PDB Short entry for 2L4H HEADER METAL BINDING PROTEIN 06-OCT-10 2L4H TITLE THE SOLUTION STRUCTURE OF CALCIUM BOUND CIB1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALCIUM AND INTEGRIN-BINDING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CIB, CALCIUM- AND INTEGRIN-BINDING PROTEIN, CIBP, CALMYRIN, COMPND 5 DNA-PKCS-INTERACTING PROTEIN, KINASE-INTERACTING PROTEIN, KIP, SNK- COMPND 6 INTERACTING PROTEIN 2-28, SIP2-28; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CIB1, CIB, KIP, PRKDCIP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET19B KEYWDS CALCIUM AND INTEGRIN BINDING PROTEIN 1, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 11 AUTHOR H.HUANG,H.J.VOGEL REVDAT 3 25-MAY-11 2L4H 1 JRNL REVDAT 2 23-MAR-11 2L4H 1 JRNL REVDAT 1 09-MAR-11 2L4H 0 JRNL AUTH H.HUANG,H.ISHIDA,A.P.YAMNIUK,H.J.VOGEL JRNL TITL SOLUTION STRUCTURES OF CA2+-CIB1 AND MG2+-CIB1 AND THEIR JRNL TITL 2 INTERACTIONS WITH THE PLATELET INTEGRIN {ALPHA}IIB JRNL TITL 3 CYTOPLASMIC DOMAIN. JRNL REF J.BIOL.CHEM. V. 286 17181 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21388953 JRNL DOI 10.1074/JBC.M110.179028 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH 2.18 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TWO STEPS: 1ST STEP, 200K-20K; 2ND REMARK 3 STEP, 20K-2K REMARK 4 REMARK 4 2L4H COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-OCT-10. REMARK 100 THE RCSB ID CODE IS RCSB101945. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 200 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-13C; U-15N; U-2H] REMARK 210 CIB1, 50 MM HEPES, 100 MM REMARK 210 POTASSIUM CHLORIDE, 4 MM CALCIUM REMARK 210 CLORIDE, 10 MM DTT, 90% H2O/10% REMARK 210 D2O; 0.5 MM I/L/V METHYL 13C AND REMARK 210 1H, [U,2H] CIB1, 50 MM HEPES, 100 REMARK 210 MM POTASSIUM CHLORIDE, 4 MM REMARK 210 CALCIUM CHLORIDE, 10 MM DTT, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC IPAP; 3D HNCO REMARK 210 TYPE FOR CACO AND C'N RDC; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 11 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-11 REMARK 465 RES C SSSEQI REMARK 465 MET A -22 REMARK 465 GLY A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 HIS A -7 REMARK 465 ILE A -6 REMARK 465 ASP A -5 REMARK 465 ASP A -4 REMARK 465 ASP A -3 REMARK 465 ASP A -2 REMARK 465 LYS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 GLY A 5 REMARK 465 SER A 6 REMARK 465 ARG A 7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 107 H VAL A 190 1.47 REMARK 500 HG SER A 185 H SER A 186 1.50 REMARK 500 HG1 THR A 167 H ILE A 168 1.51 REMARK 500 O ILE A 156 H GLU A 159 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 13 -37.37 -28.92 REMARK 500 1 ASP A 18 -99.31 -60.29 REMARK 500 1 LEU A 19 137.13 152.52 REMARK 500 1 THR A 20 -45.53 -157.40 REMARK 500 1 PHE A 21 12.20 -66.86 REMARK 500 1 PRO A 39 170.13 -39.97 REMARK 500 1 PRO A 54 161.51 -49.49 REMARK 500 1 PRO A 68 -5.05 -49.24 REMARK 500 1 PHE A 69 37.89 -98.14 REMARK 500 1 THR A 79 35.66 -90.18 REMARK 500 1 ASP A 84 23.05 -141.67 REMARK 500 1 LEU A 94 -76.25 -76.84 REMARK 500 1 ASN A 124 -159.80 -75.37 REMARK 500 1 ARG A 143 85.33 -11.19 REMARK 500 1 LEU A 144 -171.53 -56.38 REMARK 500 1 ASP A 154 -78.67 -55.07 REMARK 500 1 SER A 160 39.03 -166.62 REMARK 500 1 ASN A 169 -117.19 -134.62 REMARK 500 1 GLU A 172 10.98 -51.10 REMARK 500 1 HIS A 175 -61.09 -93.05 REMARK 500 2 LEU A 13 -39.46 -28.23 REMARK 500 2 ASP A 18 -101.35 -60.51 REMARK 500 2 LEU A 19 133.81 156.12 REMARK 500 2 THR A 20 -46.49 -159.42 REMARK 500 2 PHE A 21 8.71 -65.60 REMARK 500 2 PRO A 39 169.88 -39.38 REMARK 500 2 PRO A 68 -3.79 -49.82 REMARK 500 2 PHE A 69 39.14 -96.14 REMARK 500 2 THR A 79 42.13 -92.25 REMARK 500 2 ASP A 84 25.67 -141.63 REMARK 500 2 LEU A 94 -75.25 -76.01 REMARK 500 2 ASN A 124 -160.65 -76.65 REMARK 500 2 GLU A 138 153.10 -46.68 REMARK 500 2 ARG A 143 83.03 -9.55 REMARK 500 2 LEU A 144 -169.01 -63.76 REMARK 500 2 ASP A 154 -77.11 -55.14 REMARK 500 2 SER A 160 41.54 -165.64 REMARK 500 2 ASN A 169 -118.28 -133.21 REMARK 500 2 GLU A 172 12.73 -52.22 REMARK 500 3 LEU A 13 -38.60 -27.99 REMARK 500 3 GLU A 15 -3.50 -59.80 REMARK 500 3 GLN A 17 -32.01 -39.89 REMARK 500 3 ASP A 18 -98.52 -62.38 REMARK 500 3 LEU A 19 139.51 154.01 REMARK 500 3 THR A 20 -46.65 -158.93 REMARK 500 3 PRO A 39 167.28 -38.54 REMARK 500 3 LEU A 59 -7.37 -54.82 REMARK 500 3 PRO A 68 -4.72 -49.51 REMARK 500 3 PHE A 69 41.05 -94.89 REMARK 500 3 THR A 79 35.22 -90.47 REMARK 500 REMARK 500 THIS ENTRY HAS 216 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 CA A 500 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 116 OD1 REMARK 620 2 ASP A 118 OD1 92.9 REMARK 620 3 THR A 122 O 80.3 171.2 REMARK 620 4 ASP A 120 OD2 89.9 110.1 64.7 REMARK 620 5 ASP A 127 OD2 140.8 78.1 110.6 129.1 REMARK 620 6 ASP A 120 OD1 47.8 105.6 65.8 42.1 171.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 161 OD2 REMARK 620 2 ASP A 165 OD2 121.7 REMARK 620 3 ASP A 163 OD2 71.2 51.0 REMARK 620 4 GLU A 172 OE1 64.2 142.0 123.5 REMARK 620 5 ASP A 165 OD1 132.0 44.4 75.0 161.1 REMARK 620 6 THR A 167 O 146.3 87.4 131.6 104.3 56.9 REMARK 620 7 GLU A 172 OE2 47.1 168.3 117.4 41.8 137.4 102.4 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2L4I RELATED DB: PDB REMARK 900 RELATED ID: 1XO5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CIB1 REMARK 900 RELATED ID: 1Y1A RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CIB1 DBREF 2L4H A 1 191 UNP Q99828 CIB1_HUMAN 1 191 SEQADV 2L4H MET A -22 UNP Q99828 EXPRESSION TAG SEQADV 2L4H GLY A -21 UNP Q99828 EXPRESSION TAG SEQADV 2L4H HIS A -20 UNP Q99828 EXPRESSION TAG SEQADV 2L4H HIS A -19 UNP Q99828 EXPRESSION TAG SEQADV 2L4H HIS A -18 UNP Q99828 EXPRESSION TAG SEQADV 2L4H HIS A -17 UNP Q99828 EXPRESSION TAG SEQADV 2L4H HIS A -16 UNP Q99828 EXPRESSION TAG SEQADV 2L4H HIS A -15 UNP Q99828 EXPRESSION TAG SEQADV 2L4H HIS A -14 UNP Q99828 EXPRESSION TAG SEQADV 2L4H HIS A -13 UNP Q99828 EXPRESSION TAG SEQADV 2L4H HIS A -12 UNP Q99828 EXPRESSION TAG SEQADV 2L4H HIS A -11 UNP Q99828 EXPRESSION TAG SEQADV 2L4H SER A -10 UNP Q99828 EXPRESSION TAG SEQADV 2L4H SER A -9 UNP Q99828 EXPRESSION TAG SEQADV 2L4H GLY A -8 UNP Q99828 EXPRESSION TAG SEQADV 2L4H HIS A -7 UNP Q99828 EXPRESSION TAG SEQADV 2L4H ILE A -6 UNP Q99828 EXPRESSION TAG SEQADV 2L4H ASP A -5 UNP Q99828 EXPRESSION TAG SEQADV 2L4H ASP A -4 UNP Q99828 EXPRESSION TAG SEQADV 2L4H ASP A -3 UNP Q99828 EXPRESSION TAG SEQADV 2L4H ASP A -2 UNP Q99828 EXPRESSION TAG SEQADV 2L4H LYS A -1 UNP Q99828 EXPRESSION TAG SEQADV 2L4H HIS A 0 UNP Q99828 EXPRESSION TAG SEQRES 1 A 214 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SER SEQRES 2 A 214 SER GLY HIS ILE ASP ASP ASP ASP LYS HIS MET GLY GLY SEQRES 3 A 214 SER GLY SER ARG LEU SER LYS GLU LEU LEU ALA GLU TYR SEQRES 4 A 214 GLN ASP LEU THR PHE LEU THR LYS GLN GLU ILE LEU LEU SEQRES 5 A 214 ALA HIS ARG ARG PHE CYS GLU LEU LEU PRO GLN GLU GLN SEQRES 6 A 214 ARG SER VAL GLU SER SER LEU ARG ALA GLN VAL PRO PHE SEQRES 7 A 214 GLU GLN ILE LEU SER LEU PRO GLU LEU LYS ALA ASN PRO SEQRES 8 A 214 PHE LYS GLU ARG ILE CYS ARG VAL PHE SER THR SER PRO SEQRES 9 A 214 ALA LYS ASP SER LEU SER PHE GLU ASP PHE LEU ASP LEU SEQRES 10 A 214 LEU SER VAL PHE SER ASP THR ALA THR PRO ASP ILE LYS SEQRES 11 A 214 SER HIS TYR ALA PHE ARG ILE PHE ASP PHE ASP ASP ASP SEQRES 12 A 214 GLY THR LEU ASN ARG GLU ASP LEU SER ARG LEU VAL ASN SEQRES 13 A 214 CYS LEU THR GLY GLU GLY GLU ASP THR ARG LEU SER ALA SEQRES 14 A 214 SER GLU MET LYS GLN LEU ILE ASP ASN ILE LEU GLU GLU SEQRES 15 A 214 SER ASP ILE ASP ARG ASP GLY THR ILE ASN LEU SER GLU SEQRES 16 A 214 PHE GLN HIS VAL ILE SER ARG SER PRO ASP PHE ALA SER SEQRES 17 A 214 SER PHE LYS ILE VAL LEU HET CA A 500 1 HET CA A 501 1 HETNAM CA CALCIUM ION FORMUL 2 CA 2(CA 2+) HELIX 1 1 SER A 9 ASP A 18 1 10 HELIX 2 2 THR A 23 LEU A 38 1 16 HELIX 3 3 PRO A 39 ARG A 43 5 5 HELIX 4 4 SER A 44 LEU A 49 1 6 HELIX 5 5 PRO A 54 LEU A 59 1 6 HELIX 6 6 LEU A 61 ALA A 66 1 6 HELIX 7 7 PHE A 69 SER A 78 1 10 HELIX 8 8 SER A 87 PHE A 98 1 12 HELIX 9 9 THR A 103 ASP A 116 1 14 HELIX 10 10 ASN A 124 GLU A 138 1 15 HELIX 11 11 SER A 147 ASP A 161 1 15 HELIX 12 12 LEU A 170 ARG A 179 1 10 HELIX 13 13 SER A 180 PHE A 187 1 8 LINK OD1 ASP A 116 CA CA A 500 1555 1555 2.61 LINK OD1 ASP A 118 CA CA A 500 1555 1555 2.65 LINK O THR A 122 CA CA A 500 1555 1555 2.68 LINK OD2 ASP A 161 CA CA A 501 1555 1555 2.69 LINK OD2 ASP A 165 CA CA A 501 1555 1555 2.72 LINK OD2 ASP A 120 CA CA A 500 1555 1555 2.73 LINK OD2 ASP A 163 CA CA A 501 1555 1555 2.78 LINK OD2 ASP A 127 CA CA A 500 1555 1555 2.85 LINK OE1 GLU A 172 CA CA A 501 1555 1555 2.86 LINK OD1 ASP A 165 CA CA A 501 1555 1555 2.95 LINK O THR A 167 CA CA A 501 1555 1555 2.98 LINK OE2 GLU A 172 CA CA A 501 1555 1555 3.13 LINK OD1 ASP A 120 CA CA A 500 1555 1555 3.15 SITE 1 AC1 5 ASP A 116 ASP A 118 ASP A 120 THR A 122 SITE 2 AC1 5 ASP A 127 SITE 1 AC2 5 ASP A 161 ASP A 163 ASP A 165 THR A 167 SITE 2 AC2 5 GLU A 172 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000