PDB Short entry for 2KXC HEADER PROTEIN BINDING 30-APR-10 2KXC TITLE 1H, 13C, AND 15N CHEMICAL SHIFT ASSIGNMENTS FOR IRTKS-SH3 AND ESPFU- TITLE 2 R47 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: BRAIN-SPECIFIC ANGIOGENESIS INHIBITOR 1-ASSOCIATED PROTEIN COMPND 3 2-LIKE PROTEIN 1; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: IRTKS-SH3 DOMAIN, UNP RESIDUES 339-402; COMPND 6 SYNONYM: BAI1-ASSOCIATED PROTEIN 2-LIKE PROTEIN 1, INSULIN RECEPTOR COMPND 7 TYROSINE KINASE SUBSTRATE; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: ESPF-LIKE PROTEIN; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: ESPFU-R47 DOMAIN, UNP RESIDUES 268-314; COMPND 13 SYNONYM: TIR-CYTOSKELETON COUPLING PROTEIN; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BAIAP2L1, IRTKS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET15B; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 13 ORGANISM_TAXID: 83334; SOURCE 14 STRAIN: O157:H7; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 19 EXPRESSION_SYSTEM_VECTOR: PET15B KEYWDS IRTKS-SH3, ESPFU, COMPLEX STRUCTURE, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR O.AITIO,M.HELLMAN,A.KAZLAUSKAS,D.F.VINGADASSALOM,J.M.LEONG,K.SAKSELA, AUTHOR 2 P.PERMI REVDAT 4 01-MAY-24 2KXC 1 REMARK REVDAT 3 26-FEB-20 2KXC 1 REMARK SEQADV REVDAT 2 21-SEP-11 2KXC 1 JRNL VERSN REVDAT 1 17-NOV-10 2KXC 0 JRNL AUTH O.AITIO,M.HELLMAN,A.KAZLAUSKAS,D.F.VINGADASSALOM,J.M.LEONG, JRNL AUTH 2 K.SAKSELA,P.PERMI JRNL TITL RECOGNITION OF TANDEM PXXP MOTIFS AS A UNIQUE SRC HOMOLOGY JRNL TITL 2 3-BINDING MODE TRIGGERS PATHOGEN-DRIVEN ACTIN ASSEMBLY JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 21743 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 21098279 JRNL DOI 10.1073/PNAS.1010243107 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SPARKY 3.110, AMBER 8.0 REMARK 3 AUTHORS : GODDARD (SPARKY), CASE, DARDEN, CHEATHAM, III, REMARK 3 SIMMERLING, WANG, DUKE, LUO, AND KOLLM (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KXC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000101690. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.48 MM [U-98% 13C; U-98% 15N] REMARK 210 IRTKS-SH3-1, 0.48 MM ESPFU-R47-2, REMARK 210 93% H2O/7% D2O; 0.9 MM [U-98% REMARK 210 13C; U-98% 15N] ESPFU-R47-3, 0.9 REMARK 210 MM IRTKS-SH3-4, 93% H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 3D HCCH-COSY; 2D 1H-15N REMARK 210 HSQC; 2D 1H-13C HSQC; 3D HNCACB; REMARK 210 3D CBCA(CO)NH; 3D HBHA(CO)NH; 3D REMARK 210 C(CO)NH; 3D H(CCO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA_2.1 2.1 REMARK 210 METHOD USED : MOLECULAR DYNAMICS, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY B 500 REMARK 465 LEU B 501 REMARK 465 PRO B 502 REMARK 465 ASP B 503 REMARK 465 VAL B 504 REMARK 465 ALA B 505 REMARK 465 GLN B 506 REMARK 465 ARG B 507 REMARK 465 LEU B 508 REMARK 465 MET B 509 REMARK 465 GLN B 510 REMARK 465 HIS B 511 REMARK 465 LEU B 512 REMARK 465 ALA B 513 REMARK 465 GLU B 514 REMARK 465 HIS B 515 REMARK 465 GLY B 516 REMARK 465 ILE B 517 REMARK 465 GLN B 518 REMARK 465 PRO B 519 REMARK 465 ALA B 520 REMARK 465 ARG B 521 REMARK 465 ASN B 522 REMARK 465 MET B 523 REMARK 465 ALA B 524 REMARK 465 GLU B 525 REMARK 465 GLU B 543 REMARK 465 GLN B 544 REMARK 465 SER B 545 REMARK 465 ARG B 546 REMARK 465 PRO B 547 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 3 ARG A 389 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 7 ARG A 389 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 17 ARG A 389 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 18 ARG A 389 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 20 ARG A 389 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 337 -30.30 -139.09 REMARK 500 1 LYS A 340 37.25 -144.60 REMARK 500 1 SER A 354 27.84 -143.20 REMARK 500 2 LYS A 341 80.24 -151.47 REMARK 500 2 LYS A 387 18.82 53.36 REMARK 500 2 GLU A 401 31.85 -80.60 REMARK 500 3 SER A 354 28.23 -147.77 REMARK 500 3 LYS A 387 19.08 54.41 REMARK 500 4 LYS A 387 19.49 54.91 REMARK 500 4 GLU A 401 56.65 -93.61 REMARK 500 5 SER A 354 39.10 -144.72 REMARK 500 5 LYS A 356 -41.25 -138.50 REMARK 500 5 LYS A 387 16.42 54.71 REMARK 500 5 LYS A 398 -75.11 -126.49 REMARK 500 6 SER A 354 47.43 74.93 REMARK 500 6 LYS A 387 16.91 56.37 REMARK 500 6 LYS A 398 -90.91 -127.06 REMARK 500 8 LYS A 356 -30.45 -132.25 REMARK 500 9 SER A 354 42.74 -154.00 REMARK 500 9 LYS A 387 17.57 55.96 REMARK 500 11 SER A 354 23.10 -148.44 REMARK 500 11 LYS A 387 19.92 54.49 REMARK 500 11 LYS A 398 -73.49 -133.32 REMARK 500 11 LEU A 400 -71.59 -59.79 REMARK 500 12 LYS A 387 16.71 56.32 REMARK 500 12 GLU A 401 72.60 -111.09 REMARK 500 13 LYS A 340 47.47 -109.94 REMARK 500 13 LYS A 341 75.48 -66.47 REMARK 500 13 SER A 354 -13.26 -143.61 REMARK 500 13 LYS A 398 -71.27 -128.99 REMARK 500 14 LYS A 387 17.20 54.93 REMARK 500 14 LYS A 398 -74.71 -128.26 REMARK 500 15 SER A 354 19.98 -142.27 REMARK 500 15 LYS A 387 15.83 55.72 REMARK 500 16 THR A 357 17.97 57.27 REMARK 500 16 LYS A 387 19.45 54.62 REMARK 500 16 LYS A 398 -77.79 -130.12 REMARK 500 17 LYS A 387 17.47 54.27 REMARK 500 17 LYS A 398 -80.81 -125.43 REMARK 500 17 LEU A 400 -70.40 -58.96 REMARK 500 17 VAL B 540 2.15 -67.64 REMARK 500 18 ALA A 352 33.58 -75.63 REMARK 500 18 SER A 354 39.09 -150.31 REMARK 500 18 THR A 357 19.92 59.62 REMARK 500 18 LYS A 387 19.82 55.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16909 RELATED DB: BMRB DBREF 2KXC A 339 402 UNP Q9UHR4 BI2L1_HUMAN 339 402 DBREF 2KXC B 501 547 UNP Q8X2D5 Q8X2D5_ECO57 268 314 SEQADV 2KXC GLY A 336 UNP Q9UHR4 EXPRESSION TAG SEQADV 2KXC SER A 337 UNP Q9UHR4 EXPRESSION TAG SEQADV 2KXC HIS A 338 UNP Q9UHR4 EXPRESSION TAG SEQADV 2KXC GLY B 500 UNP Q8X2D5 EXPRESSION TAG SEQRES 1 A 67 GLY SER HIS MET LYS LYS GLN LYS VAL LYS THR ILE PHE SEQRES 2 A 67 PRO HIS THR ALA GLY SER ASN LYS THR LEU LEU SER PHE SEQRES 3 A 67 ALA GLN GLY ASP VAL ILE THR LEU LEU ILE PRO GLU GLU SEQRES 4 A 67 LYS ASP GLY TRP LEU TYR GLY GLU HIS ASP VAL SER LYS SEQRES 5 A 67 ALA ARG GLY TRP PHE PRO SER SER TYR THR LYS LEU LEU SEQRES 6 A 67 GLU GLU SEQRES 1 B 48 GLY LEU PRO ASP VAL ALA GLN ARG LEU MET GLN HIS LEU SEQRES 2 B 48 ALA GLU HIS GLY ILE GLN PRO ALA ARG ASN MET ALA GLU SEQRES 3 B 48 HIS ILE PRO PRO ALA PRO ASN TRP PRO ALA PRO THR PRO SEQRES 4 B 48 PRO VAL GLN ASN GLU GLN SER ARG PRO SHEET 1 A 5 ARG A 389 PRO A 393 0 SHEET 2 A 5 TRP A 378 HIS A 383 -1 N LEU A 379 O PHE A 392 SHEET 3 A 5 VAL A 366 LEU A 369 -1 N THR A 368 O GLU A 382 SHEET 4 A 5 LYS A 343 THR A 346 -1 N VAL A 344 O ILE A 367 SHEET 5 A 5 THR A 397 LEU A 399 -1 O LYS A 398 N LYS A 345 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000