PDB Short entry for 2L14 HEADER PROTEIN BINDING 22-JUL-10 2L14 TITLE STRUCTURE OF CBP NUCLEAR COACTIVATOR BINDING DOMAIN IN COMPLEX WITH TITLE 2 P53 TAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: CREB-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CBP NUCLEAR COACTIVATOR BINDING DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CELLULAR TUMOR ANTIGEN P53; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: P53 TAD; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET21; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS P53, CBP, P300, TAD, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.LEE,M.A.MARTINEZ-YAMOUT,H.J.DYSON,P.E.WRIGHT REVDAT 2 19-JAN-11 2L14 1 JRNL REVDAT 1 03-NOV-10 2L14 0 JRNL AUTH C.W.LEE,M.A.MARTINEZ-YAMOUT,H.J.DYSON,P.E.WRIGHT JRNL TITL STRUCTURE OF THE P53 TRANSACTIVATION DOMAIN IN COMPLEX WITH JRNL TITL 2 THE NUCLEAR RECEPTOR COACTIVATOR BINDING DOMAIN OF CREB JRNL TITL 3 BINDING PROTEIN. JRNL REF BIOCHEMISTRY V. 49 9964 2010 JRNL REFN ISSN 0006-2960 JRNL PMID 20961098 JRNL DOI 10.1021/BI1012996 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 9 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLM REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L14 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-10. REMARK 100 THE RCSB ID CODE IS RCSB101824. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.05 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-99% 15N] CBP NUCLEAR REMARK 210 COACTIVATOR BINDING DOMAIN, 0.5 REMARK 210 MM [U-99% 15N] P53 TAD, 0.5 MM [U REMARK 210 -99% 13C; U-99% 15N] CBP NUCLEAR REMARK 210 COACTIVATOR BINDING DOMAIN, 0.5 REMARK 210 MM [U-99% 13C; U-99% 15N] P53 REMARK 210 TAD, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCO; 3D HNCA; REMARK 210 3D HNCACB; 3D HBHA(CO)NH; 3D HCCH REMARK 210 -TOCSY; 3D 1H-15N NOESY; 3D 1H- REMARK 210 15N TOCSY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ; 800 MHZ; 900 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : DRX; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH21 ARG A 2105 OD1 ASP B 49 1.76 REMARK 500 OD1 ASP B 21 HZ3 LYS B 24 1.78 REMARK 500 HE ARG A 2105 OD2 ASP B 49 1.78 REMARK 500 OD1 ASP A 2070 HE ARG A 2073 1.79 REMARK 500 O THR A 2074 HE21 GLN A 2083 1.82 REMARK 500 O ILE A 2102 H THR A 2106 1.82 REMARK 500 HZ2 LYS A 2103 O ASN B 30 1.83 REMARK 500 O LEU A 2071 H LEU A 2075 1.86 REMARK 500 O SER B 15 HG1 THR B 18 1.88 REMARK 500 O GLN A 2085 H ASN A 2089 1.89 REMARK 500 OD2 ASP A 2070 HH21 ARG A 2073 1.90 REMARK 500 O PRO A 2095 H ALA A 2099 1.90 REMARK 500 O PHE A 2101 H ARG A 2105 1.90 REMARK 500 HE21 GLN A 2085 OD1 ASN A 2089 1.90 REMARK 500 HZ3 LYS A 2103 O PRO B 27 1.92 REMARK 500 O MET A 2098 H ILE A 2102 1.93 REMARK 500 O LEU B 26 H GLU B 28 1.93 REMARK 500 O ASP A 2070 HG1 THR A 2074 1.94 REMARK 500 O GLN A 2086 H ILE A 2090 1.94 REMARK 500 O LEU A 2088 H LYS A 2092 1.96 REMARK 500 OE1 GLN A 2086 HD21 ASN A 2089 1.96 REMARK 500 O ARG A 2105 H LYS A 2108 1.96 REMARK 500 O THR B 18 H ASP B 21 1.96 REMARK 500 HH22 ARG A 2061 O SER A 2093 1.96 REMARK 500 O VAL A 2087 H LEU A 2091 1.97 REMARK 500 O GLN A 2082 H GLN A 2086 1.97 REMARK 500 O PRO B 47 H GLU B 51 1.98 REMARK 500 O ASP B 57 H GLY B 59 1.99 REMARK 500 O ALA A 2067 H LEU A 2071 2.01 REMARK 500 O ASP B 49 HE21 GLN B 52 2.02 REMARK 500 O ASP A 2070 H THR A 2074 2.03 REMARK 500 O GLN A 2069 H ARG A 2073 2.04 REMARK 500 O SER A 2066 H ASP A 2070 2.04 REMARK 500 HH12 ARG A 2061 O SER A 2093 2.04 REMARK 500 O LEU A 2091 H ASN A 2094 2.04 REMARK 500 O GLN A 2083 H VAL A 2087 2.07 REMARK 500 O ALA A 2099 H LYS A 2103 2.09 REMARK 500 O LEU A 2097 H PHE A 2101 2.11 REMARK 500 O ALA A 2100 H GLN A 2104 2.12 REMARK 500 O GLN A 2084 H LEU A 2088 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A2061 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 3 ARG A2073 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 4 ARG A2073 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 4 ARG A2105 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 4 ARG A2105 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 6 ARG A2073 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 9 ARG A2073 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 10 ARG A2073 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 11 ARG A2073 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 12 ARG A2073 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 12 ARG A2105 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 13 ARG A2073 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 13 ARG A2105 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 15 ARG A2073 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 16 ARG A2073 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 17 ARG A2105 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 18 ARG A2073 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 18 ARG A2105 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 19 ARG A2105 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 20 ARG A2073 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN B 16 7.03 -67.86 REMARK 500 1 PRO B 27 43.65 -72.68 REMARK 500 1 LEU B 32 -67.92 -103.96 REMARK 500 1 PRO B 36 -169.41 -77.91 REMARK 500 1 ASP B 42 17.86 -141.16 REMARK 500 2 TYR A2109 44.53 -77.98 REMARK 500 2 PRO B 27 48.47 -74.01 REMARK 500 2 LEU B 32 -4.63 -57.29 REMARK 500 2 MET B 40 16.67 -66.54 REMARK 500 3 SER A2062 -0.41 -140.28 REMARK 500 3 TYR A2109 24.06 -71.36 REMARK 500 3 GLN B 16 12.92 -66.55 REMARK 500 3 LEU B 26 63.59 29.21 REMARK 500 3 SER B 33 80.48 -166.63 REMARK 500 3 MET B 40 32.88 -81.86 REMARK 500 3 ASP B 42 30.77 -144.06 REMARK 500 3 GLU B 56 73.15 0.61 REMARK 500 4 ASN A2094 67.88 -157.16 REMARK 500 4 TYR A2109 45.14 -81.99 REMARK 500 4 THR B 18 -93.60 0.35 REMARK 500 4 VAL B 31 -15.31 -143.86 REMARK 500 4 MET B 40 38.31 -76.99 REMARK 500 4 ASP B 42 29.28 -146.73 REMARK 500 5 LEU B 26 65.36 27.24 REMARK 500 5 ASN B 29 40.16 -143.61 REMARK 500 5 ALA B 39 -6.33 -145.73 REMARK 500 5 MET B 40 25.24 -79.51 REMARK 500 5 ASP B 42 23.68 -146.32 REMARK 500 6 ASN A2060 37.99 -142.06 REMARK 500 6 LYS A2076 45.39 -74.57 REMARK 500 6 SER A2079 107.93 -54.49 REMARK 500 6 PRO B 27 33.79 -57.28 REMARK 500 6 LEU B 35 74.79 -116.31 REMARK 500 7 TYR A2109 47.44 -86.83 REMARK 500 7 GLN B 16 7.39 -66.82 REMARK 500 7 THR B 18 -156.19 -98.72 REMARK 500 7 PRO B 27 40.16 -75.46 REMARK 500 7 LEU B 43 50.88 -148.78 REMARK 500 8 TYR A2109 48.69 -80.02 REMARK 500 8 PRO B 36 -143.81 -82.59 REMARK 500 9 ASN A2094 65.94 -150.11 REMARK 500 9 GLN A2096 -71.53 -29.80 REMARK 500 9 LEU B 26 64.43 -114.78 REMARK 500 9 GLN B 38 26.41 -71.48 REMARK 500 9 ASP B 42 36.33 -145.07 REMARK 500 9 ASP B 57 70.49 -156.01 REMARK 500 10 TYR A2109 4.57 -66.05 REMARK 500 10 GLN B 16 9.07 -63.69 REMARK 500 10 PRO B 27 9.69 -61.59 REMARK 500 10 ASP B 42 -20.11 -150.31 REMARK 500 REMARK 500 THIS ENTRY HAS 105 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 4 TYR A2109 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 2L14 A 2059 2117 UNP P45481 CBP_MOUSE 2059 2117 DBREF 2L14 B 13 61 UNP P04637 P53_HUMAN 13 61 SEQRES 1 A 59 PRO ASN ARG SER ILE SER PRO SER ALA LEU GLN ASP LEU SEQRES 2 A 59 LEU ARG THR LEU LYS SER PRO SER SER PRO GLN GLN GLN SEQRES 3 A 59 GLN GLN VAL LEU ASN ILE LEU LYS SER ASN PRO GLN LEU SEQRES 4 A 59 MET ALA ALA PHE ILE LYS GLN ARG THR ALA LYS TYR VAL SEQRES 5 A 59 ALA ASN GLN PRO GLY MET GLN SEQRES 1 B 49 PRO LEU SER GLN GLU THR PHE SER ASP LEU TRP LYS LEU SEQRES 2 B 49 LEU PRO GLU ASN ASN VAL LEU SER PRO LEU PRO SER GLN SEQRES 3 B 49 ALA MET ASP ASP LEU MET LEU SER PRO ASP ASP ILE GLU SEQRES 4 B 49 GLN TRP PHE THR GLU ASP PRO GLY PRO ASP HELIX 1 1 PRO A 2065 LYS A 2076 1 12 HELIX 2 2 SER A 2080 SER A 2093 1 14 HELIX 3 3 ASN A 2094 ALA A 2107 1 14 HELIX 4 4 THR B 18 LEU B 26 1 9 HELIX 5 5 PRO B 36 ASP B 42 5 7 HELIX 6 6 SER B 46 PHE B 54 1 9 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000