PDB Short entry for 2KQZ
HEADER    PROTEIN BINDING                         25-NOV-09   2KQZ              
TITLE     SOLUTION STRUCTURE OF THE RPN13 DEUBAD DOMAIN                         
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: PROTEASOMAL UBIQUITIN RECEPTOR ADRM1;                      
COMPND   3 CHAIN: A;                                                            
COMPND   4 SYNONYM: ADHESION-REGULATING MOLECULE 1, ARM-1, 110 KDA CELL MEMBRANE
COMPND   5 GLYCOPROTEIN, GP110, RPN13 HOMOLOG, PROTEASOME REGULATORY PARTICLE   
COMPND   6 NON-ATPASE 13, HRPN13;                                               
COMPND   7 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: ADRM1, GP110;                                                  
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);                       
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 469008;                                     
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);                                 
SOURCE   9 EXPRESSION_SYSTEM_VECTOR_TYPE: PGEX4T1;                              
SOURCE  10 EXPRESSION_SYSTEM_VECTOR: PLASMID                                    
KEYWDS    PROTEASOME, UCH37-BINDING DOMAIN, PROTEIN BINDING                     
EXPDTA    SOLUTION NMR                                                          
NUMMDL    35                                                                    
AUTHOR    X.CHEN,B.LEE,D.FINLEY,K.J.WALTERS                                     
REVDAT   2   23-DEC-15 2KQZ    1       TITLE  VERSN                             
REVDAT   1   26-MAY-10 2KQZ    0                                                
JRNL        AUTH   X.CHEN,B.H.LEE,D.FINLEY,K.J.WALTERS                          
JRNL        TITL   STRUCTURE OF PROTEASOME UBIQUITIN RECEPTOR HRPN13 AND ITS    
JRNL        TITL 2 ACTIVATION BY THE SCAFFOLDING PROTEIN HRPN2.                 
JRNL        REF    MOL.CELL                      V.  38   404 2010              
JRNL        REFN                   ISSN 1097-2765                               
JRNL        PMID   20471946                                                     
JRNL        DOI    10.1016/J.MOLCEL.2010.04.019                                 
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : X-PLOR_NIH 2.24                                      
REMARK   3   AUTHORS     : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE             
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF    
REMARK   3  2721 RESTRAINTS, 2503 ARE NOE-DERIVED DISTANCE CONSTRAINTS, 76      
REMARK   3  DISTANCE RESTRAINTS FROM HYDROGEN BONDS, 142 DIHEDRAL ANGLE         
REMARK   3  RESTRAINTS.                                                         
REMARK   4                                                                      
REMARK   4 2KQZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-DEC-09.                  
REMARK 100 THE RCSB ID CODE IS RCSB101464.                                      
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298                                
REMARK 210  PH                             : 6.5                                
REMARK 210  IONIC STRENGTH                 : 20 MM PHOSPHATE, 50 MM NACL        
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 0.7 MM [U-100% 13C; U-100% 15N;    
REMARK 210                                   U-70% 2H] XCCD, 0.7 MM [U-15N; U-  
REMARK 210                                   50% 2H] XCCD, 0.7 MM [U-15N; 100%  
REMARK 210                                   2H] XCCD, 0.5 MM [U-15N] XCCD,     
REMARK 210                                   1.0 MM XCCD, 90% H2O/10% D2O; 0.7  
REMARK 210                                   MM [U-13C] XCCD, 100% D2O; 1.0 MM  
REMARK 210                                   XCCD, 100% D2O                     
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2D 1H-15N HSQC; 3D HNCA; 3D        
REMARK 210                                   HN(CO)CA; 3D HNCO; 3D HCCH-TOCSY;  
REMARK 210                                   3D HNCACB; 2D 1H-1H NOESY; 2D 1H-  
REMARK 210                                   13C HSQC; 3D 1H-13C NOESY; 3D 1H-  
REMARK 210                                   15N NOESY                          
REMARK 210  SPECTROMETER FIELD STRENGTH    : 600 MHZ; 800 MHZ; 900 MHZ          
REMARK 210  SPECTROMETER MODEL             : INOVA                              
REMARK 210  SPECTROMETER MANUFACTURER      : VARIAN                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : VNMRJ, NMRPIPE 2.5, XEASY 6.4,     
REMARK 210                                   CARA 1.8.4, X-PLOR_NIH 2.24        
REMARK 210   METHOD USED                   : SIMULATED ANNEALING                
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 35                                 
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 35                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : ALL CALCULATED STRUCTURES          
REMARK 210                                   SUBMITTED                          
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 THR A 254      -70.73   -149.79                                   
REMARK 500  1 ALA A 255      -31.26   -172.20                                   
REMARK 500  1 ALA A 256      -50.48   -155.68                                   
REMARK 500  1 ILE A 262     -165.86   -129.35                                   
REMARK 500  1 GLN A 263      -75.86     56.93                                   
REMARK 500  1 MET A 274       57.50    -98.99                                   
REMARK 500  1 VAL A 276       73.59     40.53                                   
REMARK 500  1 ALA A 278      150.03     61.83                                   
REMARK 500  1 PRO A 280       83.28    -45.42                                   
REMARK 500  1 THR A 293      152.74    -43.82                                   
REMARK 500  1 PRO A 315       19.97    -68.79                                   
REMARK 500  1 SER A 316      108.66     71.39                                   
REMARK 500  1 PRO A 321     -138.11    -47.39                                   
REMARK 500  1 GLN A 322      -69.97   -141.99                                   
REMARK 500  1 THR A 330      -77.16   -142.72                                   
REMARK 500  1 SER A 333      -36.02    161.22                                   
REMARK 500  1 LEU A 361      152.97    -47.58                                   
REMARK 500  1 PRO A 362      144.33    -39.50                                   
REMARK 500  1 GLU A 388       30.66   -178.11                                   
REMARK 500  1 THR A 394       85.10   -165.54                                   
REMARK 500  1 LYS A 395       65.94   -100.13                                   
REMARK 500  1 ASP A 399      -47.42   -166.28                                   
REMARK 500  1 GLU A 400       75.03     43.75                                   
REMARK 500  2 THR A 254      -43.79   -145.23                                   
REMARK 500  2 SER A 257       66.39   -171.28                                   
REMARK 500  2 THR A 259       59.71   -159.13                                   
REMARK 500  2 SER A 265      -35.39   -168.52                                   
REMARK 500  2 LEU A 271       40.05    -73.82                                   
REMARK 500  2 ALA A 272      -41.33   -143.86                                   
REMARK 500  2 ASN A 275       97.61     63.51                                   
REMARK 500  2 VAL A 276       75.40     31.75                                   
REMARK 500  2 ALA A 281      -82.19     55.51                                   
REMARK 500  2 THR A 293      156.03    -45.37                                   
REMARK 500  2 PRO A 315       22.34    -71.48                                   
REMARK 500  2 SER A 316       97.61     60.99                                   
REMARK 500  2 SER A 319     -163.78   -161.90                                   
REMARK 500  2 PRO A 321     -137.18    -49.60                                   
REMARK 500  2 GLN A 322      -56.30   -148.10                                   
REMARK 500  2 THR A 330      -76.80   -146.93                                   
REMARK 500  2 SER A 333      -42.46    166.98                                   
REMARK 500  2 MET A 356      -15.91    -46.15                                   
REMARK 500  2 GLN A 389       26.80     38.71                                   
REMARK 500  2 LYS A 395       82.62     44.13                                   
REMARK 500  2 LYS A 397      -92.54    -85.14                                   
REMARK 500  2 LYS A 398       99.08    -60.67                                   
REMARK 500  2 ASP A 399      118.91   -161.21                                   
REMARK 500  2 GLU A 402      165.39     55.44                                   
REMARK 500  2 ASP A 403      -44.22   -136.39                                   
REMARK 500  2 SER A 405      -13.79   -152.93                                   
REMARK 500  3 THR A 254       -8.49    -59.10                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     990 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 650                                                                      
REMARK 650 HELIX                                                                
REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED                              
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 2R2Y   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF THE PROTEASOMAL RPN13 PRU-DOMAIN                
REMARK 900 RELATED ID: 2Z4D   RELATED DB: PDB                                   
REMARK 900 NMR STRUCTURES OF YEAST PROTEASOME COMPONENT RPN13                   
REMARK 900 RELATED ID: 2Z59   RELATED DB: PDB                                   
REMARK 900 COMPLEX STRUCTURES OF MOUSE RPN13 (22-130AA) AND UBIQUITIN           
REMARK 900 RELATED ID: 3IHR   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF UCH37                                           
DBREF  2KQZ A  253   407  UNP    Q16186   ADRM1_HUMAN    253    407             
SEQRES   1 A  155  SER THR ALA ALA SER PRO THR GLN PRO ILE GLN LEU SER          
SEQRES   2 A  155  ASP LEU GLN SER ILE LEU ALA THR MET ASN VAL PRO ALA          
SEQRES   3 A  155  GLY PRO ALA GLY GLY GLN GLN VAL ASP LEU ALA SER VAL          
SEQRES   4 A  155  LEU THR PRO GLU ILE MET ALA PRO ILE LEU ALA ASN ALA          
SEQRES   5 A  155  ASP VAL GLN GLU ARG LEU LEU PRO TYR LEU PRO SER GLY          
SEQRES   6 A  155  GLU SER LEU PRO GLN THR ALA ASP GLU ILE GLN ASN THR          
SEQRES   7 A  155  LEU THR SER PRO GLN PHE GLN GLN ALA LEU GLY MET PHE          
SEQRES   8 A  155  SER ALA ALA LEU ALA SER GLY GLN LEU GLY PRO LEU MET          
SEQRES   9 A  155  CYS GLN PHE GLY LEU PRO ALA GLU ALA VAL GLU ALA ALA          
SEQRES  10 A  155  ASN LYS GLY ASP VAL GLU ALA PHE ALA LYS ALA MET GLN          
SEQRES  11 A  155  ASN ASN ALA LYS PRO GLU GLN LYS GLU GLY ASP THR LYS          
SEQRES  12 A  155  ASP LYS LYS ASP GLU GLU GLU ASP MET SER LEU ASP              
HELIX    1   1 SER A  265  MET A  274  1                                  10    
HELIX    2   2 GLN A  284  LEU A  292  1                                   9    
HELIX    3   3 MET A  297  ASN A  303  1                                   7    
HELIX    4   4 ASN A  303  LEU A  314  1                                  12    
HELIX    5   5 THR A  323  ASN A  329  1                                   7    
HELIX    6   6 SER A  333  SER A  349  1                                  17    
HELIX    7   7 LEU A  352  PHE A  359  1                                   8    
HELIX    8   8 PRO A  362  GLY A  372  1                                  11    
HELIX    9   9 ASP A  373  ALA A  385  1                                  13    
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000