PDB Short entry for 2L43
HEADER    TRANSCRIPTION                           01-OCT-10   2L43              
TITLE     STRUCTURAL BASIS FOR HISTONE CODE RECOGNITION BY BRPF2-PHD1 FINGER    
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: HISTONE H3.3,LINKER,BROMODOMAIN-CONTAINING PROTEIN 1;      
COMPND   3 CHAIN: A;                                                            
COMPND   4 SYNONYM: BR140-LIKE PROTEIN,BROMODOMAIN AND PHD FINGER-CONTAINING    
COMPND   5 PROTEIN 2;                                                           
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MUTATION: YES;                                                       
COMPND   8 OTHER_DETAILS: CHIMERIC PROTEIN OF HISTONE H3.3, LINKER, BRPF2 PHD1  
COMPND   9 DOMAIN                                                               
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, SYNTHETIC CONSTRUCT;              
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606, 32630;                                         
SOURCE   5 GENE: H3-3A, H3.3A, H3F3, H3F3A, PP781, H3-3B, H3.3B, H3F3B, BRD1,   
SOURCE   6 BRL, BRPF2;                                                          
SOURCE   7 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   8 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);                                 
SOURCE  10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  11 EXPRESSION_SYSTEM_PLASMID: PET22B(+)                                 
KEYWDS    PHD FINGER, HISTONE CODE, TRANSCRIPTION                               
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    S.QIN,J.ZHANG,J.WU,Y.SHI                                              
REVDAT   2   15-JAN-20 2L43    1       COMPND SOURCE REMARK DBREF               
REVDAT   2 2                   1       SEQADV                                   
REVDAT   1   31-AUG-11 2L43    0                                                
JRNL        AUTH   S.QIN,J.ZHANG,J.WU,Y.SHI                                     
JRNL        TITL   RECOGNITION OF UNMODIFIED HISTONE H3 BY THE FIRST PHD FINGER 
JRNL        TITL 2 OF BROMODOMAIN-PHD FINGER PROTEIN 2 PROVIDES INSIGHTS INTO   
JRNL        TITL 3 THE REGULATION OF HISTONE ACETYLTRANSFERASES MOZ AND MORF    
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : NMRPIPE, CNS 1.2                                     
REMARK   3   AUTHORS     : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX    
REMARK   3                 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND   
REMARK   3                 READ (CNS)                                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2L43 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-OCT-10.                  
REMARK 100 THE DEPOSITION ID IS D_1000101931.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 293                                
REMARK 210  PH                             : 6.7                                
REMARK 210  IONIC STRENGTH                 : 0.15                               
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 0.8MM [U-100% 13C; U-100% 15N]     
REMARK 210                                   PROTEIN-1, 1.6MM ZINC ION-2,       
REMARK 210                                   20MM BIS-TRIS-3, 150MM SODIUM      
REMARK 210                                   CHLORIDE-4, 90% H2O/10% D2O;       
REMARK 210                                   0.8MM [U-100% 13C; U-100% 15N]     
REMARK 210                                   PROTEIN-5, 1.6MM ZINC ION-6,       
REMARK 210                                   20MM BIS-TRIS-7, 150MM SODIUM      
REMARK 210                                   CHLORIDE-8, 100% D2O               
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2D 1H-15N HSQC; 3D CBCA(CO)NH;     
REMARK 210                                   3D HNCACB; 3D C(CO)NH; 3D          
REMARK 210                                   HBHA(CO)NH; 3D H(CCO)NH; 3D 1H-    
REMARK 210                                   15N NOESY; 3D 1H-13C NOESY         
REMARK 210  SPECTROMETER FIELD STRENGTH    : 500 MHZ                            
REMARK 210  SPECTROMETER MODEL             : DMX                                
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : SPARKY 3, TALOS, PROCHECKNMR,      
REMARK 210                                   CNS 1.2, MOLMOL                    
REMARK 210   METHOD USED                   : SIMULATED ANNEALING, TORSION       
REMARK 210                                   ANGLE DYNAMICS                     
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 200                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LOWEST         
REMARK 210                                   ENERGY                             
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;                   
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                            
REMARK 465   MODELS 1-20                                                        
REMARK 465     RES C SSSEQI                                                     
REMARK 465     LEU A    81                                                      
REMARK 465     GLU A    82                                                      
REMARK 465     HIS A    83                                                      
REMARK 465     HIS A    84                                                      
REMARK 465     HIS A    85                                                      
REMARK 465     HIS A    86                                                      
REMARK 465     HIS A    87                                                      
REMARK 465     HIS A    88                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 SER A  17      -74.35     67.12                                   
REMARK 500  1 SER A  20      103.35   -172.88                                   
REMARK 500  1 MET A  32       35.79    -95.71                                   
REMARK 500  1 GLU A  35       87.26   -157.43                                   
REMARK 500  1 GLN A  37      164.34     66.55                                   
REMARK 500  1 LEU A  50       96.35    -63.38                                   
REMARK 500  2 LYS A   9      104.27     65.03                                   
REMARK 500  2 SER A  10      -48.80   -163.64                                   
REMARK 500  2 SER A  15      -66.79     70.41                                   
REMARK 500  2 GLU A  24       79.31     64.83                                   
REMARK 500  2 MET A  32       45.68    -98.00                                   
REMARK 500  2 LEU A  50      107.98    -55.86                                   
REMARK 500  3 ARG A   8      -64.11     71.62                                   
REMARK 500  3 ILE A  22      -46.45   -151.68                                   
REMARK 500  3 ASP A  23      106.66   -160.82                                   
REMARK 500  3 ASP A  25      -80.51    -58.76                                   
REMARK 500  3 ALA A  26      165.46    177.71                                   
REMARK 500  3 SER A  36       33.42    -95.44                                   
REMARK 500  3 GLU A  64       31.83    -97.70                                   
REMARK 500  4 LYS A   9     -166.20     48.33                                   
REMARK 500  4 THR A  11       67.13   -104.13                                   
REMARK 500  4 SER A  14      113.40     68.13                                   
REMARK 500  4 GLU A  24       77.99   -163.04                                   
REMARK 500  4 MET A  32       50.75   -106.04                                   
REMARK 500  4 LEU A  50       95.59    -60.03                                   
REMARK 500  4 GLU A  64       31.65    -98.47                                   
REMARK 500  5 ARG A   8      113.38     67.93                                   
REMARK 500  5 SER A  14      165.77     67.55                                   
REMARK 500  5 SER A  18     -178.11     63.09                                   
REMARK 500  5 SER A  20       86.79     62.07                                   
REMARK 500  5 ASP A  23      171.45     66.62                                   
REMARK 500  5 MET A  32       49.03   -105.96                                   
REMARK 500  5 LEU A  50      108.96    -49.96                                   
REMARK 500  6 LYS A   9     -165.22     48.66                                   
REMARK 500  6 SER A  10      -51.35   -154.42                                   
REMARK 500  6 THR A  11      -63.15     72.83                                   
REMARK 500  6 SER A  14       46.63    -92.96                                   
REMARK 500  6 SER A  15      -65.66   -154.36                                   
REMARK 500  6 SER A  18      141.68     72.88                                   
REMARK 500  6 LEU A  21      117.81   -162.48                                   
REMARK 500  6 ASP A  23     -165.02     47.90                                   
REMARK 500  6 MET A  32       44.51    -97.61                                   
REMARK 500  6 SER A  36       31.74    -97.00                                   
REMARK 500  6 LEU A  50       95.52    -62.59                                   
REMARK 500  7 SER A  14      -50.48   -128.18                                   
REMARK 500  7 GLN A  19      -49.67   -132.39                                   
REMARK 500  7 LEU A  21      170.45     61.36                                   
REMARK 500  7 ILE A  22      147.17     71.17                                   
REMARK 500  7 ASP A  23       72.32     58.65                                   
REMARK 500  7 ASP A  25     -175.84     55.21                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     149 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              ZN A  89  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 HIS A  53   ND1                                                    
REMARK 620 2 CYS A  28   SG   96.5                                              
REMARK 620 3 CYS A  31   SG  113.6 110.4                                        
REMARK 620 4 CYS A  56   SG  116.1 107.9 111.3                                  
REMARK 620 N                    1     2     3                                   
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              ZN A  90  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A  48   SG                                                     
REMARK 620 2 CYS A  72   SG  112.4                                              
REMARK 620 3 CYS A  45   SG  107.7 104.1                                        
REMARK 620 4 CYS A  69   SG  111.3 105.0 116.2                                  
REMARK 620 N                    1     2     3                                   
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 89                   
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 90                   
DBREF  2L43 A    1    12  UNP    P84243   H33_HUMAN        2     13             
DBREF  2L43 A   13    18  PDB    2L43     2L43            13     18             
DBREF  2L43 A   19    80  UNP    O95696   BRD1_HUMAN     208    269             
SEQADV 2L43 SER A   29  UNP  O95696    CYS   218 ENGINEERED MUTATION            
SEQADV 2L43 SER A   36  UNP  O95696    CYS   225 ENGINEERED MUTATION            
SEQADV 2L43 LEU A   81  UNP  O95696              EXPRESSION TAG                 
SEQADV 2L43 GLU A   82  UNP  O95696              EXPRESSION TAG                 
SEQADV 2L43 HIS A   83  UNP  O95696              EXPRESSION TAG                 
SEQADV 2L43 HIS A   84  UNP  O95696              EXPRESSION TAG                 
SEQADV 2L43 HIS A   85  UNP  O95696              EXPRESSION TAG                 
SEQADV 2L43 HIS A   86  UNP  O95696              EXPRESSION TAG                 
SEQADV 2L43 HIS A   87  UNP  O95696              EXPRESSION TAG                 
SEQADV 2L43 HIS A   88  UNP  O95696              EXPRESSION TAG                 
SEQRES   1 A   88  ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY GLY          
SEQRES   2 A   88  SER SER GLY SER SER GLN SER LEU ILE ASP GLU ASP ALA          
SEQRES   3 A   88  VAL CYS SER ILE CYS MET ASP GLY GLU SER GLN ASN SER          
SEQRES   4 A   88  ASN VAL ILE LEU PHE CYS ASP MET CYS ASN LEU ALA VAL          
SEQRES   5 A   88  HIS GLN GLU CYS TYR GLY VAL PRO TYR ILE PRO GLU GLY          
SEQRES   6 A   88  GLN TRP LEU CYS ARG HIS CYS LEU GLN SER ARG ALA ARG          
SEQRES   7 A   88  PRO ALA LEU GLU HIS HIS HIS HIS HIS HIS                      
HET     ZN  A  89       1                                                       
HET     ZN  A  90       1                                                       
HETNAM      ZN ZINC ION                                                         
FORMUL   2   ZN    2(ZN 2+)                                                     
HELIX    1   1 HIS A   53  GLY A   58  1                                   6    
HELIX    2   2 CYS A   69  ARG A   76  1                                   8    
SHEET    1   A 2 ARG A   2  ALA A   7  0                                        
SHEET    2   A 2 SER A  39  PHE A  44 -1  O  ILE A  42   N  LYS A   4           
LINK         ND1 HIS A  53                ZN    ZN A  89     1555   1555  2.10  
LINK         SG  CYS A  28                ZN    ZN A  89     1555   1555  2.28  
LINK         SG  CYS A  48                ZN    ZN A  90     1555   1555  2.28  
LINK         SG  CYS A  72                ZN    ZN A  90     1555   1555  2.29  
LINK         SG  CYS A  31                ZN    ZN A  89     1555   1555  2.29  
LINK         SG  CYS A  45                ZN    ZN A  90     1555   1555  2.30  
LINK         SG  CYS A  69                ZN    ZN A  90     1555   1555  2.30  
LINK         SG  CYS A  56                ZN    ZN A  89     1555   1555  2.30  
SITE     1 AC1  4 CYS A  28  CYS A  31  HIS A  53  CYS A  56                    
SITE     1 AC2  4 CYS A  45  CYS A  48  CYS A  69  CYS A  72                    
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000