PDB Short entry for 2KUL
HEADER    TRANSFERASE                             19-FEB-10   2KUL              
TITLE     SOLUTION STRUCTURE OF HUMAN VACCINIA RELATED KINASE 1(VRK1)           
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE VRK1;                      
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: RESIDUES 1-360;                                            
COMPND   5 SYNONYM: VACCINIA-RELATED KINASE 1;                                  
COMPND   6 EC: 2.7.11.1;                                                        
COMPND   7 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: VRK1;                                                          
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR;                               
SOURCE   9 EXPRESSION_SYSTEM_VECTOR: PET29B                                     
KEYWDS    VRK1, VACCINIA RELATED KINASE, ATP-BINDING, KINASE, NUCLEOTIDE-       
KEYWDS   2 BINDING, SERINE/THREONINE-PROTEIN KINASE, TRANSFERASE                
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    J.SHIN,H.YOON                                                         
REVDAT   2   26-FEB-20 2KUL    1       REMARK SEQADV                            
REVDAT   1   23-FEB-11 2KUL    0                                                
JRNL        AUTH   J.SHIN,H.YOON                                                
JRNL        TITL   SOLUTION STRUCTURE OF HUMAN VACCINIA RELATED KINASE 1(VRK1)  
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : NMRPIPE, CNS 1.1                                     
REMARK   3   AUTHORS     : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX    
REMARK   3  (NMRPIPE), BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,        
REMARK   3  JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS)       
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: REFINEMENT IN EXPLICIT WATER USING CNS    
REMARK   3  1.1                                                                 
REMARK   4                                                                      
REMARK   4 2KUL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-FEB-10.                  
REMARK 100 THE DEPOSITION ID IS D_1000101591.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298                                
REMARK 210  PH                             : 6.8                                
REMARK 210  IONIC STRENGTH                 : 20                                 
REMARK 210  PRESSURE                       : NULL                               
REMARK 210  SAMPLE CONTENTS                : 0.3-0.5MM [U-100% 13C; U-100%      
REMARK 210                                   15N; U-80% 2H] VACCINIA RELATED-   
REMARK 210                                   KINASE 1; 0.3-0.5MM [U-100% 15N;   
REMARK 210                                   U-50% 2H] VACCINIA RELATED-        
REMARK 210                                   KINASE 1; 0.1-0.2MM [U-100% 15N]   
REMARK 210                                   VACCINIA RELATED-KINASE 1; 90%     
REMARK 210                                   H2O/10% D2O; 0.3-0.5MM [U-100%     
REMARK 210                                   13C; U-100% 15N; U-70% 2H]         
REMARK 210                                   VACCINIA RELATED-KINASE 1; 0.3-    
REMARK 210                                   0.5MM [13C;15N]-VAL,ILE,LEU; [U-   
REMARK 210                                   100% 2H] VACCINIA RELATED-KINASE   
REMARK 210                                   1; 100% D2O                        
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2D 1H-15N HSQC; 3D HNCACB; 3D      
REMARK 210                                   HN(COCA)CB; 3D HNCO; 3D HN(CO)CA;  
REMARK 210                                   3D HN(CA)CO; 3D 1H-15N NOESY;      
REMARK 210                                   3D 1H-13C NOESY; 3D HCCH-TOCSY     
REMARK 210  SPECTROMETER FIELD STRENGTH    : 700 MHZ; 800 MHZ; 900 MHZ          
REMARK 210  SPECTROMETER MODEL             : AVANCE                             
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : SPARKY, CYANA 2.1                  
REMARK 210   METHOD USED                   : TORSION ANGLE DYNAMICS,            
REMARK 210                                   SIMULATED ANNEALING, TORSION       
REMARK 210                                   ANGLE DYNAMICS                     
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 200                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LOWEST         
REMARK 210                                   ENERGY                             
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;                   
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                            
REMARK 465   MODELS 1-20                                                        
REMARK 465     RES C SSSEQI                                                     
REMARK 465     LEU A   361                                                      
REMARK 465     GLU A   362                                                      
REMARK 465     HIS A   363                                                      
REMARK 465     HIS A   364                                                      
REMARK 465     HIS A   365                                                      
REMARK 465     HIS A   366                                                      
REMARK 465     HIS A   367                                                      
REMARK 465     HIS A   368                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   HE1  TYR A    87     HG2  PRO A   111              1.21            
REMARK 500   HG2  GLU A    73     HB2  LEU A    80              1.31            
REMARK 500   HG3  ARG A   241     HA   TYR A   311              1.35            
REMARK 500   O    LEU A   285     HG   CYS A   289              1.56            
REMARK 500  HH12  ARG A   103     OE2  GLU A   170              1.58            
REMARK 500   HZ2  LYS A    35     OD2  ASP A    65              1.59            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 ALA A   6      108.62    179.67                                   
REMARK 500  1 GLN A   8      109.69   -178.71                                   
REMARK 500  1 ARG A  11       79.46   -157.64                                   
REMARK 500  1 ALA A  15       80.09   -157.98                                   
REMARK 500  1 GLU A  21      -63.00     69.16                                   
REMARK 500  1 GLN A  22      -71.98    -66.21                                   
REMARK 500  1 ALA A  24      -63.73    179.38                                   
REMARK 500  1 PHE A  48      -59.02    177.93                                   
REMARK 500  1 MET A  56      173.99     63.21                                   
REMARK 500  1 GLU A  60      -55.56   -144.82                                   
REMARK 500  1 ASN A  77      105.49     68.63                                   
REMARK 500  1 SER A 116      147.82   -171.27                                   
REMARK 500  1 HIS A 171      -65.07    -97.49                                   
REMARK 500  1 GLU A 172      -44.31   -162.05                                   
REMARK 500  1 ASN A 189       80.78   -159.57                                   
REMARK 500  1 ASP A 197       65.49     68.74                                   
REMARK 500  1 LEU A 200       36.38    -88.78                                   
REMARK 500  1 GLU A 207      -63.96     70.31                                   
REMARK 500  1 LYS A 211      -88.44    -81.04                                   
REMARK 500  1 GLU A 212      139.45    173.05                                   
REMARK 500  1 LYS A 214       33.15   -155.24                                   
REMARK 500  1 LYS A 218      -56.21   -156.03                                   
REMARK 500  1 CYS A 220      -60.08   -134.32                                   
REMARK 500  1 HIS A 221       96.85     52.98                                   
REMARK 500  1 SER A 229     -174.04     62.49                                   
REMARK 500  1 ASP A 231      -72.65    -49.69                                   
REMARK 500  1 SER A 239     -159.95    -85.47                                   
REMARK 500  1 LYS A 266       14.07   -157.22                                   
REMARK 500  1 GLU A 292      -82.66   -159.59                                   
REMARK 500  1 LYS A 293       29.67   -144.13                                   
REMARK 500  1 PRO A 296       37.90    -98.85                                   
REMARK 500  1 ASP A 310      -96.96     68.48                                   
REMARK 500  1 TYR A 311      -38.10   -136.89                                   
REMARK 500  1 THR A 312       29.17   -158.38                                   
REMARK 500  1 GLU A 313      -71.46    -68.21                                   
REMARK 500  1 LYS A 338       78.10     58.30                                   
REMARK 500  1 LEU A 339     -169.66     65.36                                   
REMARK 500  1 LEU A 349     -162.73   -114.10                                   
REMARK 500  1 LYS A 357      -50.55   -168.00                                   
REMARK 500  2 SER A  14       29.99   -154.74                                   
REMARK 500  2 ALA A  20      -82.75   -171.04                                   
REMARK 500  2 PHE A  23       84.15   -169.37                                   
REMARK 500  2 ALA A  24     -162.49   -176.22                                   
REMARK 500  2 LYS A  34       36.12     71.07                                   
REMARK 500  2 PHE A  48      -79.08    171.71                                   
REMARK 500  2 CYS A  50       76.48     65.52                                   
REMARK 500  2 ALA A  54       36.93    -93.39                                   
REMARK 500  2 SER A  61       86.85    -66.77                                   
REMARK 500  2 ALA A  66       91.80     60.76                                   
REMARK 500  2 PRO A  74     -171.45    -63.38                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     878 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 2KTY   RELATED DB: PDB                                   
REMARK 900 THE SAME PROTEIN REFINED BY CYANA                                    
REMARK 900 RELATED ID: 16738   RELATED DB: BMRB                                 
DBREF  2KUL A    1   360  UNP    Q99986   VRK1_HUMAN       1    360             
SEQADV 2KUL LEU A  361  UNP  Q99986              EXPRESSION TAG                 
SEQADV 2KUL GLU A  362  UNP  Q99986              EXPRESSION TAG                 
SEQADV 2KUL HIS A  363  UNP  Q99986              EXPRESSION TAG                 
SEQADV 2KUL HIS A  364  UNP  Q99986              EXPRESSION TAG                 
SEQADV 2KUL HIS A  365  UNP  Q99986              EXPRESSION TAG                 
SEQADV 2KUL HIS A  366  UNP  Q99986              EXPRESSION TAG                 
SEQADV 2KUL HIS A  367  UNP  Q99986              EXPRESSION TAG                 
SEQADV 2KUL HIS A  368  UNP  Q99986              EXPRESSION TAG                 
SEQRES   1 A  368  MET PRO ARG VAL LYS ALA ALA GLN ALA GLY ARG GLN SER          
SEQRES   2 A  368  SER ALA LYS ARG HIS LEU ALA GLU GLN PHE ALA VAL GLY          
SEQRES   3 A  368  GLU ILE ILE THR ASP MET ALA LYS LYS GLU TRP LYS VAL          
SEQRES   4 A  368  GLY LEU PRO ILE GLY GLN GLY GLY PHE GLY CYS ILE TYR          
SEQRES   5 A  368  LEU ALA ASP MET ASN SER SER GLU SER VAL GLY SER ASP          
SEQRES   6 A  368  ALA PRO CYS VAL VAL LYS VAL GLU PRO SER ASP ASN GLY          
SEQRES   7 A  368  PRO LEU PHE THR GLU LEU LYS PHE TYR GLN ARG ALA ALA          
SEQRES   8 A  368  LYS PRO GLU GLN ILE GLN LYS TRP ILE ARG THR ARG LYS          
SEQRES   9 A  368  LEU LYS TYR LEU GLY VAL PRO LYS TYR TRP GLY SER GLY          
SEQRES  10 A  368  LEU HIS ASP LYS ASN GLY LYS SER TYR ARG PHE MET ILE          
SEQRES  11 A  368  MET ASP ARG PHE GLY SER ASP LEU GLN LYS ILE TYR GLU          
SEQRES  12 A  368  ALA ASN ALA LYS ARG PHE SER ARG LYS THR VAL LEU GLN          
SEQRES  13 A  368  LEU SER LEU ARG ILE LEU ASP ILE LEU GLU TYR ILE HIS          
SEQRES  14 A  368  GLU HIS GLU TYR VAL HIS GLY ASP ILE LYS ALA SER ASN          
SEQRES  15 A  368  LEU LEU LEU ASN TYR LYS ASN PRO ASP GLN VAL TYR LEU          
SEQRES  16 A  368  VAL ASP TYR GLY LEU ALA TYR ARG TYR CYS PRO GLU GLY          
SEQRES  17 A  368  VAL HIS LYS GLU TYR LYS GLU ASP PRO LYS ARG CYS HIS          
SEQRES  18 A  368  ASP GLY THR ILE GLU PHE THR SER ILE ASP ALA HIS ASN          
SEQRES  19 A  368  GLY VAL ALA PRO SER ARG ARG GLY ASP LEU GLU ILE LEU          
SEQRES  20 A  368  GLY TYR CYS MET ILE GLN TRP LEU THR GLY HIS LEU PRO          
SEQRES  21 A  368  TRP GLU ASP ASN LEU LYS ASP PRO LYS TYR VAL ARG ASP          
SEQRES  22 A  368  SER LYS ILE ARG TYR ARG GLU ASN ILE ALA SER LEU MET          
SEQRES  23 A  368  ASP LYS CYS PHE PRO GLU LYS ASN LYS PRO GLY GLU ILE          
SEQRES  24 A  368  ALA LYS TYR MET GLU THR VAL LYS LEU LEU ASP TYR THR          
SEQRES  25 A  368  GLU LYS PRO LEU TYR GLU ASN LEU ARG ASP ILE LEU LEU          
SEQRES  26 A  368  GLN GLY LEU LYS ALA ILE GLY SER LYS ASP ASP GLY LYS          
SEQRES  27 A  368  LEU ASP LEU SER VAL VAL GLU ASN GLY GLY LEU LYS ALA          
SEQRES  28 A  368  LYS THR ILE THR LYS LYS ARG LYS LYS LEU GLU HIS HIS          
SEQRES  29 A  368  HIS HIS HIS HIS                                              
HELIX    1   1 PRO A   79  ALA A   91  1                                  13    
HELIX    2   2 LYS A   92  ARG A  103  1                                  12    
HELIX    3   3 LEU A  138  ASN A  145  1                                   8    
HELIX    4   4 SER A  150  GLU A  170  1                                  21    
HELIX    5   5 LYS A  179  SER A  181  5                                   3    
HELIX    6   6 ASP A  197  ALA A  201  5                                   5    
HELIX    7   7 THR A  228  GLY A  235  1                                   8    
HELIX    8   8 SER A  239  GLY A  257  1                                  19    
HELIX    9   9 ASP A  267  ASN A  281  1                                  15    
HELIX   10  10 ASN A  281  LYS A  288  1                                   8    
HELIX   11  11 PRO A  296  LEU A  309  1                                  14    
HELIX   12  12 LEU A  316  ILE A  331  1                                  16    
SHEET    1   A 6 ILE A  28  THR A  30  0                                        
SHEET    2   A 6 GLU A  36  PRO A  42 -1  O  TRP A  37   N  ILE A  29           
SHEET    3   A 6 TYR A  52  ALA A  54 -1  O  LEU A  53   N  GLY A  40           
SHEET    4   A 6 CYS A  68  PRO A  74 -1  O  VAL A  70   N  TYR A  52           
SHEET    5   A 6 LYS A 124  ASP A 132 -1  O  ARG A 127   N  GLU A  73           
SHEET    6   A 6 SER A 116  LYS A 121 -1  N  HIS A 119   O  TYR A 126           
SHEET    1   B 3 PHE A 134  ASP A 137  0                                        
SHEET    2   B 3 LEU A 183  ASN A 186 -1  O  LEU A 185   N  SER A 136           
SHEET    3   B 3 ASN A 189  LEU A 195 -1  O  TYR A 194   N  LEU A 184           
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000