PDB Short entry for 2L71 HEADER HORMONE 01-DEC-10 2L71 TITLE NMR SOLUTION STRUCTURE OF GIP IN BICELLULAR MEDIA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GASTRIC INHIBITORY POLYPEPTIDE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GIP, GLUCOSE-DEPENDENT INSULINOTROPIC POLYPEPTIDE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606; SOURCE 6 OTHER_DETAILS: SYNTHESIZED ON A PEPTIDE SYNTHESIZER USING STANDARD SOURCE 7 SOLID-PHASE FMOC PROCEDURE KEYWDS GIP, DOCKING, ALA-SCAN, TYPE 2 DIABETES, HORMONE EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR K.C.VENNETI,I.ALANA,F.P.M.O'HARTE,P.J.G.MALTHOUSE,C.M.HEWAGE REVDAT 3 14-JUN-23 2L71 1 REMARK REVDAT 2 26-FEB-20 2L71 1 REMARK REVDAT 1 19-OCT-11 2L71 0 JRNL AUTH K.C.VENNETI,J.P.G.MALTHOUSE,F.P.M.O'HARTE,C.M.HEWAGE JRNL TITL CONFORMATIONAL, RECEPTOR INTERACTION AND ALANINE SCAN JRNL TITL 2 STUDIES OF GLUCOSE-DEPENDENT INSULINOTROPIC POLYPEPTIDE JRNL REF BIOCHIM.BIOPHYS.ACTA V.1814 882 2011 JRNL REFN ISSN 0006-3002 JRNL PMID 21539943 JRNL DOI 10.1016/J.BBAPAP.2011.04.002 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0, CYANA 2.0 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L71 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000102037. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 3.9 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 100MM DHPC; 250MM DMPC; 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D 1H-1H NOESY; REMARK 210 2D DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 TRP A 25 CE2 - CD2 - CG ANGL. DEV. = -4.9 DEGREES REMARK 500 2 TRP A 25 CE2 - CD2 - CG ANGL. DEV. = -4.9 DEGREES REMARK 500 2 TRP A 36 CE2 - CD2 - CG ANGL. DEV. = -4.9 DEGREES REMARK 500 3 TRP A 25 CE2 - CD2 - CG ANGL. DEV. = -4.9 DEGREES REMARK 500 3 TRP A 36 CE2 - CD2 - CG ANGL. DEV. = -4.8 DEGREES REMARK 500 5 TRP A 36 CE2 - CD2 - CG ANGL. DEV. = -4.9 DEGREES REMARK 500 6 TRP A 25 CE2 - CD2 - CG ANGL. DEV. = -4.8 DEGREES REMARK 500 7 TRP A 25 CE2 - CD2 - CG ANGL. DEV. = -5.0 DEGREES REMARK 500 7 TRP A 36 CE2 - CD2 - CG ANGL. DEV. = -4.8 DEGREES REMARK 500 9 TRP A 25 CE2 - CD2 - CG ANGL. DEV. = -4.8 DEGREES REMARK 500 9 TRP A 36 CE2 - CD2 - CG ANGL. DEV. = -4.9 DEGREES REMARK 500 10 TRP A 25 CE2 - CD2 - CG ANGL. DEV. = -4.8 DEGREES REMARK 500 11 TRP A 25 CE2 - CD2 - CG ANGL. DEV. = -5.0 DEGREES REMARK 500 12 TRP A 25 CE2 - CD2 - CG ANGL. DEV. = -4.8 DEGREES REMARK 500 13 SER A 11 N - CA - CB ANGL. DEV. = 9.1 DEGREES REMARK 500 13 TRP A 25 CE2 - CD2 - CG ANGL. DEV. = -4.8 DEGREES REMARK 500 13 TRP A 36 CE2 - CD2 - CG ANGL. DEV. = -4.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 9 -74.71 -165.64 REMARK 500 1 TYR A 10 -56.61 -169.15 REMARK 500 1 SER A 11 55.95 -146.08 REMARK 500 1 ASP A 35 49.90 -92.88 REMARK 500 1 TRP A 36 -60.95 -162.79 REMARK 500 1 HIS A 38 44.25 -104.76 REMARK 500 2 SER A 8 -86.04 -72.91 REMARK 500 2 ASP A 9 52.80 -163.47 REMARK 500 2 TYR A 10 -96.18 52.01 REMARK 500 2 SER A 11 49.91 -150.49 REMARK 500 2 ILE A 12 -71.03 -127.86 REMARK 500 2 MET A 14 -61.18 -165.34 REMARK 500 2 TRP A 36 -68.45 -156.78 REMARK 500 3 SER A 8 -102.34 -67.95 REMARK 500 3 ASP A 9 58.39 -162.73 REMARK 500 3 TYR A 10 -105.81 58.06 REMARK 500 3 SER A 11 -65.05 -159.32 REMARK 500 3 ALA A 28 35.25 -98.49 REMARK 500 3 TRP A 36 -59.71 -168.46 REMARK 500 4 TYR A 10 -70.90 72.58 REMARK 500 4 SER A 11 63.02 -161.83 REMARK 500 4 ILE A 12 -70.65 -134.50 REMARK 500 4 ALA A 13 59.43 -111.01 REMARK 500 4 MET A 14 -65.15 -147.98 REMARK 500 4 TRP A 36 -62.78 -149.20 REMARK 500 4 THR A 41 114.00 -19.46 REMARK 500 5 ASP A 9 -68.16 -156.69 REMARK 500 5 TYR A 10 -74.24 -155.16 REMARK 500 5 SER A 11 -55.01 172.98 REMARK 500 5 ASP A 35 40.44 -93.80 REMARK 500 5 TRP A 36 -61.37 -168.92 REMARK 500 6 TYR A 10 -74.68 72.62 REMARK 500 6 SER A 11 57.80 -162.18 REMARK 500 6 ILE A 12 -77.74 -135.92 REMARK 500 6 GLN A 29 -124.63 65.50 REMARK 500 6 TRP A 36 -63.32 -164.42 REMARK 500 6 HIS A 38 -54.92 -159.71 REMARK 500 6 ASN A 39 -38.03 -36.30 REMARK 500 7 TYR A 10 -74.61 69.19 REMARK 500 7 SER A 11 -57.60 -163.51 REMARK 500 7 ILE A 12 -61.18 78.57 REMARK 500 7 ALA A 13 55.92 -105.72 REMARK 500 7 TRP A 36 -63.13 -155.04 REMARK 500 8 ALA A 2 82.67 -66.16 REMARK 500 8 TYR A 10 -85.49 62.50 REMARK 500 8 SER A 11 49.11 -148.91 REMARK 500 8 ILE A 12 -70.37 -117.87 REMARK 500 8 ASP A 21 -71.40 -61.88 REMARK 500 8 TRP A 36 -63.29 -161.88 REMARK 500 8 HIS A 38 50.02 73.92 REMARK 500 REMARK 500 THIS ENTRY HAS 94 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 14 TYR A 10 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1T5Q RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF GIP(1-30) AMIDE IN TFE/WATER REMARK 900 RELATED ID: 2B4N RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF GIP REMARK 900 RELATED ID: 2OBU RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF GIP IN TFE/WATER REMARK 900 RELATED ID: 2L70 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF GIP IN MICELLULAR MEDIA REMARK 900 RELATED ID: 17331 RELATED DB: BMRB DBREF 2L71 A 1 42 UNP P09681 GIP_HUMAN 52 93 SEQRES 1 A 42 TYR ALA GLU GLY THR PHE ILE SER ASP TYR SER ILE ALA SEQRES 2 A 42 MET ASP LYS ILE HIS GLN GLN ASP PHE VAL ASN TRP LEU SEQRES 3 A 42 LEU ALA GLN LYS GLY LYS LYS ASN ASP TRP LYS HIS ASN SEQRES 4 A 42 ILE THR GLN HELIX 1 1 ILE A 12 ASP A 35 1 24 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000