PDB Short entry for 2L82 HEADER DE NOVO PROTEIN 31-DEC-10 2L82 TITLE SOLUTION NMR STRUCTURE OF DE NOVO DESIGNED PROTEIN, P-LOOP NTPASE TITLE 2 FOLD, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET OR32 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DESIGNED PROTEIN OR32; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTIFICIAL GENE; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR: PET29B+ KEYWDS STRUCTURAL GENOMICS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) KEYWDS 2 PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, DE NOVO PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.LIU,N.KOGA,R.KOGA,R.XIAO,K.HAMILTON,H.JANJUA,S.TONG,T.B.ACTON, AUTHOR 2 J.EVERETT,D.BAKER,G.T.MONTELIONE,NORTHEAST STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (NESG) REVDAT 2 14-JUN-23 2L82 1 REMARK REVDAT 1 09-FEB-11 2L82 0 JRNL AUTH G.LIU,N.KOGA,R.KOGA,R.XIAO,K.HAMILTON,H.JANJUA,S.TONG, JRNL AUTH 2 T.B.ACTON,J.EVERETT,D.BAKER,G.T.MONTELIONE JRNL TITL NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET OR32 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CYANA 3.0, AUTOSTRUCTURE 2.1, CYANA, CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), HUANG, TEJERO, REMARK 3 POWERS AND MONTELIONE (AUTOSTRUCTURE), BRUNGER,ADAMS,CLORE, REMARK 3 DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L82 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000102073. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.06 MM [U-100% 13C; U-100% 15N] REMARK 210 OR32, 90% H2O/10% D2O; 0.85 MM REMARK 210 [U-5% 13C; U-100% 15N] OR32, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D 1H-13C AROM NOESY; 3D REMARK 210 SIMUTANEOUS 13C-AROMATIC,13C- REMARK 210 ALIPHATIC,15N EDITED 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS, CYANA 3.0, AUTOSTRUCTURE REMARK 210 2.1, AUTOASSIGN 2.1, NMRPIPE, REMARK 210 XEASY, TOPSPIN, VNMRJ, PINE, REMARK 210 SPARKY, TALOS+, PALES, REDCAT REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 79 39.16 -75.82 REMARK 500 1 ARG A 126 109.16 -59.85 REMARK 500 1 SER A 127 -169.43 -107.89 REMARK 500 1 SER A 154 -63.20 -147.08 REMARK 500 1 LEU A 155 -158.67 -132.29 REMARK 500 2 SER A 2 60.85 63.46 REMARK 500 2 ASP A 79 25.65 -75.74 REMARK 500 2 HIS A 157 81.87 -164.07 REMARK 500 3 SER A 2 96.19 -67.96 REMARK 500 3 GLU A 59 -36.36 -144.87 REMARK 500 3 ASP A 79 38.91 -76.06 REMARK 500 4 SER A 2 79.87 -102.83 REMARK 500 4 THR A 86 166.35 178.07 REMARK 500 4 ASP A 115 -70.74 -126.76 REMARK 500 4 LEU A 155 80.14 -67.03 REMARK 500 4 GLU A 156 10.80 42.10 REMARK 500 5 ASP A 79 36.87 -74.47 REMARK 500 5 LEU A 155 86.23 61.79 REMARK 500 5 HIS A 157 53.28 -167.76 REMARK 500 5 HIS A 158 -71.70 -140.20 REMARK 500 5 HIS A 161 31.20 -76.68 REMARK 500 6 ASP A 79 40.30 -78.40 REMARK 500 6 THR A 85 42.62 -82.12 REMARK 500 6 THR A 86 149.36 -173.36 REMARK 500 6 ASP A 114 89.72 -58.35 REMARK 500 6 SER A 127 -164.82 -112.77 REMARK 500 6 HIS A 158 -56.65 78.06 REMARK 500 8 SER A 2 141.10 -178.42 REMARK 500 8 GLU A 59 -35.54 -139.40 REMARK 500 8 ASP A 79 41.08 -80.54 REMARK 500 8 THR A 85 54.02 -95.00 REMARK 500 8 SER A 154 33.10 -85.15 REMARK 500 8 HIS A 160 86.60 -68.75 REMARK 500 9 ASP A 79 29.87 -77.92 REMARK 500 9 LEU A 155 32.07 -90.95 REMARK 500 10 SER A 2 87.56 -69.54 REMARK 500 10 ASP A 79 27.77 -78.06 REMARK 500 10 ASP A 128 101.96 -54.67 REMARK 500 11 ASP A 79 25.99 -74.53 REMARK 500 11 HIS A 158 -39.19 -133.68 REMARK 500 11 HIS A 159 39.74 -75.61 REMARK 500 12 SER A 2 88.85 -69.99 REMARK 500 12 GLU A 59 -40.94 -147.74 REMARK 500 12 TYR A 75 78.71 -119.85 REMARK 500 12 ASP A 79 40.60 -77.64 REMARK 500 12 SER A 127 -169.01 -162.32 REMARK 500 12 SER A 154 104.21 -163.81 REMARK 500 12 GLU A 156 83.71 -68.55 REMARK 500 12 HIS A 157 54.07 -96.76 REMARK 500 12 HIS A 161 -28.93 74.01 REMARK 500 REMARK 500 THIS ENTRY HAS 83 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17390 RELATED DB: BMRB REMARK 900 RELATED ID: OR32 RELATED DB: TARGETDB DBREF 2L82 A 1 162 PDB 2L82 2L82 1 162 SEQRES 1 A 162 MET SER GLN ILE PHE VAL VAL PHE SER SER ASP PRO GLU SEQRES 2 A 162 ILE LEU LYS GLU ILE VAL ARG GLU ILE LYS ARG GLN GLY SEQRES 3 A 162 VAL ARG VAL VAL LEU LEU TYR SER ASP GLN ASP GLU LYS SEQRES 4 A 162 ARG ARG ARG GLU ARG LEU GLU GLU PHE GLU LYS GLN GLY SEQRES 5 A 162 VAL ASP VAL ARG THR VAL GLU ASP LYS GLU ASP PHE ARG SEQRES 6 A 162 GLU ASN ILE ARG GLU ILE TRP GLU ARG TYR PRO GLN LEU SEQRES 7 A 162 ASP VAL VAL VAL ILE VAL THR THR ASP ASP LYS GLU TRP SEQRES 8 A 162 ILE LYS ASP PHE ILE GLU GLU ALA LYS GLU ARG GLY VAL SEQRES 9 A 162 GLU VAL PHE VAL VAL TYR ASN ASN LYS ASP ASP ASP ARG SEQRES 10 A 162 ARG LYS GLU ALA GLN GLN GLU PHE ARG SER ASP GLY VAL SEQRES 11 A 162 ASP VAL ARG THR VAL SER ASP LYS GLU GLU LEU ILE GLU SEQRES 12 A 162 GLN VAL ARG ARG PHE VAL ARG LYS VAL GLY SER LEU GLU SEQRES 13 A 162 HIS HIS HIS HIS HIS HIS HELIX 1 1 ASP A 11 GLN A 25 1 15 HELIX 2 2 ASP A 37 LYS A 50 1 14 HELIX 3 3 ASP A 60 TYR A 75 1 16 HELIX 4 4 ASP A 88 ARG A 102 1 15 HELIX 5 5 ASP A 114 ARG A 126 1 13 HELIX 6 6 ASP A 137 GLY A 153 1 17 SHEET 1 A 6 ASP A 54 THR A 57 0 SHEET 2 A 6 ARG A 28 TYR A 33 1 N LEU A 31 O ARG A 56 SHEET 3 A 6 VAL A 80 THR A 85 1 O ILE A 83 N LEU A 32 SHEET 4 A 6 GLN A 3 SER A 9 1 N VAL A 7 O VAL A 82 SHEET 5 A 6 GLU A 105 ASN A 111 1 O VAL A 109 N VAL A 6 SHEET 6 A 6 ASP A 131 VAL A 135 1 O ARG A 133 N VAL A 108 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000