PDB Short entry for 2KUQ HEADER SIGNALING PROTEIN 24-FEB-10 2KUQ TITLE SOLUTION STRUCTURE OF THE CHIMERA OF THE PTB DOMAIN OF SNT-2 AND 19- TITLE 2 RESIDUE PEPTIDE (AA 1571-1589) OF HALK COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBROBLAST GROWTH FACTOR RECEPTOR SUBSTRATE 3,LINKER,ALK COMPND 3 TYROSINE KINASE RECEPTOR; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: PTB DOMAIN; COMPND 6 SYNONYM: FGFR SUBSTRATE 3,FGFR-SIGNALING ADAPTOR SNT2,SUC1-ASSOCIATED COMPND 7 NEUROTROPHIC FACTOR TARGET 2,SNT-2,ANAPLASTIC LYMPHOMA KINASE; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606, 32630; SOURCE 5 GENE: FRS3, ALK; SOURCE 6 EXPRESSION_SYSTEM: E. COLI-CELL-FREE PROTEIN SYNTHESIS KEYWDS CHIMERA, SNT-2, PTB DOMAIN, HALK, STRUCTURAL GENOMICS, SIGNALING KEYWDS 2 PROTEIN, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.LI,S.KOSHIBA,T.TOMIZAWA,S.WATANABE,T.HARADA,T.KIGAWA,S.YOKOYAMA, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 15-JAN-20 2KUQ 1 COMPND SOURCE REMARK DBREF REVDAT 3 2 1 SEQADV REVDAT 2 12-FEB-14 2KUQ 1 JRNL VERSN REVDAT 1 26-MAY-10 2KUQ 0 JRNL AUTH S.KOSHIBA,H.LI,Y.MOTODA,T.TOMIZAWA,T.KASAI,N.TOCHIO, JRNL AUTH 2 T.YABUKI,T.HARADA,S.WATANABE,A.TANAKA,M.SHIROUZU,T.KIGAWA, JRNL AUTH 3 T.YAMAMOTO,S.YOKOYAMA JRNL TITL STRUCTURAL BASIS FOR THE RECOGNITION OF JRNL TITL 2 NUCLEOPHOSMIN-ANAPLASTIC LYMPHOMA KINASE ONCOPROTEIN BY THE JRNL TITL 3 PHOSPHOTYROSINE BINDING DOMAIN OF SUC1-ASSOCIATED JRNL TITL 4 NEUROTROPHIC FACTOR-INDUCED TYROSINE-PHOSPHORYLATED TARGET-2 JRNL REF J.STRUCT.FUNCT.GENOM. V. 11 125 2010 JRNL REFN ISSN 1345-711X JRNL PMID 20454865 JRNL DOI 10.1007/S10969-010-9091-X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, AMBER 9 REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), CASE, DARDEN, CHEATHAM, REMARK 3 III, SIMMERLING, WANG, DUKE, LUO, ... AND KOLLM REMARK 3 (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KUQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000101596. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.12MM [U-13C; U-15N] (CHAIN A) REMARK 210 -1, 20MM [U-2H] TRIS-2, 100MM REMARK 210 SODIUM CHLORIDE-3, 1MM [U-2H] REMARK 210 DTT-4, 0.02% SODIUM AZIDE-5, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, KUJIRA 0.9820, REMARK 210 NMRVIEW, CYANA 2.0.17, AMBER 9 REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 93 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 1 ARG A 137 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 2 ARG A 93 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 6 ARG A 137 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 7 ARG A 52 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 10 41.80 -157.41 REMARK 500 1 LEU A 49 -146.76 -120.94 REMARK 500 1 HIS A 50 -135.56 -86.81 REMARK 500 1 ASN A 70 15.23 -142.95 REMARK 500 1 ARG A 78 21.63 -72.84 REMARK 500 2 SER A 69 105.26 -59.90 REMARK 500 2 ARG A 78 33.16 -78.98 REMARK 500 2 CYS A 91 131.38 -174.77 REMARK 500 2 ASN A 108 20.48 -155.94 REMARK 500 2 SER A 130 -2.47 72.24 REMARK 500 3 VAL A 13 113.65 -177.94 REMARK 500 3 ASN A 16 14.29 -142.98 REMARK 500 3 ASN A 70 15.99 -147.19 REMARK 500 3 SER A 126 -41.75 -166.13 REMARK 500 3 SER A 130 -28.31 -168.26 REMARK 500 4 SER A 6 117.60 -161.71 REMARK 500 4 THR A 19 -15.57 -141.48 REMARK 500 4 GLN A 42 2.11 -68.33 REMARK 500 4 ASN A 70 30.64 -153.13 REMARK 500 4 SER A 127 113.58 -161.54 REMARK 500 5 ASP A 11 -178.21 -173.82 REMARK 500 5 VAL A 13 117.40 -177.57 REMARK 500 5 THR A 19 -29.36 -150.57 REMARK 500 5 ASN A 70 24.98 -141.58 REMARK 500 5 ARG A 79 63.27 -116.45 REMARK 500 5 CYS A 91 130.87 -170.32 REMARK 500 6 ASN A 70 15.42 -152.14 REMARK 500 6 ARG A 79 76.06 -102.66 REMARK 500 6 CYS A 91 131.03 -171.26 REMARK 500 7 THR A 19 -27.12 -151.38 REMARK 500 7 SER A 69 107.34 -58.83 REMARK 500 7 ARG A 79 41.06 -86.88 REMARK 500 7 CYS A 91 133.03 -172.16 REMARK 500 7 CYS A 107 17.64 45.77 REMARK 500 7 SER A 121 48.02 -85.31 REMARK 500 8 ASN A 9 -56.49 -154.21 REMARK 500 8 ASN A 16 20.00 -142.00 REMARK 500 8 CYS A 91 129.48 -172.21 REMARK 500 8 ILE A 119 74.14 -106.82 REMARK 500 8 THR A 120 43.35 -75.71 REMARK 500 9 THR A 19 1.32 -151.87 REMARK 500 9 ASN A 70 16.63 -152.04 REMARK 500 9 ARG A 79 63.11 -117.31 REMARK 500 9 CYS A 91 132.78 -170.28 REMARK 500 9 SER A 109 25.35 -78.62 REMARK 500 9 SER A 132 26.77 -143.91 REMARK 500 10 THR A 19 -23.99 -146.57 REMARK 500 10 LEU A 33 -68.35 -106.37 REMARK 500 10 ASN A 70 13.23 -144.92 REMARK 500 10 SER A 124 36.33 -83.66 REMARK 500 REMARK 500 THIS ENTRY HAS 89 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YT2 RELATED DB: PDB REMARK 900 AMBER MINIMIZATION REMARK 999 REMARK 999 SEQUENCE REMARK 999 REISDUES 121-134 ARE LINKER DBREF 2KUQ A 8 120 UNP O43559 FRS3_HUMAN 8 120 DBREF 2KUQ A 121 134 PDB 2KUQ 2KUQ 121 134 DBREF 2KUQ A 135 153 UNP Q9UM73 ALK_HUMAN 1571 1589 SEQADV 2KUQ GLY A 1 UNP O43559 EXPRESSION TAG SEQADV 2KUQ SER A 2 UNP O43559 EXPRESSION TAG SEQADV 2KUQ SER A 3 UNP O43559 EXPRESSION TAG SEQADV 2KUQ GLY A 4 UNP O43559 EXPRESSION TAG SEQADV 2KUQ SER A 5 UNP O43559 EXPRESSION TAG SEQADV 2KUQ SER A 6 UNP O43559 EXPRESSION TAG SEQADV 2KUQ GLY A 7 UNP O43559 EXPRESSION TAG SEQRES 1 A 153 GLY SER SER GLY SER SER GLY LEU ASN ARG ASP SER VAL SEQRES 2 A 153 PRO ASP ASN HIS PRO THR LYS PHE LYS VAL THR ASN VAL SEQRES 3 A 153 ASP ASP GLU GLY VAL GLU LEU GLY SER GLY VAL MET GLU SEQRES 4 A 153 LEU THR GLN SER GLU LEU VAL LEU HIS LEU HIS ARG ARG SEQRES 5 A 153 GLU ALA VAL ARG TRP PRO TYR LEU CYS LEU ARG ARG TYR SEQRES 6 A 153 GLY TYR ASP SER ASN LEU PHE SER PHE GLU SER GLY ARG SEQRES 7 A 153 ARG CYS GLN THR GLY GLN GLY ILE PHE ALA PHE LYS CYS SEQRES 8 A 153 SER ARG ALA GLU GLU ILE PHE ASN LEU LEU GLN ASP LEU SEQRES 9 A 153 MET GLN CYS ASN SER ILE ASN VAL MET GLU GLU PRO VAL SEQRES 10 A 153 ILE ILE THR SER GLY SER SER GLY SER SER GLY SER SER SEQRES 11 A 153 GLY SER SER GLY LEU PHE ARG LEU ARG HIS PHE PRO CYS SEQRES 12 A 153 GLY ASN VAL ASN TYR GLY TYR GLN GLN GLN HELIX 1 1 ALA A 94 CYS A 107 1 14 SHEET 1 A 8 VAL A 55 TRP A 57 0 SHEET 2 A 8 LEU A 45 HIS A 48 -1 SHEET 3 A 8 GLY A 34 GLU A 39 -1 SHEET 4 A 8 PHE A 21 VAL A 26 -1 SHEET 5 A 8 GLY A 85 LYS A 90 -1 SHEET 6 A 8 PHE A 72 SER A 76 -1 SHEET 7 A 8 ARG A 64 GLY A 66 -1 SHEET 8 A 8 VAL A 146 TYR A 148 -1 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000