PDB Short entry for 2KSP
HEADER    PROTEIN BINDING                         11-JAN-10   2KSP              
TITLE     MECHANISM FOR THE SELECTIVE INTERACTION OF C-TERMINAL EH-DOMAIN       
TITLE    2 PROTEINS WITH SPECIFIC NPF-CONTAINING PARTNERS                       
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: EH DOMAIN-CONTAINING PROTEIN 1;                            
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: C-TERMINAL DOMAIN (UNP RESIDUES 435-534);                  
COMPND   5 SYNONYM: TESTILIN, HPAST1;                                           
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MOL_ID: 2;                                                           
COMPND   8 MOLECULE: MICAL L1 LIKE PEPTIDE;                                     
COMPND   9 CHAIN: B;                                                            
COMPND  10 SYNONYM: MOLECULE INTERACTING WITH RAB13, MIRAB13;                   
COMPND  11 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: EHD1, PAST, PAST1, CDABP0131;                                  
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 EXPRESSION_SYSTEM_VECTOR: PGEX6P-2;                                  
SOURCE   9 MOL_ID: 2;                                                           
SOURCE  10 SYNTHETIC: YES                                                       
KEYWDS    EHD1, ENDOCYTIC RECYCLING, PROTEIN-PROTEIN INTERACTIONS, PROTEIN      
KEYWDS   2 BINDING                                                              
EXPDTA    SOLUTION NMR                                                          
NUMMDL    10                                                                    
AUTHOR    F.KIEKEN,M.SHARMA,M.JOVIC,S.S.GIRIDHARAN,N.NASLAVSKY,S.CAPLAN,        
AUTHOR   2 P.L.SORGEN                                                           
REVDAT   2   05-MAY-10 2KSP    1       JRNL                                     
REVDAT   1   26-JAN-10 2KSP    0                                                
JRNL        AUTH   F.KIEKEN,M.SHARMA,M.JOVIC,S.S.GIRIDHARAN,N.NASLAVSKY,        
JRNL        AUTH 2 S.CAPLAN,P.L.SORGEN                                          
JRNL        TITL   MECHANISM FOR THE SELECTIVE INTERACTION OF C-TERMINAL EPS15  
JRNL        TITL 2 HOMOLOGY DOMAIN PROTEINS WITH SPECIFIC                       
JRNL        TITL 3 ASN-PRO-PHE-CONTAINING PARTNERS.                             
JRNL        REF    J.BIOL.CHEM.                  V. 285  8687 2010              
JRNL        REFN                   ISSN 0021-9258                               
JRNL        PMID   20106972                                                     
JRNL        DOI    10.1074/JBC.M109.045666                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : ARIA 1.2                                             
REMARK   3   AUTHORS     : NULL                                                 
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2KSP COMPLIES WITH FORMAT V. 3.20, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-10.                  
REMARK 100 THE RCSB ID CODE IS RCSB101526.                                      
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298                                
REMARK 210  PH                             : 7.0                                
REMARK 210  IONIC STRENGTH                 : 0.1                                
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 0.6 MM [U-99% 13C; U-99% 15N] EH   
REMARK 210                                   DOMAIN OF EHD1, 2 MM MICAL L1      
REMARK 210                                   LIKE PEPTIDE, 90% H2O/10% D2O      
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2D 1H-15N HSQC; 2D 1H-13C HSQC;    
REMARK 210                                   3D HNCACB; 3D 1H-15N NOESY; 3D 1H  
REMARK 210                                   -13C NOESY; 2D 13CFILTERED-        
REMARK 210                                   13CFILTEREDNOESY; 2D 13C-FILTERED  
REMARK 210                                   -15N EDITEDNOESY; 2D 15N FILTERED  
REMARK 210                                   NOESY                              
REMARK 210  SPECTROMETER FIELD STRENGTH    : 600 MHZ                            
REMARK 210  SPECTROMETER MODEL             : INOVA                              
REMARK 210  SPECTROMETER MANUFACTURER      : VARIAN                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NMRVIEW, NMRPIPE, PROCHECKNMR,     
REMARK 210                                   VNMR                               
REMARK 210   METHOD USED                   : SIMULATED ANNEALING                
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 30                                 
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 10                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LOWEST ENERGY  
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   HB3  ASP A    49     HE2  TYR A    53              1.45            
REMARK 500   OE2  GLU A   104     HZ2  LYS A   135              1.56            
REMARK 500   HZ1  LYS A    91     OE1  GLU B   152              1.57            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS                                      
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)               
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   RES CSSEQI ATM2   DEVIATION                     
REMARK 500  8 TYR A  53   CE1   TYR A  53   CZ      0.091                       
REMARK 500  8 TYR A  53   CZ    TYR A  53   CE2    -0.092                       
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 SER A  61       84.86     68.76                                   
REMARK 500  1 GLU B 154      148.93     72.22                                   
REMARK 500  1 GLU B 155      -73.07   -105.47                                   
REMARK 500  2 VAL A  45        5.72    -69.87                                   
REMARK 500  2 SER A  61       93.09     70.07                                   
REMARK 500  2 PRO A 123       24.30    -73.07                                   
REMARK 500  2 SER B 145       98.58    -66.70                                   
REMARK 500  2 PRO B 147       23.58    -73.29                                   
REMARK 500  2 GLU B 153      -72.86    -75.22                                   
REMARK 500  2 GLU B 154     -100.41     45.82                                   
REMARK 500  3 SER A  61       89.32     69.29                                   
REMARK 500  3 ASN A  64       23.71     49.48                                   
REMARK 500  3 LYS B 146       79.54     58.58                                   
REMARK 500  3 GLU B 154     -154.30     57.37                                   
REMARK 500  3 GLU B 156       58.79   -141.16                                   
REMARK 500  4 SER A  61       86.15     64.71                                   
REMARK 500  4 LYS A  97       72.48     60.66                                   
REMARK 500  4 PRO A 133       11.28    -67.85                                   
REMARK 500  4 PRO B 147     -167.21    -78.11                                   
REMARK 500  4 GLU B 154      174.46     73.17                                   
REMARK 500  4 GLU B 155      151.18     72.20                                   
REMARK 500  4 GLU B 156      107.14     69.30                                   
REMARK 500  5 SER A  61       94.05     67.91                                   
REMARK 500  5 LYS A  97       73.46     61.01                                   
REMARK 500  5 LEU A 130      -35.37   -131.71                                   
REMARK 500  5 GLU B 144      -75.88    -90.44                                   
REMARK 500  5 SER B 145      -97.66   -118.60                                   
REMARK 500  5 LYS B 146       72.40     52.16                                   
REMARK 500  5 GLU B 154      151.43     68.85                                   
REMARK 500  5 GLU B 155      -68.21    -99.34                                   
REMARK 500  6 SER A  61       92.03     68.00                                   
REMARK 500  6 LYS A  97       74.48     66.15                                   
REMARK 500  6 GLU B 154      -79.69     65.05                                   
REMARK 500  7 SER A  61       90.10     66.51                                   
REMARK 500  7 LYS A  97       72.07     54.74                                   
REMARK 500  7 PRO B 147      -79.44    -84.34                                   
REMARK 500  7 TYR B 148      -36.83   -139.13                                   
REMARK 500  7 GLU B 154      149.66     68.92                                   
REMARK 500  7 GLU B 155     -165.04   -113.73                                   
REMARK 500  8 SER A  61       88.69     65.06                                   
REMARK 500  8 LYS A  97       76.40     73.45                                   
REMARK 500  8 SER B 145     -166.04     54.19                                   
REMARK 500  8 LYS B 146       92.79     63.27                                   
REMARK 500  8 GLU B 154     -175.56     67.25                                   
REMARK 500  9 SER A  61       84.70     59.18                                   
REMARK 500  9 LYS A  97       73.64     56.17                                   
REMARK 500  9 PRO B 147     -179.74    -69.56                                   
REMARK 500  9 GLU B 154      111.40     75.30                                   
REMARK 500  9 GLU B 155      -72.56   -147.45                                   
REMARK 500  9 GLU B 156      -74.69   -112.84                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS      54 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                           1  CA A 141  CA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 LEU A 100   O                                                      
REMARK 620 2 GLU A 105   OE2 142.2                                              
REMARK 620 N                    1                                               
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 141                  
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 16671   RELATED DB: BMRB                                 
DBREF  2KSP A   40   139  UNP    Q9H4M9   EHD1_HUMAN     435    534             
DBREF  2KSP B  143   157  UNP    Q8N3F8   MILK1_HUMAN    419    433             
SEQADV 2KSP GLY A   35  UNP  Q9H4M9              EXPRESSION TAG                 
SEQADV 2KSP PRO A   36  UNP  Q9H4M9              EXPRESSION TAG                 
SEQADV 2KSP LEU A   37  UNP  Q9H4M9              EXPRESSION TAG                 
SEQADV 2KSP GLY A   38  UNP  Q9H4M9              EXPRESSION TAG                 
SEQADV 2KSP SER A   39  UNP  Q9H4M9              EXPRESSION TAG                 
SEQRES   1 A  105  GLY PRO LEU GLY SER ASP ASP VAL GLU TRP VAL VAL GLY          
SEQRES   2 A  105  LYS ASP LYS PRO THR TYR ASP GLU ILE PHE TYR THR LEU          
SEQRES   3 A  105  SER PRO VAL ASN GLY LYS ILE THR GLY ALA ASN ALA LYS          
SEQRES   4 A  105  LYS GLU MET VAL LYS SER LYS LEU PRO ASN THR VAL LEU          
SEQRES   5 A  105  GLY LYS ILE TRP LYS LEU ALA ASP VAL ASP LYS ASP GLY          
SEQRES   6 A  105  LEU LEU ASP ASP GLU GLU PHE ALA LEU ALA ASN HIS LEU          
SEQRES   7 A  105  ILE LYS VAL LYS LEU GLU GLY HIS GLU LEU PRO ALA ASP          
SEQRES   8 A  105  LEU PRO PRO HIS LEU VAL PRO PRO SER LYS ARG ARG HIS          
SEQRES   9 A  105  GLU                                                          
SEQRES   1 B   15  LEU GLU SER LYS PRO TYR ASN PRO PHE GLU GLU GLU GLU          
SEQRES   2 B   15  GLU ASP                                                      
HET     CA  A 141       1                                                       
HETNAM      CA CALCIUM ION                                                      
FORMUL   3   CA    CA 2+                                                        
HELIX    1   1 VAL A   45  LEU A   60  1                                  16    
HELIX    2   2 PRO A   62  LYS A   66  5                                   5    
HELIX    3   3 THR A   68  SER A   79  1                                  12    
HELIX    4   4 PRO A   82  ASP A   94  1                                  13    
HELIX    5   5 ASP A  102  GLU A  118  1                                  17    
HELIX    6   6 PRO A  132  ARG A  136  5                                   5    
LINK         O   LEU A 100                CA    CA A 141     1555   1555  2.02  
LINK         OE2 GLU A 105                CA    CA A 141     1555   1555  2.08  
SITE     1 AC1  5 ASP A  94  ASP A  96  ASP A  98  LEU A 100                    
SITE     2 AC1  5 GLU A 105                                                     
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000