PDB Short entry for 2L5V HEADER PROTEIN BINDING 08-NOV-10 2L5V TITLE SOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN OF HRPN13 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEASOMAL UBIQUITIN RECEPTOR ADRM1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 SYNONYM: 110 KDA CELL MEMBRANE GLYCOPROTEIN, GP110, ADHESION- COMPND 6 REGULATING MOLECULE 1, ARM-1, PROTEASOME REGULATORY PARTICLE NON- COMPND 7 ATPASE 13, HRPN13, RPN13 HOMOLOG; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ADRM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-MG KEYWDS RPN13, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Z.ZHOU,H.HU REVDAT 3 14-JUN-23 2L5V 1 REMARK REVDAT 2 26-FEB-20 2L5V 1 REMARK SEQADV REVDAT 1 09-NOV-11 2L5V 0 JRNL AUTH Z.ZHOU,H.HU JRNL TITL SOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN OF HRPN13 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L5V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-NOV-10. REMARK 100 THE DEPOSITION ID IS D_1000101995. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.075 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM SODIUM PHOSPHATE-1, 50MM REMARK 210 SODIUM CHLORIDE-2, 1MM DTT-3, REMARK 210 1.2MM HRPN13-4, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 3D HNCACO; REMARK 210 3D C(CO)NH; 3D H(CCO)NH; 3D HCCH- REMARK 210 TOCSY; 3D CCH-COSY; 2D (HB) REMARK 210 CB(CGCD)HD; 2D (HB)CB(CGCDCE)HE; REMARK 210 3D 1H-15N NOESY-HSQC; 3D 1H-13C REMARK 210 NOESY-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 260 76.68 58.97 REMARK 500 1 ILE A 262 91.29 58.84 REMARK 500 1 GLN A 263 -52.71 64.62 REMARK 500 1 LEU A 264 -55.61 72.82 REMARK 500 1 ALA A 281 -69.79 69.55 REMARK 500 1 GLN A 284 -73.30 -154.79 REMARK 500 1 VAL A 291 -36.88 -138.40 REMARK 500 1 GLU A 318 -51.86 71.92 REMARK 500 1 PRO A 321 107.32 -53.70 REMARK 500 1 LEU A 331 -86.87 63.71 REMARK 500 1 PRO A 334 -37.68 -37.79 REMARK 500 1 GLN A 351 94.65 65.29 REMARK 500 1 LYS A 390 -50.16 -154.67 REMARK 500 1 GLU A 391 126.80 70.80 REMARK 500 1 THR A 394 76.94 58.31 REMARK 500 1 ASP A 396 154.96 67.32 REMARK 500 1 LYS A 398 -62.74 -100.47 REMARK 500 1 ASP A 399 -166.20 53.09 REMARK 500 1 GLU A 400 -40.66 -135.28 REMARK 500 1 SER A 405 16.05 -156.57 REMARK 500 2 ILE A 262 81.54 53.14 REMARK 500 2 THR A 273 -77.39 69.00 REMARK 500 2 GLN A 285 89.74 64.63 REMARK 500 2 GLU A 318 -77.99 -116.39 REMARK 500 2 LEU A 331 -156.15 61.61 REMARK 500 2 THR A 332 103.76 -56.43 REMARK 500 2 GLN A 351 94.45 63.16 REMARK 500 2 PRO A 362 152.99 -48.83 REMARK 500 2 PRO A 387 -158.86 -67.23 REMARK 500 2 GLN A 389 91.73 58.15 REMARK 500 2 GLU A 401 29.69 -145.18 REMARK 500 2 MET A 404 -86.83 67.34 REMARK 500 3 GLN A 260 98.59 61.16 REMARK 500 3 GLN A 284 -50.02 -120.74 REMARK 500 3 GLN A 285 82.61 59.85 REMARK 500 3 ASP A 287 93.86 -69.11 REMARK 500 3 GLU A 318 -83.28 -93.82 REMARK 500 3 LEU A 331 -86.65 64.05 REMARK 500 3 GLN A 351 92.42 59.73 REMARK 500 3 PRO A 354 22.10 -72.00 REMARK 500 3 LYS A 395 -54.30 -169.31 REMARK 500 3 ASP A 396 -75.17 -104.09 REMARK 500 3 LYS A 398 -51.42 71.90 REMARK 500 3 MET A 404 124.00 72.51 REMARK 500 4 ILE A 262 109.39 66.23 REMARK 500 4 VAL A 291 -38.71 -136.39 REMARK 500 4 GLU A 318 -88.29 -107.40 REMARK 500 4 THR A 323 145.07 67.86 REMARK 500 4 GLN A 351 118.59 -29.30 REMARK 500 4 GLN A 382 -64.77 -90.14 REMARK 500 REMARK 500 THIS ENTRY HAS 234 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17286 RELATED DB: BMRB DBREF 2L5V A 260 407 UNP Q16186 ADRM1_HUMAN 260 407 SEQADV 2L5V GLY A 258 UNP Q16186 EXPRESSION TAG SEQADV 2L5V SER A 259 UNP Q16186 EXPRESSION TAG SEQRES 1 A 150 GLY SER GLN PRO ILE GLN LEU SER ASP LEU GLN SER ILE SEQRES 2 A 150 LEU ALA THR MET ASN VAL PRO ALA GLY PRO ALA GLY GLY SEQRES 3 A 150 GLN GLN VAL ASP LEU ALA SER VAL LEU THR PRO GLU ILE SEQRES 4 A 150 MET ALA PRO ILE LEU ALA ASN ALA ASP VAL GLN GLU ARG SEQRES 5 A 150 LEU LEU PRO TYR LEU PRO SER GLY GLU SER LEU PRO GLN SEQRES 6 A 150 THR ALA ASP GLU ILE GLN ASN THR LEU THR SER PRO GLN SEQRES 7 A 150 PHE GLN GLN ALA LEU GLY MET PHE SER ALA ALA LEU ALA SEQRES 8 A 150 SER GLY GLN LEU GLY PRO LEU MET CYS GLN PHE GLY LEU SEQRES 9 A 150 PRO ALA GLU ALA VAL GLU ALA ALA ASN LYS GLY ASP VAL SEQRES 10 A 150 GLU ALA PHE ALA LYS ALA MET GLN ASN ASN ALA LYS PRO SEQRES 11 A 150 GLU GLN LYS GLU GLY ASP THR LYS ASP LYS LYS ASP GLU SEQRES 12 A 150 GLU GLU ASP MET SER LEU ASP HELIX 1 1 LEU A 264 ILE A 270 1 7 HELIX 2 2 LEU A 271 THR A 273 5 3 HELIX 3 3 ASP A 287 VAL A 291 5 5 HELIX 4 4 THR A 293 ALA A 302 1 10 HELIX 5 5 ASN A 303 LEU A 311 1 9 HELIX 6 6 PRO A 312 LEU A 314 5 3 HELIX 7 7 THR A 323 LEU A 331 1 9 HELIX 8 8 SER A 333 GLY A 350 1 18 HELIX 9 9 GLY A 353 PHE A 359 1 7 HELIX 10 10 PRO A 362 GLY A 372 1 11 HELIX 11 11 ASP A 373 LYS A 386 1 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000