PDB Short entry for 2KZU HEADER APOPTOSIS 25-JUN-10 2KZU TITLE DAXX HELICAL BUNDLE (DHB) DOMAIN / RASSF1C COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEATH-ASSOCIATED PROTEIN 6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 55 TO 144; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RAS ASSOCIATION (RALGDS/AF-6) DOMAIN FAMILY 1; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 23 TO 38; COMPND 10 SYNONYM: RAS ASSOCIATION (RALGDS/AF-6) DOMAIN FAMILY 1, ISOFORM COMPND 11 CRA_A; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DAXX, DADB-159G18.9-007, DAMC-227D19.15-007, DAQB-126H3.2-007, SOURCE 6 XXBAC-BCX165D10.3-007, XXBAC-BPG185D15.6-007; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PGEX-2T; SOURCE 11 OTHER_DETAILS: CLONED WITH BAMHI ECORI; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 GENE: RASSF1, HCG_17462; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FAS DEATH-DOMAIN ASSOCIATED PROTEIN, DAXX HELICAL BUNDLE DOMAIN, RAS- KEYWDS 2 ASSOCIATION DOMAIN FAMILY 1C PROTEIN, APOPTOSIS, TUMOR SUPPRESSOR EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR E.ESCOBAR-CABRERA,D.K.W.LAU,S.GIOVINAZZI,A.M.ISHOV,L.P.MCINTOSH REVDAT 3 14-JUN-23 2KZU 1 REMARK REVDAT 2 05-FEB-20 2KZU 1 SEQADV REVDAT 1 15-DEC-10 2KZU 0 JRNL AUTH E.ESCOBAR-CABRERA,D.K.LAU,S.GIOVINAZZI,A.M.ISHOV, JRNL AUTH 2 L.P.MCINTOSH JRNL TITL STRUCTURAL CHARACTERIZATION OF THE DAXX N-TERMINAL HELICAL JRNL TITL 2 BUNDLE DOMAIN AND ITS COMPLEX WITH RASSF1C. JRNL REF STRUCTURE V. 18 1642 2010 JRNL REFN ISSN 0969-2126 JRNL PMID 21134643 JRNL DOI 10.1016/J.STR.2010.09.016 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.2, ARIA 2.2 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), LINGE, REMARK 3 O'DONOGHUE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KZU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000101779. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.1 MM [U-100% 13C; U-100% 15N] REMARK 210 DAXX-1, 1.65 MM RASSF1C-2, 95% REMARK 210 H2O/5% D2O; 1.8 MM DAXX-3, 1.2 REMARK 210 MM [U-100% 13C; U-100% 15N] REMARK 210 RASSF1C-4, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D HCCH-TOCSY; 2D 1H- REMARK 210 13C HSQC; (H)CC(CO)NH-TOCSY; REMARK 210 HCC(CO)NH-TOCSY; (HB)CB(CGCD)HD; REMARK 210 (HB)CB(CGCDCE)HE; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY; 13C/15N REMARK 210 ISOTOPE-FILTERED NOESY-HSQC; (HB) REMARK 210 CB(CGCD)HD-TOCSY; 3D 1H-15N TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 2.2 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 120 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 129 H VAL A 133 1.57 REMARK 500 HZ2 LYS A 141 O ASN A 144 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 5 TYR A 59 CE1 TYR A 59 CZ -0.142 REMARK 500 5 TYR A 59 CZ TYR A 59 CE2 0.132 REMARK 500 8 PHE A 99 CE1 PHE A 99 CZ 0.130 REMARK 500 8 PHE A 99 CZ PHE A 99 CE2 -0.132 REMARK 500 10 TYR A 59 CE1 TYR A 59 CZ -0.083 REMARK 500 10 TYR A 59 CZ TYR A 59 CE2 0.078 REMARK 500 11 TYR A 59 CE1 TYR A 59 CZ -0.081 REMARK 500 20 TYR A 59 CE1 TYR A 59 CZ -0.119 REMARK 500 20 TYR A 59 CZ TYR A 59 CE2 0.101 REMARK 500 25 TYR A 59 CE1 TYR A 59 CZ -0.121 REMARK 500 25 TYR A 59 CZ TYR A 59 CE2 0.117 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 52 -66.31 -130.12 REMARK 500 1 HIS A 53 -91.30 -158.32 REMARK 500 1 THR A 78 45.66 -87.19 REMARK 500 1 PRO A 82 21.63 -76.02 REMARK 500 1 ARG A 119 75.39 -118.99 REMARK 500 1 LYS A 140 22.93 -174.92 REMARK 500 1 SER B 27 -108.34 59.62 REMARK 500 1 ALA B 37 -158.04 -101.58 REMARK 500 2 LYS A 56 100.57 50.59 REMARK 500 2 THR A 78 42.71 -90.41 REMARK 500 2 ALA A 101 41.12 -108.09 REMARK 500 2 LYS A 140 -29.26 -143.90 REMARK 500 2 SER B 27 -82.65 -99.54 REMARK 500 2 THR B 36 -175.41 -171.71 REMARK 500 2 ALA B 37 -157.88 -113.59 REMARK 500 3 THR A 78 38.28 -85.89 REMARK 500 3 ALA A 101 41.36 -76.97 REMARK 500 3 GLU B 25 78.05 48.28 REMARK 500 3 SER B 27 -120.99 -90.95 REMARK 500 3 THR B 36 -164.11 179.55 REMARK 500 3 ALA B 37 -165.80 -125.27 REMARK 500 4 THR A 78 49.44 -88.30 REMARK 500 4 PRO A 82 28.06 -72.34 REMARK 500 4 ALA A 101 48.74 -79.25 REMARK 500 4 ALA A 139 81.38 41.49 REMARK 500 4 SER B 23 72.06 58.87 REMARK 500 4 SER B 27 -76.45 -90.12 REMARK 500 4 ALA B 37 -169.35 -117.15 REMARK 500 5 MET A 54 11.67 -157.79 REMARK 500 5 THR A 78 44.98 -86.53 REMARK 500 5 PRO A 82 25.79 -70.50 REMARK 500 5 ALA A 101 41.80 -79.21 REMARK 500 5 ALA A 139 70.51 60.27 REMARK 500 5 GLU B 25 -166.70 50.62 REMARK 500 5 SER B 27 -92.32 -92.58 REMARK 500 5 ALA B 37 -166.98 -125.47 REMARK 500 6 HIS A 53 -72.27 -89.24 REMARK 500 6 MET A 54 -97.04 -142.26 REMARK 500 6 THR A 78 41.57 -87.61 REMARK 500 6 PRO A 82 17.90 -69.13 REMARK 500 6 ALA A 139 87.68 20.22 REMARK 500 6 LYS A 140 -17.10 110.31 REMARK 500 6 LYS A 141 -73.42 -40.22 REMARK 500 6 SER B 23 54.71 -98.09 REMARK 500 6 GLU B 25 -157.16 68.05 REMARK 500 6 ASP B 26 -92.97 -95.13 REMARK 500 6 SER B 27 -124.87 169.90 REMARK 500 6 THR B 36 -165.72 -165.60 REMARK 500 6 ALA B 37 -161.15 -116.35 REMARK 500 7 THR A 78 42.18 -87.98 REMARK 500 REMARK 500 THIS ENTRY HAS 196 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2KZS RELATED DB: PDB REMARK 900 RELATED ID: 17019 RELATED DB: BMRB DBREF 2KZU A 55 144 UNP Q4VX54 Q4VX54_HUMAN 55 144 DBREF 2KZU B 23 38 UNP Q5TZT2 Q5TZT2_HUMAN 23 38 SEQADV 2KZU GLY A 51 UNP Q4VX54 EXPRESSION TAG SEQADV 2KZU SER A 52 UNP Q4VX54 EXPRESSION TAG SEQADV 2KZU HIS A 53 UNP Q4VX54 EXPRESSION TAG SEQADV 2KZU MET A 54 UNP Q4VX54 EXPRESSION TAG SEQADV 2KZU GLY B 22 UNP Q5TZT2 EXPRESSION TAG SEQADV 2KZU TRP B 39 UNP Q5TZT2 EXPRESSION TAG SEQRES 1 A 94 GLY SER HIS MET GLY LYS LYS CYS TYR LYS LEU GLU ASN SEQRES 2 A 94 GLU LYS LEU PHE GLU GLU PHE LEU GLU LEU CYS LYS MET SEQRES 3 A 94 GLN THR ALA ASP HIS PRO GLU VAL VAL PRO PHE LEU TYR SEQRES 4 A 94 ASN ARG GLN GLN ARG ALA HIS SER LEU PHE LEU ALA SER SEQRES 5 A 94 ALA GLU PHE CYS ASN ILE LEU SER ARG VAL LEU SER ARG SEQRES 6 A 94 ALA ARG SER ARG PRO ALA LYS LEU TYR VAL TYR ILE ASN SEQRES 7 A 94 GLU LEU CYS THR VAL LEU LYS ALA HIS SER ALA LYS LYS SEQRES 8 A 94 LYS LEU ASN SEQRES 1 B 18 GLY SER GLN GLU ASP SER ASP SER GLU LEU GLU GLN TYR SEQRES 2 B 18 PHE THR ALA ARG TRP HELIX 1 1 TYR A 59 THR A 78 1 20 HELIX 2 2 GLU A 83 ARG A 94 1 12 HELIX 3 3 LEU A 98 ALA A 101 5 4 HELIX 4 4 SER A 102 ARG A 119 1 18 HELIX 5 5 LYS A 122 SER A 138 1 17 HELIX 6 6 ASP B 28 GLN B 33 1 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000