 B 38 THR LEU ILE ILE PHE GLY VAL MET ALA GLY VAL ILE GLY SEQRES 3 B 38 THR ILE LEU LEU ILE SER TYR GLY ILE ARG ARG LEU HELIX 1 1 GLU A 72 ARG A 97 1 26 HELIX 2 2 GLU B 72 ARG B 97 1 26 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000