PDB Short entry for 2L5G HEADER TRANSCRIPTION REGULATOR 01-NOV-10 2L5G TITLE CO-ORDINATES AND 1H, 13C AND 15N CHEMICAL SHIFT ASSIGNMENTS FOR THE TITLE 2 COMPLEX OF GPS2 53-90 AND SMRT 167-207 COMPND MOL_ID: 1; COMPND 2 MOLECULE: G PROTEIN PATHWAY SUPPRESSOR 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 53-90; COMPND 5 SYNONYM: GPS2 PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN NCOR2; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 167-207; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GPS2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET13A; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: NCOR2; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET41 KEYWDS GPS2, SMRT, TBL1, CO-REPRESSOR, TRANSCRIPTION REGULATOR EXPDTA SOLUTION NMR NUMMDL 35 AUTHOR J.OBEROI,J.YANG,D.NEUHAUS,J.W.R.SCHWABE REVDAT 2 16-FEB-11 2L5G 1 JRNL REVDAT 1 02-FEB-11 2L5G 0 JRNL AUTH J.OBEROI,L.FAIRALL,P.J.WATSON,J.C.YANG,Z.CZIMMERER, JRNL AUTH 2 T.KAMPMANN,B.T.GOULT,J.A.GREENWOOD,J.T.GOOCH, JRNL AUTH 3 B.C.KALLENBERGER,L.NAGY,D.NEUHAUS,J.W.SCHWABE JRNL TITL STRUCTURAL BASIS FOR THE ASSEMBLY OF THE SMRT/NCOR CORE JRNL TITL 2 TRANSCRIPTIONAL REPRESSION MACHINERY. JRNL REF NAT.STRUCT.MOL.BIOL. V. 18 177 2011 JRNL REFN ISSN 1545-9993 JRNL PMID 21240272 JRNL DOI 10.1038/NSMB.1983 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH 2.19 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: XPLOR-NIH REMARK 4 REMARK 4 2L5G COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-NOV-10. REMARK 100 THE RCSB ID CODE IS RCSB101980. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 285 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.4 MM [U-98% 13C; U-98% 15N] REMARK 210 GPS2_53-90, 0.4 MM [U-98% 13C; U- REMARK 210 98% 15N] SMRT_167-207, 90% H2O/ REMARK 210 10% D2O; 0.4 MM [U-98% 13C; U-98% REMARK 210 15N] SMRT_167-207, 0.4 MM GPS2_ REMARK 210 53-90, 90% H2O/10% D2O; 0.4 MM [U REMARK 210 -98% 13C; U-98% 15N] GPS2_53-90, REMARK 210 0.4 MM SMRT_167-207, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-13C HSQC CT ALIPHATIC; 2D REMARK 210 1H-13C HSQC CT AROMATIC; 2D 1H-1H REMARK 210 NOESY; 2D 1H-1H NOESY (FILTERED REMARK 210 TO REMOVE 15N-COUPLED SIGNALS IN REMARK 210 F1 AND F2); 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HBHA(CO)NH; 3D REMARK 210 HCCH-COSY; 3D CCH-TOCSY; 3D C(CO) REMARK 210 NH; 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-1H NOESY REMARK 210 FILTERED TO RETAIN ONLY REMARK 210 INTERCHAIN CROSS-PEAKS; 3D HNHAHB REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; DMX; DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR_NIH 2.19, XWINNMR 3.6, REMARK 210 ANALYSIS 1.0.15 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 35 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN B 197 H GLU B 201 1.70 REMARK 500 O GLN B 198 H GLU B 202 1.75 REMARK 500 O LEU A 86 H LEU A 90 1.80 REMARK 500 O LEU A 72 H LEU A 76 1.87 REMARK 500 O LYS A 66 H LEU A 70 2.04 REMARK 500 O ILE B 190 H LYS B 194 2.07 REMARK 500 O GLN B 199 H GLU B 203 2.10 REMARK 500 O ILE B 183 H GLU B 187 2.12 REMARK 500 HE21 GLN B 199 OE1 GLU B 202 2.14 REMARK 500 O THR B 184 H GLN B 188 2.16 REMARK 500 O GLN B 189 H LEU B 193 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU B 167 -67.47 -144.88 REMARK 500 1 SER B 168 16.68 -145.39 REMARK 500 1 GLU B 170 -46.77 -148.93 REMARK 500 2 LEU B 167 -75.52 -145.75 REMARK 500 2 GLU B 170 -45.84 -150.73 REMARK 500 3 LEU B 167 -82.75 -139.78 REMARK 500 3 GLU B 170 -46.09 -150.64 REMARK 500 4 LEU B 167 -84.08 -141.86 REMARK 500 4 GLU B 170 -46.74 -148.96 REMARK 500 5 MET A 56 -45.82 -142.23 REMARK 500 5 LEU B 167 -84.07 -140.84 REMARK 500 5 GLU B 170 -45.87 -149.33 REMARK 500 6 LEU B 167 -77.59 -142.43 REMARK 500 6 GLU B 170 -46.66 -148.23 REMARK 500 6 LYS B 206 76.83 52.78 REMARK 500 7 LEU B 167 -80.03 -149.66 REMARK 500 7 GLU B 170 -46.66 -148.20 REMARK 500 8 SER B 168 18.12 -165.84 REMARK 500 8 LYS B 169 26.58 48.66 REMARK 500 8 GLU B 170 -46.56 -154.44 REMARK 500 8 LYS B 206 94.71 51.85 REMARK 500 9 LEU B 167 -79.48 -146.26 REMARK 500 9 GLU B 170 -46.49 -148.44 REMARK 500 10 LYS A 54 -169.63 -126.40 REMARK 500 10 MET A 56 -43.71 -135.03 REMARK 500 10 SER B 168 14.74 -149.14 REMARK 500 10 LYS B 169 26.21 49.94 REMARK 500 10 GLU B 170 -46.48 -150.86 REMARK 500 10 LYS B 206 87.07 52.89 REMARK 500 11 LEU B 167 -82.62 -141.74 REMARK 500 11 GLU B 170 -46.00 -148.79 REMARK 500 11 LYS B 206 84.33 53.06 REMARK 500 12 GLU A 55 28.20 -154.28 REMARK 500 12 MET A 56 -44.03 -155.79 REMARK 500 12 LEU B 167 -68.93 -144.64 REMARK 500 12 SER B 168 16.41 -145.44 REMARK 500 12 GLU B 170 -46.58 -149.14 REMARK 500 13 SER B 168 15.23 -153.07 REMARK 500 13 LYS B 169 26.19 49.78 REMARK 500 13 GLU B 170 -47.56 -150.50 REMARK 500 14 SER B 168 18.08 -167.53 REMARK 500 14 LYS B 169 26.98 48.30 REMARK 500 14 GLU B 170 -47.24 -151.32 REMARK 500 14 LYS B 206 92.07 52.83 REMARK 500 15 LEU B 167 -82.60 -141.35 REMARK 500 15 GLU B 170 -45.58 -150.99 REMARK 500 16 LEU B 167 -83.50 -141.32 REMARK 500 16 GLU B 170 -46.38 -147.95 REMARK 500 17 GLU A 55 -39.73 -169.56 REMARK 500 17 LEU B 167 -61.98 -109.46 REMARK 500 REMARK 500 THIS ENTRY HAS 122 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 59 0.31 SIDE CHAIN REMARK 500 1 ARG B 178 0.23 SIDE CHAIN REMARK 500 1 ARG B 181 0.26 SIDE CHAIN REMARK 500 2 ARG A 59 0.26 SIDE CHAIN REMARK 500 2 ARG B 178 0.25 SIDE CHAIN REMARK 500 2 ARG B 181 0.31 SIDE CHAIN REMARK 500 3 ARG A 59 0.23 SIDE CHAIN REMARK 500 3 ARG B 178 0.22 SIDE CHAIN REMARK 500 3 ARG B 181 0.26 SIDE CHAIN REMARK 500 4 ARG A 59 0.26 SIDE CHAIN REMARK 500 4 ARG B 178 0.31 SIDE CHAIN REMARK 500 4 ARG B 181 0.25 SIDE CHAIN REMARK 500 5 ARG A 59 0.31 SIDE CHAIN REMARK 500 5 ARG B 178 0.22 SIDE CHAIN REMARK 500 5 ARG B 181 0.31 SIDE CHAIN REMARK 500 6 ARG A 59 0.23 SIDE CHAIN REMARK 500 6 ARG B 178 0.21 SIDE CHAIN REMARK 500 6 ARG B 181 0.32 SIDE CHAIN REMARK 500 7 ARG A 59 0.32 SIDE CHAIN REMARK 500 7 ARG B 178 0.22 SIDE CHAIN REMARK 500 7 ARG B 181 0.24 SIDE CHAIN REMARK 500 8 ARG A 59 0.29 SIDE CHAIN REMARK 500 8 ARG B 178 0.23 SIDE CHAIN REMARK 500 8 ARG B 181 0.30 SIDE CHAIN REMARK 500 9 ARG A 59 0.23 SIDE CHAIN REMARK 500 9 ARG B 178 0.31 SIDE CHAIN REMARK 500 9 ARG B 181 0.25 SIDE CHAIN REMARK 500 10 ARG A 59 0.30 SIDE CHAIN REMARK 500 10 ARG B 178 0.32 SIDE CHAIN REMARK 500 10 ARG B 181 0.32 SIDE CHAIN REMARK 500 11 ARG A 59 0.28 SIDE CHAIN REMARK 500 11 ARG B 178 0.22 SIDE CHAIN REMARK 500 11 ARG B 181 0.25 SIDE CHAIN REMARK 500 12 ARG A 59 0.28 SIDE CHAIN REMARK 500 12 ARG B 178 0.22 SIDE CHAIN REMARK 500 12 ARG B 181 0.24 SIDE CHAIN REMARK 500 13 ARG A 59 0.21 SIDE CHAIN REMARK 500 13 ARG B 178 0.31 SIDE CHAIN REMARK 500 13 ARG B 181 0.32 SIDE CHAIN REMARK 500 14 ARG A 59 0.30 SIDE CHAIN REMARK 500 14 ARG B 178 0.24 SIDE CHAIN REMARK 500 14 ARG B 181 0.32 SIDE CHAIN REMARK 500 15 ARG A 59 0.32 SIDE CHAIN REMARK 500 15 ARG B 178 0.30 SIDE CHAIN REMARK 500 15 ARG B 181 0.27 SIDE CHAIN REMARK 500 16 ARG A 59 0.31 SIDE CHAIN REMARK 500 16 ARG B 178 0.25 SIDE CHAIN REMARK 500 16 ARG B 181 0.32 SIDE CHAIN REMARK 500 17 ARG A 59 0.26 SIDE CHAIN REMARK 500 17 ARG B 178 0.24 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 105 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2L5G A 53 90 UNP Q6FHM8 Q6FHM8_HUMAN 53 90 DBREF 2L5G B 167 207 UNP C9JQE8 C9JQE8_HUMAN 167 207 SEQADV 2L5G GLY B 166 UNP C9JQE8 EXPRESSION TAG SEQRES 1 A 38 LYS LYS GLU MET GLU GLU ARG MET SER LEU GLU GLU THR SEQRES 2 A 38 LYS GLU GLN ILE LEU LYS LEU GLU GLU LYS LEU LEU ALA SEQRES 3 A 38 LEU GLN GLU GLU LYS HIS GLN LEU PHE LEU GLN LEU SEQRES 1 B 42 GLY LEU SER LYS GLU GLU LEU ILE GLN ASN MET ASP ARG SEQRES 2 B 42 VAL ASP ARG GLU ILE THR MET VAL GLU GLN GLN ILE SER SEQRES 3 B 42 LYS LEU LYS LYS LYS GLN GLN GLN LEU GLU GLU GLU ALA SEQRES 4 B 42 ALA LYS PRO HELIX 1 1 MET A 56 LEU A 90 1 35 HELIX 2 2 GLU B 170 LYS B 206 1 37 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000