PDB Short entry for 2L0S HEADER BLOOD CLOTTING 15-JUL-10 2L0S TITLE SOLUTION STRUCTURE OF HUMAN PLASMINOGEN KRINGLE 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASMINOGEN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 272-354, KRINGLE 3 DOMAIN; COMPND 5 EC: 3.4.21.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: M15; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PQE-8; SOURCE 10 OTHER_DETAILS: EXPRESSED IN 15N-LABELED M9 MINIMAL MEDIUM KEYWDS PLASMINOGEN, KRINGLE DOMAIN, SERINE PROTEASE, FIBRINOLYSIS, BLOOD KEYWDS 2 CLOTTING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.T.CHRISTEN,P.FRANK,J.SCHALLER,M.LLINAS REVDAT 3 08-SEP-10 2L0S 1 JRNL REVDAT 2 01-SEP-10 2L0S 1 JRNL REVDAT 1 04-AUG-10 2L0S 0 JRNL AUTH M.T.CHRISTEN,P.FRANK,J.SCHALLER,M.LLINAS JRNL TITL HUMAN PLASMINOGEN KRINGLE 3: SOLUTION STRUCTURE, FUNCTIONAL JRNL TITL 2 INSIGHTS, PHYLOGENETIC LANDSCAPE. JRNL REF BIOCHEMISTRY V. 49 7131 2010 JRNL REFN ISSN 0006-2960 JRNL PMID 20617841 JRNL DOI 10.1021/BI100687F REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.2 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L0S COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUL-10. REMARK 100 THE RCSB ID CODE IS RCSB101812. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : NULL; NULL REMARK 210 IONIC STRENGTH : 0; 0 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-97% 15N] HPGN RK3-1, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N TOCSY; REMARK 210 3D 1H-15N NOESY; 3D HNHA; 3D REMARK 210 HNHB; 2D 1H-1H COSY; 2D 1H-1H REMARK 210 TOCSY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, FELIX 98, CCPNMR REMARK 210 1.0, ARIA 2.2 REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING DATA COLLECTED AT PH* REMARK 210 5.7 REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG3 GLN A 23 HD2 PRO A 30 1.43 REMARK 500 HG3 LYS A 3 HA2 GLY A 6 1.51 REMARK 500 HG2 LYS A 3 HB3 TYR A 9 1.55 REMARK 500 HE22 GLN A 28 O HIS A 33 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 3 48.75 -101.17 REMARK 500 1 TYR A 9 -75.73 -38.89 REMARK 500 1 ARG A 10 -57.52 -132.13 REMARK 500 1 ASN A 12 -69.63 -106.27 REMARK 500 1 GLU A 48 -100.51 53.83 REMARK 500 1 ASN A 49 17.87 -150.33 REMARK 500 1 CYS A 51 86.67 -64.65 REMARK 500 1 THR A 66 22.41 -75.01 REMARK 500 1 ARG A 71 -95.21 -84.95 REMARK 500 1 PRO A 78 -169.91 -62.45 REMARK 500 1 SER A 79 113.11 -163.17 REMARK 500 2 LYS A 3 46.59 -93.69 REMARK 500 2 TYR A 9 -85.99 -39.18 REMARK 500 2 GLU A 48 -103.78 52.21 REMARK 500 2 ASN A 49 20.11 -149.00 REMARK 500 2 CYS A 51 90.09 -63.84 REMARK 500 2 THR A 66 23.41 -76.92 REMARK 500 2 ARG A 71 -94.06 -83.78 REMARK 500 2 PRO A 78 -175.94 -63.26 REMARK 500 3 TYR A 9 -70.92 -21.32 REMARK 500 3 ARG A 10 -78.66 -136.68 REMARK 500 3 ASN A 12 -73.64 -117.01 REMARK 500 3 GLU A 48 -105.04 48.24 REMARK 500 3 ASN A 49 16.95 -141.59 REMARK 500 3 CYS A 51 86.44 -63.44 REMARK 500 3 GLN A 69 -69.14 -91.14 REMARK 500 3 ARG A 71 -99.67 -81.09 REMARK 500 3 PRO A 78 -168.68 -59.88 REMARK 500 4 ASN A 8 37.41 -141.05 REMARK 500 4 TYR A 9 -81.17 -41.20 REMARK 500 4 ARG A 10 -62.66 -132.73 REMARK 500 4 ASN A 12 -64.07 -127.32 REMARK 500 4 GLU A 48 -103.90 50.14 REMARK 500 4 ASN A 49 14.13 -144.28 REMARK 500 4 CYS A 51 90.03 -63.94 REMARK 500 4 ARG A 71 -90.81 -77.70 REMARK 500 4 PRO A 78 -170.72 -59.43 REMARK 500 4 ASP A 81 -74.30 -69.70 REMARK 500 5 TYR A 9 -71.26 -16.63 REMARK 500 5 ARG A 10 -46.22 -140.11 REMARK 500 5 ASN A 12 -69.35 -125.40 REMARK 500 5 GLU A 48 -108.14 54.78 REMARK 500 5 ASN A 49 13.89 -142.47 REMARK 500 5 CYS A 51 91.02 -63.24 REMARK 500 5 SER A 68 33.67 -76.49 REMARK 500 5 ARG A 71 -100.07 -79.20 REMARK 500 5 PRO A 78 -173.74 -59.99 REMARK 500 6 LYS A 3 55.80 -109.73 REMARK 500 6 TYR A 9 -88.24 -11.27 REMARK 500 6 ASN A 12 -56.47 -132.52 REMARK 500 REMARK 500 THIS ENTRY HAS 202 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17062 RELATED DB: BMRB REMARK 900 CORRESPONDING ENTRY IN BMRB REMARK 900 RELATED ID: 17063 RELATED DB: BMRB REMARK 900 1H AND 15N CHEMICAL SHIFT ASSIGNMENTS OF MUTATED (K57D) REMARK 900 HUMAN PLASMINOGEN KRINGLE 3 DBREF 2L0S A -3 82 UNP P00747 PLMN_HUMAN 272 354 SEQADV 2L0S SER A 43 UNP P00747 CYS 316 ENGINEERED MUTATION SEQRES 1 A 83 THR TYR GLN CYS LEU LYS GLY THR GLY GLU ASN TYR ARG SEQRES 2 A 83 GLY ASN VAL ALA VAL THR VAL SER GLY HIS THR CYS GLN SEQRES 3 A 83 HIS TRP SER ALA GLN THR PRO HIS THR HIS ASN ARG THR SEQRES 4 A 83 PRO GLU ASN PHE PRO SER LYS ASN LEU ASP GLU ASN TYR SEQRES 5 A 83 CYS ARG ASN PRO ASP GLY LYS ARG ALA PRO TRP CYS HIS SEQRES 6 A 83 THR THR ASN SER GLN VAL ARG TRP GLU TYR CYS LYS ILE SEQRES 7 A 83 PRO SER CYS ASP SER HELIX 1 H1 GLN A -1 LEU A 2 10 3 HELIX 2 H2 THR A 21 HIS A 24 10 4 HELIX 3 H3 HIS A 31 HIS A 33 10 3 HELIX 4 HA THR A 37 ASN A 40 1 4 HELIX 5 HG PHE A 41 LYS A 44 5 4 HELIX 6 H4 TYR A 50 ARG A 52 10 3 HELIX 7 H5 TRP A 72 PRO A 78 10 7 SHEET 1 S1 2 ALA A 14 THR A 16 0 SHEET 2 S1 2 THR A 21 GLN A 23 -1 O THR A 21 N THR A 16 SHEET 1 S2 2 TRP A 62 THR A 65 0 SHEET 2 S2 2 TRP A 72 TYR A 74 -1 O GLU A 73 N CYS A 63 SSBOND 1 CYS A 1 CYS A 80 1555 1555 2.03 SSBOND 2 CYS A 22 CYS A 63 1555 1555 2.03 SSBOND 3 CYS A 51 CYS A 75 1555 1555 2.03 CISPEP 1 THR A 29 PRO A 30 1 0.92 CISPEP 2 THR A 29 PRO A 30 2 2.70 CISPEP 3 THR A 29 PRO A 30 3 0.66 CISPEP 4 THR A 29 PRO A 30 4 2.39 CISPEP 5 THR A 29 PRO A 30 5 1.97 CISPEP 6 THR A 29 PRO A 30 6 0.39 CISPEP 7 THR A 29 PRO A 30 7 -0.68 CISPEP 8 THR A 29 PRO A 30 8 1.06 CISPEP 9 THR A 29 PRO A 30 9 -0.21 CISPEP 10 THR A 29 PRO A 30 10 3.15 CISPEP 11 THR A 29 PRO A 30 11 0.30 CISPEP 12 THR A 29 PRO A 30 12 0.86 CISPEP 13 THR A 29 PRO A 30 13 1.45 CISPEP 14 THR A 29 PRO A 30 14 0.59 CISPEP 15 THR A 29 PRO A 30 15 2.18 CISPEP 16 THR A 29 PRO A 30 16 1.65 CISPEP 17 THR A 29 PRO A 30 17 3.59 CISPEP 18 THR A 29 PRO A 30 18 3.44 CISPEP 19 THR A 29 PRO A 30 19 2.24 CISPEP 20 THR A 29 PRO A 30 20 -0.66 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000