PDB Short entry for 2L3Y HEADER TRANSCRIPTION 25-SEP-10 2L3Y TITLE SOLUTION STRUCTURE OF MOUSE IL-6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERLEUKIN-6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 27-211; COMPND 5 SYNONYM: IL-6, INTERLEUKIN HP-1, B-CELL HYBRIDOMA GROWTH FACTOR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: IL6, IL-6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET-21 KEYWDS CYTOKINE, INTERLEUKIN, SIGNALING, GP-130, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 52 AUTHOR V.VEVERKA,N.T.REDPATH,B.CARRINGTON,F.W.MUSKETT,R.J.TAYLOR,A.J.HENRY, AUTHOR 2 M.D.CARR REVDAT 3 02-JAN-13 2L3Y 1 JRNL REVDAT 2 21-NOV-12 2L3Y 1 JRNL REVDAT 1 28-SEP-11 2L3Y 0 JRNL AUTH V.VEVERKA,T.BAKER,N.T.REDPATH,B.CARRINGTON,F.W.MUSKETT, JRNL AUTH 2 R.J.TAYLOR,A.D.LAWSON,A.J.HENRY,M.D.CARR JRNL TITL CONSERVATION OF FUNCTIONAL SITES ON INTERLEUKIN-6 AND JRNL TITL 2 IMPLICATIONS FOR EVOLUTION OF SIGNALING COMPLEX ASSEMBLY AND JRNL TITL 3 THERAPEUTIC INTERVENTION. JRNL REF J.BIOL.CHEM. V. 287 40043 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 23027872 JRNL DOI 10.1074/JBC.M112.405597 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L3Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-SEP-10. REMARK 100 THE RCSB ID CODE IS RCSB101926. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.4 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 430 UM [U-100% 15N] IL-6, 95% REMARK 210 H2O/5% D2O; 350 UM [U-100% 13C; U REMARK 210 -100% 15N] IL-6, 95% H2O/5% D2O; REMARK 210 350 UM [U-100% 13C; U-100% 15N] REMARK 210 IL-6, 100% D2O; 400 UM IL-6, 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H TOCSY; 2D 1H-1H NOESY; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HNCO; 3D HCCH-TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-15N TOCSY; 3D 1H-13C REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, SPARKY, MOLMOL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 52 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-52 REMARK 465 RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 ALA A 2 REMARK 465 MET A 3 REMARK 465 GLY A 4 REMARK 465 SER A 5 REMARK 465 THR A 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 8 116.88 -176.77 REMARK 500 1 ASP A 13 -179.47 56.65 REMARK 500 1 ASP A 17 33.04 -175.76 REMARK 500 1 THR A 18 -174.29 53.06 REMARK 500 1 PRO A 20 -171.34 -69.85 REMARK 500 1 PRO A 23 79.54 -69.60 REMARK 500 1 CYS A 49 32.23 -95.93 REMARK 500 1 ASP A 60 31.91 -96.36 REMARK 500 1 ASN A 66 32.28 -155.71 REMARK 500 1 GLN A 73 47.60 -176.10 REMARK 500 1 ARG A 74 -64.81 -105.23 REMARK 500 1 TYR A 79 134.36 -176.54 REMARK 500 1 ILE A 87 75.50 60.01 REMARK 500 1 LEU A 89 100.67 62.72 REMARK 500 1 ASN A 109 74.24 -109.70 REMARK 500 1 HIS A 140 -169.86 -126.62 REMARK 500 1 ILE A 142 146.47 -175.94 REMARK 500 1 PRO A 145 -86.46 -69.83 REMARK 500 1 THR A 146 147.53 178.30 REMARK 500 1 LYS A 156 -177.97 58.13 REMARK 500 1 LEU A 157 78.18 -170.49 REMARK 500 1 GLU A 158 86.70 62.92 REMARK 500 1 GLN A 160 -71.37 -143.24 REMARK 500 2 GLN A 8 67.54 -118.46 REMARK 500 2 GLU A 16 -178.57 57.49 REMARK 500 2 ARG A 22 160.89 61.82 REMARK 500 2 ASP A 60 30.35 -96.35 REMARK 500 2 ASN A 66 29.98 -154.96 REMARK 500 2 ARG A 74 85.92 57.36 REMARK 500 2 GLN A 80 173.04 62.32 REMARK 500 2 GLU A 86 -52.45 -142.04 REMARK 500 2 HIS A 140 -169.92 -127.77 REMARK 500 2 ILE A 142 146.46 -175.58 REMARK 500 2 LEU A 144 87.18 -175.89 REMARK 500 2 LYS A 156 -163.20 44.58 REMARK 500 2 GLN A 160 141.63 -170.79 REMARK 500 2 GLU A 162 99.23 -178.50 REMARK 500 3 ASP A 13 -179.22 56.35 REMARK 500 3 ASP A 17 42.64 -178.71 REMARK 500 3 PRO A 20 -171.18 -69.68 REMARK 500 3 PRO A 23 98.34 -69.78 REMARK 500 3 ASN A 58 -63.91 -90.43 REMARK 500 3 GLN A 73 -42.95 -165.34 REMARK 500 3 ILE A 87 151.62 65.28 REMARK 500 3 LYS A 111 -176.02 -67.72 REMARK 500 3 LYS A 141 174.52 -56.08 REMARK 500 3 ILE A 142 144.24 -175.67 REMARK 500 3 THR A 146 72.80 65.27 REMARK 500 3 LEU A 157 90.92 -165.65 REMARK 500 3 SER A 159 174.36 59.76 REMARK 500 REMARK 500 THIS ENTRY HAS 1193 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2L3Y A 6 190 UNP P08505 IL6_MOUSE 27 211 SEQADV 2L3Y GLY A 1 UNP P08505 EXPRESSION TAG SEQADV 2L3Y ALA A 2 UNP P08505 EXPRESSION TAG SEQADV 2L3Y MET A 3 UNP P08505 EXPRESSION TAG SEQADV 2L3Y GLY A 4 UNP P08505 EXPRESSION TAG SEQADV 2L3Y SER A 5 UNP P08505 EXPRESSION TAG SEQRES 1 A 190 GLY ALA MET GLY SER THR SER GLN VAL ARG ARG GLY ASP SEQRES 2 A 190 PHE THR GLU ASP THR THR PRO ASN ARG PRO VAL TYR THR SEQRES 3 A 190 THR SER GLN VAL GLY GLY LEU ILE THR HIS VAL LEU TRP SEQRES 4 A 190 GLU ILE VAL GLU MET ARG LYS GLU LEU CYS ASN GLY ASN SEQRES 5 A 190 SER ASP CYS MET ASN ASN ASP ASP ALA LEU ALA GLU ASN SEQRES 6 A 190 ASN LEU LYS LEU PRO GLU ILE GLN ARG ASN ASP GLY CYS SEQRES 7 A 190 TYR GLN THR GLY TYR ASN GLN GLU ILE CYS LEU LEU LYS SEQRES 8 A 190 ILE SER SER GLY LEU LEU GLU TYR HIS SER TYR LEU GLU SEQRES 9 A 190 TYR MET LYS ASN ASN LEU LYS ASP ASN LYS LYS ASP LYS SEQRES 10 A 190 ALA ARG VAL LEU GLN ARG ASP THR GLU THR LEU ILE HIS SEQRES 11 A 190 ILE PHE ASN GLN GLU VAL LYS ASP LEU HIS LYS ILE VAL SEQRES 12 A 190 LEU PRO THR PRO ILE SER ASN ALA LEU LEU THR ASP LYS SEQRES 13 A 190 LEU GLU SER GLN LYS GLU TRP LEU ARG THR LYS THR ILE SEQRES 14 A 190 GLN PHE ILE LEU LYS SER LEU GLU GLU PHE LEU LYS VAL SEQRES 15 A 190 THR LEU ARG SER THR ARG GLN THR HELIX 1 1 THR A 26 LEU A 48 1 23 HELIX 2 2 ASN A 52 ASN A 57 1 6 HELIX 3 3 LEU A 62 ASN A 66 5 5 HELIX 4 4 ILE A 92 ASN A 109 1 18 HELIX 5 5 LYS A 111 HIS A 140 1 30 HELIX 6 6 ILE A 148 LYS A 156 1 9 HELIX 7 7 LEU A 164 GLN A 189 1 26 SSBOND 1 CYS A 49 CYS A 55 1555 1555 2.02 SSBOND 2 CYS A 78 CYS A 88 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000