PDB Short entry for 2KY6
HEADER    TRANSCRIPTION REGULATOR                 14-MAY-10   2KY6              
TITLE     STRUCTURE OF ARC92VBD/MED25ACID                                       
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 25;    
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: VP16-BINDING-DOMAIN (VBD) ACTIVATOR-INTERACTING DOMAIN     
COMPND   5 (ACID) (UNP RESIDUES 391-553);                                       
COMPND   6 SYNONYM: MEDIATOR COMPLEX SUBUNIT 25, ACTIVATOR-RECRUITED COFACTOR 92
COMPND   7 KDA COMPONENT, ARC92, ACTIVATOR INTERACTION DOMAIN-CONTAINING PROTEIN
COMPND   8 1, P78;                                                              
COMPND   9 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: MED25, ACID1, ARC92, PTOV2, TCBAP0758;                         
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 469008;                                     
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);                                 
SOURCE   9 EXPRESSION_SYSTEM_VECTOR: P-HIS-PARALLEL;                            
SOURCE  10 OTHER_DETAILS: HIS-GB1-TEV-TAG                                       
KEYWDS    MEDIATOR, ARC, VP16 BINDING DOMAIN, ACID, TRANSCRIPTION REGULATOR     
EXPDTA    SOLUTION NMR                                                          
NUMMDL    25                                                                    
AUTHOR    A.G.MILBRADT,Z.J.SUN,P.SELENKO,K.TAKEUCHI,A.M.NAAR,G.WAGNER           
REVDAT   2   20-APR-11 2KY6    1       JRNL                                     
REVDAT   1   09-MAR-11 2KY6    0                                                
JRNL        AUTH   A.G.MILBRADT,M.KULKARNI,T.YI,K.TAKEUCHI,Z.Y.SUN,R.E.LUNA,    
JRNL        AUTH 2 P.SELENKO,A.M.NAAR,G.WAGNER                                  
JRNL        TITL   STRUCTURE OF THE VP16 TRANSACTIVATOR TARGET IN THE MEDIATOR. 
JRNL        REF    NAT.STRUCT.MOL.BIOL.          V.  18   410 2011              
JRNL        REFN                   ISSN 1545-9993                               
JRNL        PMID   21378963                                                     
JRNL        DOI    10.1038/NSMB.1999                                            
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS 1.1                                              
REMARK   3   AUTHORS     : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ         
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: CYANA CALCULATION, CNS IN WATER BOX       
REMARK   4                                                                      
REMARK   4 2KY6 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAY-10.                  
REMARK 100 THE RCSB ID CODE IS RCSB101720.                                      
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298                                
REMARK 210  PH                             : 6.5                                
REMARK 210  IONIC STRENGTH                 : 150                                
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 50-1000 UM [U-99% 15N] ARC92VBD,   
REMARK 210                                   95% H2O/5% D2O; 1.0 MM ARC92VBD,   
REMARK 210                                   100% D2O; 200-1000 UM [U-99% 13C;  
REMARK 210                                   U-99% 15N] ARC92VBD, 95% H2O/5%    
REMARK 210                                   D2O; 700 UM [U-100% 13C; U-100%    
REMARK 210                                   15N; U-80% 2H] ARC92VBD, 95% H2O/  
REMARK 210                                   5% D2O; 700 UM [ILV-100% 13C1H; U  
REMARK 210                                   -100% 15N; U-100% 2H] ARC92VBD,    
REMARK 210                                   100% D2O                           
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2D 1H-15N HSQC; 2D 1H-1H NOESY;    
REMARK 210                                   3D 1H-15N NOESY; 3D 1H-13C NOESY;  
REMARK 210                                   3D HNCO; 3D HNCA; 3D HN(CO)CA; 3D  
REMARK 210                                   HNCACB; 3D HCCH-TOCSY; 2D 1H-13C   
REMARK 210                                   HSQC; 4D HMQCNOESYHMQC             
REMARK 210  SPECTROMETER FIELD STRENGTH    : 600 MHZ; 500 MHZ; 900 MHZ; 750     
REMARK 210                                   MHZ                                
REMARK 210  SPECTROMETER MODEL             : INOVA; AVANCE                      
REMARK 210  SPECTROMETER MANUFACTURER      : VARIAN; BRUKER                     
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : CYANA 3.0, CARA 1.8.4, NMRPIPE     
REMARK 210   METHOD USED                   : SIMULATED ANNEALING, MOLECULAR     
REMARK 210                                   DYNAMICS                           
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 50                                 
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 25                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LOWEST ENERGY  
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 SER A 394       40.30    -76.67                                   
REMARK 500  1 PRO A 412       74.93    -68.99                                   
REMARK 500  1 PRO A 414      103.56    -47.62                                   
REMARK 500  1 ALA A 415      -29.39   -154.12                                   
REMARK 500  1 SER A 416     -143.25   -147.06                                   
REMARK 500  1 ASP A 418      -60.28     68.52                                   
REMARK 500  1 ALA A 419      -70.68    -53.47                                   
REMARK 500  1 ASN A 420       78.74   -106.74                                   
REMARK 500  1 PRO A 463      -36.14    -35.01                                   
REMARK 500  1 LYS A 478      -83.55   -124.39                                   
REMARK 500  1 HIS A 502       75.86    -69.78                                   
REMARK 500  1 THR A 503      -41.04   -154.37                                   
REMARK 500  1 PRO A 505       42.58    -98.36                                   
REMARK 500  1 GLU A 507      -72.98     67.91                                   
REMARK 500  1 LYS A 520       28.05     49.26                                   
REMARK 500  1 VAL A 547       70.90     73.71                                   
REMARK 500  1 LYS A 551       96.63     57.25                                   
REMARK 500  1 LEU A 552      119.81   -164.35                                   
REMARK 500  2 ALA A 415       23.60   -146.37                                   
REMARK 500  2 ASP A 418       76.96     50.14                                   
REMARK 500  2 ASN A 420       84.03   -151.88                                   
REMARK 500  2 LYS A 478      -95.61   -117.07                                   
REMARK 500  2 PRO A 501      105.31    -57.78                                   
REMARK 500  2 THR A 503      -63.31    -94.67                                   
REMARK 500  2 GLU A 507      -66.84     68.24                                   
REMARK 500  2 LYS A 520       18.18     51.30                                   
REMARK 500  2 LYS A 551      134.56     75.21                                   
REMARK 500  3 VAL A 395       22.68    -77.14                                   
REMARK 500  3 PRO A 414       59.03    -68.94                                   
REMARK 500  3 ALA A 415       14.08   -151.03                                   
REMARK 500  3 SER A 416     -159.34   -157.23                                   
REMARK 500  3 ASP A 418       78.35    -60.50                                   
REMARK 500  3 ALA A 419      -60.92   -175.59                                   
REMARK 500  3 THR A 441       32.53    -88.36                                   
REMARK 500  3 GLU A 507      -55.18     71.15                                   
REMARK 500  3 ARG A 509      -39.25   -138.44                                   
REMARK 500  3 VAL A 547       86.03     75.79                                   
REMARK 500  4 GLN A 393       43.10    -91.25                                   
REMARK 500  4 SER A 394       96.83    -68.02                                   
REMARK 500  4 ALA A 415       20.83   -174.34                                   
REMARK 500  4 SER A 416     -153.35   -136.07                                   
REMARK 500  4 ASP A 418       82.84     57.20                                   
REMARK 500  4 ALA A 419      -70.16   -123.39                                   
REMARK 500  4 PRO A 463       28.88    -72.92                                   
REMARK 500  4 LYS A 478      -71.97   -118.20                                   
REMARK 500  4 HIS A 502       91.78    -61.78                                   
REMARK 500  4 CYS A 506       22.09    -76.18                                   
REMARK 500  4 ARG A 509      -41.23   -147.73                                   
REMARK 500  4 LYS A 520       25.83     49.97                                   
REMARK 500  4 GLN A 548       32.34    -99.28                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     268 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: PLANAR GROUPS                                              
REMARK 500                                                                      
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL                 
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE                    
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN                    
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS                        
REMARK 500 AN RMSD GREATER THAN THIS VALUE                                      
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        RMS     TYPE                                    
REMARK 500  6 ARG A 469         0.08    SIDE CHAIN                              
REMARK 500 16 ARG A 425         0.11    SIDE CHAIN                              
REMARK 500 16 ARG A 469         0.08    SIDE CHAIN                              
REMARK 500 25 ARG A 469         0.08    SIDE CHAIN                              
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CHIRAL CENTERS                                             
REMARK 500                                                                      
REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL                     
REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY                      
REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR                        
REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE                                    
REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN                            
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE                   
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16)       
REMARK 500                                                                      
REMARK 500  M RES CSSEQI    IMPROPER   EXPECTED   FOUND DETAILS                 
REMARK 500 19 LYS A 520        24.8      L          L   OUTSIDE RANGE           
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
DBREF  2KY6 A  391   553  UNP    Q71SY5   MED25_HUMAN    391    553             
SEQADV 2KY6 GLY A  388  UNP  Q71SY5              EXPRESSION TAG                 
SEQADV 2KY6 GLU A  389  UNP  Q71SY5              EXPRESSION TAG                 
SEQADV 2KY6 PHE A  390  UNP  Q71SY5              EXPRESSION TAG                 
SEQRES   1 A  166  GLY GLU PHE GLY GLN GLN SER VAL SER ASN LYS LEU LEU          
SEQRES   2 A  166  ALA TRP SER GLY VAL LEU GLU TRP GLN GLU LYS PRO LYS          
SEQRES   3 A  166  PRO ALA SER VAL ASP ALA ASN THR LYS LEU THR ARG SER          
SEQRES   4 A  166  LEU PRO CYS GLN VAL TYR VAL ASN HIS GLY GLU ASN LEU          
SEQRES   5 A  166  LYS THR GLU GLN TRP PRO GLN LYS LEU ILE MET GLN LEU          
SEQRES   6 A  166  ILE PRO GLN GLN LEU LEU THR THR LEU GLY PRO LEU PHE          
SEQRES   7 A  166  ARG ASN SER ARG MET VAL GLN PHE HIS PHE THR ASN LYS          
SEQRES   8 A  166  ASP LEU GLU SER LEU LYS GLY LEU TYR ARG ILE MET GLY          
SEQRES   9 A  166  ASN GLY PHE ALA GLY CYS VAL HIS PHE PRO HIS THR ALA          
SEQRES  10 A  166  PRO CYS GLU VAL ARG VAL LEU MET LEU LEU TYR SER SER          
SEQRES  11 A  166  LYS LYS LYS ILE PHE MET GLY LEU ILE PRO TYR ASP GLN          
SEQRES  12 A  166  SER GLY PHE VAL ASN GLY ILE ARG GLN VAL ILE THR ASN          
SEQRES  13 A  166  HIS LYS GLN VAL GLN GLN GLN LYS LEU GLU                      
HELIX    1   1 LYS A  440  TRP A  444  5                                   5    
HELIX    2   2 GLN A  455  GLY A  462  1                                   8    
HELIX    3   3 PRO A  463  ARG A  466  5                                   4    
HELIX    4   4 ASP A  479  GLY A  493  1                                  15    
HELIX    5   5 ASP A  529  GLN A  546  1                                  18    
SHEET    1   A 8 LYS A 398  GLN A 409  0                                        
SHEET    2   A 8 THR A 424  ASN A 434 -1  O  CYS A 429   N  GLY A 404           
SHEET    3   A 8 SER A 468  PHE A 475 -1  O  HIS A 474   N  GLN A 430           
SHEET    4   A 8 PHE A 522  PRO A 527 -1  O  GLY A 524   N  VAL A 471           
SHEET    5   A 8 VAL A 510  TYR A 515 -1  N  LEU A 514   O  MET A 523           
SHEET    6   A 8 PHE A 494  HIS A 499 -1  N  VAL A 498   O  LEU A 511           
SHEET    7   A 8 LYS A 447  PRO A 454 -1  N  GLN A 451   O  CYS A 497           
SHEET    8   A 8 LYS A 398  GLN A 409  1  N  GLU A 407   O  LEU A 448           
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000