PDB Short entry for 2KVQ HEADER TRANSCRIPTION 25-MAR-10 2KVQ TITLE SOLUTION STRUCTURE OF NUSE:NUSG-CTD COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUSE; COMPND 3 CHAIN: E; COMPND 4 FRAGMENT: UNP RESIDUES 1-45,68-103; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TRANSCRIPTION ANTITERMINATION PROTEIN NUSG; COMPND 8 CHAIN: G; COMPND 9 FRAGMENT: UNP RESIDUES 123-181, KOW DOMAIN; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX-6P; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 83333; SOURCE 12 STRAIN: K12; SOURCE 13 GENE: NUSG, B3982, JW3945; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR: PETGB1A KEYWDS NUSE:NUSG COMPLEX, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 18 AUTHOR B.M.BURMANN,K.SCHWEIMER,P.ROESCH REVDAT 2 16-MAR-22 2KVQ 1 REMARK SEQADV REVDAT 1 05-MAY-10 2KVQ 0 JRNL AUTH B.M.BURMANN,K.SCHWEIMER,X.LUO,M.C.WAHL,B.L.STITT, JRNL AUTH 2 M.E.GOTTESMAN,P.ROSCH JRNL TITL A NUSE:NUSG COMPLEX LINKS TRANSCRIPTION AND TRANSLATION. JRNL REF SCIENCE V. 328 501 2010 JRNL REFN ISSN 0036-8075 JRNL PMID 20413501 JRNL DOI 10.1126/SCIENCE.1184953 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR, X-PLOR NIH REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), SCHWIETERS, KUSZEWSKI, REMARK 3 TJANDRA AND CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE WAS CALCULATED USING RIGID REMARK 3 BODY DOCKING WITH EXPERIMENTAL DERIVED INTERMOLECULAR DISTANCE REMARK 3 RESTRAINTS. THE STRUCTURES OF UNBOUND NUSG-CTD (PDB 2JVV) AND REMARK 3 UNBOUND NUSE:NUSB (PDB 3D3B) WERE USED. REMARK 4 REMARK 4 2KVQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000101632. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 300 UM [U-100% 13C; U-100% 15N] REMARK 210 15N, 13C -NUSG-CTD-1, 300 UM REMARK 210 NUSE-2, 300 UM NUSB-3, 90% H2O/ REMARK 210 10% D2O; 300 UM [U-100% 13C; U- REMARK 210 100% 15N; U-80% 2H] 15N, 13C, 2H- REMARK 210 NUSE-4, 300 UM NUSB-5, 300 UM REMARK 210 NUSG-CTD-6, 90% H2O/10% D2O; 0.3 REMARK 210 MM NUSG-CTD-7, 0.3 MM [U-100% REMARK 210 13C; U-100% 15N] 15N, 13C NUSE-8, REMARK 210 0.3 MM NUSB-9, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 3D 13C FILTERED(F1)-13C EDITED REMARK 210 NOESY; 3D 13C FILTERED(F1)-133D REMARK 210 13C FILTERED(F1)-13C EDITED REMARK 210 NOESY; 3D HNCA; 3D HNCACB; 3D REMARK 210 HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, X-PLOR NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 18 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-18 REMARK 465 RES C SSSEQI REMARK 465 GLY E -4 REMARK 465 PRO E -3 REMARK 465 LEU E -2 REMARK 465 GLY E -1 REMARK 465 SER E 0 REMARK 465 MET E 1 REMARK 465 GLN E 2 REMARK 465 GLY G 119 REMARK 465 ALA G 120 REMARK 465 MET G 121 REMARK 465 GLY G 122 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO G 170 106.45 -47.95 REMARK 500 2 PRO G 170 106.47 -47.97 REMARK 500 3 ASP G 143 30.05 73.03 REMARK 500 3 PRO G 170 106.47 -47.93 REMARK 500 4 PRO G 170 106.46 -47.95 REMARK 500 5 PRO G 170 106.50 -48.05 REMARK 500 6 ASP G 143 30.00 73.02 REMARK 500 6 PRO G 170 106.47 -47.98 REMARK 500 7 PRO G 170 106.39 -47.85 REMARK 500 8 ASP G 143 30.00 73.06 REMARK 500 8 PRO G 170 106.49 -47.92 REMARK 500 9 PRO G 170 106.53 -48.04 REMARK 500 10 ASP G 143 30.02 72.97 REMARK 500 10 PRO G 170 106.53 -47.96 REMARK 500 11 PRO G 170 106.40 -47.92 REMARK 500 12 PRO G 170 106.42 -47.94 REMARK 500 13 PRO G 170 106.50 -47.92 REMARK 500 14 PRO G 170 106.44 -47.91 REMARK 500 15 ASP G 143 30.00 72.97 REMARK 500 15 PRO G 170 106.45 -47.94 REMARK 500 16 PRO G 170 106.39 -47.92 REMARK 500 17 PRO G 170 106.48 -47.98 REMARK 500 18 ASP G 143 30.02 73.08 REMARK 500 18 PRO G 170 106.51 -47.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG E 9 0.10 SIDE CHAIN REMARK 500 1 ARG E 45 0.14 SIDE CHAIN REMARK 500 1 ARG E 51 0.08 SIDE CHAIN REMARK 500 1 ARG E 68 0.13 SIDE CHAIN REMARK 500 1 ARG G 123 0.32 SIDE CHAIN REMARK 500 1 ARG G 135 0.21 SIDE CHAIN REMARK 500 1 ARG G 157 0.14 SIDE CHAIN REMARK 500 1 ARG G 167 0.32 SIDE CHAIN REMARK 500 2 ARG E 9 0.10 SIDE CHAIN REMARK 500 2 ARG E 45 0.14 SIDE CHAIN REMARK 500 2 ARG E 51 0.08 SIDE CHAIN REMARK 500 2 ARG E 68 0.13 SIDE CHAIN REMARK 500 2 ARG G 123 0.32 SIDE CHAIN REMARK 500 2 ARG G 135 0.21 SIDE CHAIN REMARK 500 2 ARG G 157 0.14 SIDE CHAIN REMARK 500 2 ARG G 167 0.32 SIDE CHAIN REMARK 500 3 ARG E 9 0.10 SIDE CHAIN REMARK 500 3 ARG E 45 0.14 SIDE CHAIN REMARK 500 3 ARG E 51 0.08 SIDE CHAIN REMARK 500 3 ARG E 68 0.13 SIDE CHAIN REMARK 500 3 ARG G 123 0.32 SIDE CHAIN REMARK 500 3 ARG G 135 0.21 SIDE CHAIN REMARK 500 3 ARG G 157 0.14 SIDE CHAIN REMARK 500 3 ARG G 167 0.32 SIDE CHAIN REMARK 500 4 ARG E 9 0.10 SIDE CHAIN REMARK 500 4 ARG E 45 0.14 SIDE CHAIN REMARK 500 4 ARG E 51 0.08 SIDE CHAIN REMARK 500 4 ARG E 68 0.13 SIDE CHAIN REMARK 500 4 ARG G 123 0.32 SIDE CHAIN REMARK 500 4 ARG G 135 0.21 SIDE CHAIN REMARK 500 4 ARG G 157 0.14 SIDE CHAIN REMARK 500 4 ARG G 167 0.32 SIDE CHAIN REMARK 500 5 ARG E 9 0.10 SIDE CHAIN REMARK 500 5 ARG E 45 0.14 SIDE CHAIN REMARK 500 5 ARG E 51 0.08 SIDE CHAIN REMARK 500 5 ARG E 68 0.13 SIDE CHAIN REMARK 500 5 ARG G 123 0.32 SIDE CHAIN REMARK 500 5 ARG G 135 0.21 SIDE CHAIN REMARK 500 5 ARG G 157 0.14 SIDE CHAIN REMARK 500 5 ARG G 167 0.32 SIDE CHAIN REMARK 500 6 ARG E 9 0.10 SIDE CHAIN REMARK 500 6 ARG E 45 0.14 SIDE CHAIN REMARK 500 6 ARG E 51 0.08 SIDE CHAIN REMARK 500 6 ARG E 68 0.13 SIDE CHAIN REMARK 500 6 ARG G 123 0.32 SIDE CHAIN REMARK 500 6 ARG G 135 0.21 SIDE CHAIN REMARK 500 6 ARG G 157 0.14 SIDE CHAIN REMARK 500 6 ARG G 167 0.32 SIDE CHAIN REMARK 500 7 ARG E 9 0.10 SIDE CHAIN REMARK 500 7 ARG E 45 0.14 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 146 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 46-67 OF CHAIN E ARE REPLACED WITH A SINGLE SER. DBREF 2KVQ E 1 45 UNP P0A7R5 RS10_ECOLI 1 45 DBREF 2KVQ E 47 82 UNP P0A7R5 RS10_ECOLI 68 103 DBREF 2KVQ G 123 181 UNP P0AFG0 NUSG_ECOLI 123 181 SEQADV 2KVQ GLY E -4 UNP P0A7R5 EXPRESSION TAG SEQADV 2KVQ PRO E -3 UNP P0A7R5 EXPRESSION TAG SEQADV 2KVQ LEU E -2 UNP P0A7R5 EXPRESSION TAG SEQADV 2KVQ GLY E -1 UNP P0A7R5 EXPRESSION TAG SEQADV 2KVQ SER E 0 UNP P0A7R5 EXPRESSION TAG SEQADV 2KVQ SER E 46 UNP P0A7R5 SEE REMARK 999 SEQADV 2KVQ GLY G 119 UNP P0AFG0 EXPRESSION TAG SEQADV 2KVQ ALA G 120 UNP P0AFG0 EXPRESSION TAG SEQADV 2KVQ MET G 121 UNP P0AFG0 EXPRESSION TAG SEQADV 2KVQ GLY G 122 UNP P0AFG0 EXPRESSION TAG SEQRES 1 E 87 GLY PRO LEU GLY SER MET GLN ASN GLN ARG ILE ARG ILE SEQRES 2 E 87 ARG LEU LYS ALA PHE ASP HIS ARG LEU ILE ASP GLN ALA SEQRES 3 E 87 THR ALA GLU ILE VAL GLU THR ALA LYS ARG THR GLY ALA SEQRES 4 E 87 GLN VAL ARG GLY PRO ILE PRO LEU PRO THR ARG SER ARG SEQRES 5 E 87 THR HIS LEU ARG LEU VAL ASP ILE VAL GLU PRO THR GLU SEQRES 6 E 87 LYS THR VAL ASP ALA LEU MET ARG LEU ASP LEU ALA ALA SEQRES 7 E 87 GLY VAL ASP VAL GLN ILE SER LEU GLY SEQRES 1 G 63 GLY ALA MET GLY ARG PRO LYS THR LEU PHE GLU PRO GLY SEQRES 2 G 63 GLU MET VAL ARG VAL ASN ASP GLY PRO PHE ALA ASP PHE SEQRES 3 G 63 ASN GLY VAL VAL GLU GLU VAL ASP TYR GLU LYS SER ARG SEQRES 4 G 63 LEU LYS VAL SER VAL SER ILE PHE GLY ARG ALA THR PRO SEQRES 5 G 63 VAL GLU LEU ASP PHE SER GLN VAL GLU LYS ALA HELIX 1 1 ASP E 14 ARG E 31 1 18 HELIX 2 2 THR E 59 LEU E 69 1 11 SHEET 1 A 4 GLN E 35 ARG E 45 0 SHEET 2 A 4 THR E 48 VAL E 56 -1 O ASP E 54 N ARG E 37 SHEET 3 A 4 ARG E 5 ALA E 12 -1 N LEU E 10 O ARG E 51 SHEET 4 A 4 ASP E 76 LEU E 81 -1 O ASP E 76 N LYS E 11 SHEET 1 B 5 ARG G 167 LEU G 173 0 SHEET 2 B 5 ARG G 157 ILE G 164 -1 N VAL G 160 O VAL G 171 SHEET 3 B 5 PHE G 144 ASP G 152 -1 N GLU G 150 O LYS G 159 SHEET 4 B 5 GLU G 132 VAL G 136 -1 N VAL G 134 O GLY G 146 SHEET 5 B 5 VAL G 178 LYS G 180 -1 O GLU G 179 N ARG G 135 CISPEP 1 GLY E 38 PRO E 39 1 0.63 CISPEP 2 GLY E 38 PRO E 39 2 0.74 CISPEP 3 GLY E 38 PRO E 39 3 0.71 CISPEP 4 GLY E 38 PRO E 39 4 0.67 CISPEP 5 GLY E 38 PRO E 39 5 0.63 CISPEP 6 GLY E 38 PRO E 39 6 0.69 CISPEP 7 GLY E 38 PRO E 39 7 0.66 CISPEP 8 GLY E 38 PRO E 39 8 0.62 CISPEP 9 GLY E 38 PRO E 39 9 0.63 CISPEP 10 GLY E 38 PRO E 39 10 0.73 CISPEP 11 GLY E 38 PRO E 39 11 0.65 CISPEP 12 GLY E 38 PRO E 39 12 0.65 CISPEP 13 GLY E 38 PRO E 39 13 0.58 CISPEP 14 GLY E 38 PRO E 39 14 0.61 CISPEP 15 GLY E 38 PRO E 39 15 0.65 CISPEP 16 GLY E 38 PRO E 39 16 0.70 CISPEP 17 GLY E 38 PRO E 39 17 0.63 CISPEP 18 GLY E 38 PRO E 39 18 0.53 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000