PDB Short entry for 2KSJ HEADER VIRAL PROTEIN 05-JAN-10 2KSJ TITLE STRUCTURE AND DYNAMICS OF THE MEMBRANE-BOUND FORM OF PF1 COAT PROTEIN: TITLE 2 IMPLICATIONS FOR STRUCTURAL REARRANGEMENT DURING VIRUS ASSEMBLY COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN G8P; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 37-82; COMPND 5 SYNONYM: GENE 8 PROTEIN, G8P, COAT PROTEIN B, MAJOR COAT PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PHAGE PF1; SOURCE 3 ORGANISM_COMMON: BACTERIOPHAGE PF1; SOURCE 4 ORGANISM_TAXID: 10871; SOURCE 5 GENE: VIII KEYWDS MEMBRANE PROTEIN, CAPSID PROTEIN, HOST MEMBRANE, MEMBRANE, KEYWDS 2 TRANSMEMBRANE, VIRION, VIRAL PROTEIN EXPDTA SOLUTION NMR; SOLID-STATE NMR NUMMDL 10 AUTHOR S.PARK,F.MARASSI,D.BLACK,S.J.OPELLA REVDAT 1 10-NOV-10 2KSJ 0 JRNL AUTH S.H.PARK,F.M.MARASSI,D.BLACK,S.J.OPELLA JRNL TITL STRUCTURE AND DYNAMICS OF THE MEMBRANE-BOUND FORM OF PF1 JRNL TITL 2 COAT PROTEIN: IMPLICATIONS OF STRUCTURAL REARRANGEMENT FOR JRNL TITL 3 VIRUS ASSEMBLY. JRNL REF BIOPHYS.J. V. 99 1465 2010 JRNL REFN ISSN 0006-3495 JRNL PMID 20816058 JRNL DOI 10.1016/J.BPJ.2010.06.009 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KSJ COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-FEB-10. REMARK 100 THE RCSB ID CODE IS RCSB101520. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313; 295; 313 REMARK 210 PH : 6.7; 6.7; 6.7 REMARK 210 IONIC STRENGTH : NULL; NULL; NULL REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 5 MM [U-98% 15N] PROTEIN, 100% REMARK 210 H2O; 5 MM [U-98% 15N] PROTEIN, REMARK 210 100% H2O; 1 MM [U-95% 15N] REMARK 210 PROTEIN, 1 MM [U-98% 13C; U-98% REMARK 210 15N] PROTEIN, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 1D 15N, 2D 1H-15N SLF; 2D 1H-15N REMARK 210 HSQC; 3D HNCA; 2D 1H-15N IPAP; 3D REMARK 210 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 500 MHZ; 600 MHZ; 700 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR_NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 217 REMARK 217 SOLID STATE NMR STUDY REMARK 217 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLID REMARK 217 STATE NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 217 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 217 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 14 50.28 -68.79 REMARK 500 2 ASP A 14 45.60 -69.89 REMARK 500 2 GLN A 16 91.59 -59.06 REMARK 500 2 LYS A 45 97.92 -2.32 REMARK 500 3 ILE A 3 63.04 -152.39 REMARK 500 3 ASP A 14 45.81 -71.32 REMARK 500 3 LYS A 45 -92.30 -34.46 REMARK 500 4 ILE A 3 79.88 -158.77 REMARK 500 4 ASP A 14 73.64 -53.13 REMARK 500 4 GLN A 16 76.42 -62.17 REMARK 500 4 ASP A 18 -160.00 -101.94 REMARK 500 4 MET A 19 88.74 -44.53 REMARK 500 4 LYS A 45 -89.50 38.55 REMARK 500 5 ASP A 14 55.01 -68.26 REMARK 500 6 ASP A 14 52.78 -67.98 REMARK 500 6 LYS A 45 96.84 23.41 REMARK 500 7 ILE A 3 57.68 -154.87 REMARK 500 7 ASP A 18 -140.19 -122.32 REMARK 500 7 LYS A 45 -80.81 39.83 REMARK 500 8 ASP A 14 55.75 -68.69 REMARK 500 8 ASP A 18 -157.37 -100.96 REMARK 500 8 LYS A 45 95.95 -42.73 REMARK 500 9 ASP A 14 38.84 -73.69 REMARK 500 9 MET A 19 30.37 -70.13 REMARK 500 9 LYS A 45 74.55 15.42 REMARK 500 REMARK 500 REMARK: NULL DBREF 2KSJ A 1 46 UNP P03621 CAPSD_BPPF1 37 82 SEQRES 1 A 46 GLY VAL ILE ASP THR SER ALA VAL GLU SER ALA ILE THR SEQRES 2 A 46 ASP GLY GLN GLY ASP MET LYS ALA ILE GLY GLY TYR ILE SEQRES 3 A 46 VAL GLY ALA LEU VAL ILE LEU ALA VAL ALA GLY LEU ILE SEQRES 4 A 46 TYR SER MET LEU ARG LYS ALA HELIX 1 1 ASP A 4 ASP A 14 1 11 HELIX 2 2 ALA A 21 ARG A 44 1 24 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000