PDB Short entry for 2L8S HEADER CELL ADHESION 24-JAN-11 2L8S TITLE SOLUTION NMR STRUCTURE OF TRANSMEMBRANE AND CYTOSOLIC REGIONS OF TITLE 2 INTEGRIN ALPHA1 IN DETERGENT MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRIN ALPHA-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TRANSMEMBRANE/CYTOPLASMIC REGION, UNP RESIDUES 1135-1179; COMPND 5 SYNONYM: INTEGRIN ALPHA1, CD49 ANTIGEN-LIKE FAMILY MEMBER A, LAMININ COMPND 6 AND COLLAGEN RECEPTOR, VLA-1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET21B KEYWDS INTEGRIN ALPHA1, TRANSMEMBRANE REGION, DETERGENT MICELLE, CELL KEYWDS 2 ADHESION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR C.LAI,X.LIU,C.TIAN REVDAT 3 14-JUN-23 2L8S 1 SEQADV REVDAT 2 15-MAY-13 2L8S 1 JRNL REVDAT 1 01-FEB-12 2L8S 0 JRNL AUTH C.LAI,X.LIU,C.TIAN,F.WU JRNL TITL INTEGRIN ALPHA1 HAS A LONG HELIX, EXTENDING FROM THE JRNL TITL 2 TRANSMEMBRANE REGION TO THE CYTOPLASMIC TAIL IN DETERGENT JRNL TITL 3 MICELLES JRNL REF PLOS ONE V. 8 62954 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23646163 JRNL DOI 10.1371/JOURNAL.PONE.0062954 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRVIEW, XPLOR-NIH REMARK 3 AUTHORS : JOHNSON, ONE MOON SCIENTIFIC (NMRVIEW), REMARK 3 C.D.SCHWIETERS,J.J.KUSZEWSKI,N.TJANDRA,G.M.CLORE REMARK 3 (XPLOR-NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L8S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000102099. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50MM SODIUM PHOSPHATE; 2MM DTT; REMARK 210 1.0MM [U-15N] INTEGRIN ALPHA1; REMARK 210 95% H2O/5% D2O; 1.0MM [U-13C; U- REMARK 210 15N] INTEGRIN ALPHA1; 50MM REMARK 210 SODIUM PHOSPHATE; 2MM DTT; 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCA; 3D HNCACB; 3D CBCA(CO)NH; REMARK 210 3D C(CO)NH; 3D HBHA(CO)NH; 3D REMARK 210 H(CCO)NH; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, XPLOR-NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 LEU A 47 REMARK 465 GLU A 48 REMARK 465 HIS A 49 REMARK 465 HIS A 50 REMARK 465 HIS A 51 REMARK 465 HIS A 52 REMARK 465 HIS A 53 REMARK 465 HIS A 54 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 4 5.85 -65.99 REMARK 500 1 ARG A 6 161.88 -44.94 REMARK 500 1 LYS A 37 30.68 -87.41 REMARK 500 1 ARG A 38 76.23 -156.57 REMARK 500 1 LYS A 41 97.42 -7.11 REMARK 500 1 LYS A 42 167.64 -43.35 REMARK 500 1 MET A 44 -125.36 -128.40 REMARK 500 1 GLU A 45 9.82 58.71 REMARK 500 2 PRO A 4 -23.84 -38.38 REMARK 500 2 PHE A 35 49.19 37.84 REMARK 500 2 ARG A 38 76.19 59.19 REMARK 500 2 PRO A 39 -92.70 -78.91 REMARK 500 2 LEU A 40 87.59 4.66 REMARK 500 2 LYS A 42 96.44 46.96 REMARK 500 2 GLU A 45 -139.28 -77.65 REMARK 500 3 PRO A 4 -113.49 -65.55 REMARK 500 3 LYS A 37 41.71 -71.09 REMARK 500 3 ARG A 38 78.03 4.55 REMARK 500 3 LEU A 40 -124.05 -75.93 REMARK 500 3 LYS A 41 139.53 62.95 REMARK 500 3 LYS A 43 -159.30 42.98 REMARK 500 4 PRO A 4 37.00 -74.57 REMARK 500 4 LYS A 37 38.01 39.26 REMARK 500 4 PRO A 39 -159.75 -80.88 REMARK 500 4 LEU A 40 -31.03 -149.26 REMARK 500 4 LYS A 43 31.99 -68.11 REMARK 500 4 MET A 44 -159.08 37.31 REMARK 500 4 GLU A 45 -129.92 -61.39 REMARK 500 5 PRO A 4 40.45 -73.52 REMARK 500 5 PRO A 39 -146.79 -53.48 REMARK 500 5 LEU A 40 -167.17 -111.74 REMARK 500 5 LYS A 42 -35.76 -164.27 REMARK 500 5 LYS A 43 -114.08 42.49 REMARK 500 5 GLU A 45 -153.51 -60.74 REMARK 500 6 LYS A 37 49.03 17.04 REMARK 500 6 ARG A 38 91.69 -29.17 REMARK 500 6 PRO A 39 53.31 -94.29 REMARK 500 6 MET A 44 -170.27 67.72 REMARK 500 6 GLU A 45 -22.77 -37.41 REMARK 500 7 PRO A 4 -74.07 -76.25 REMARK 500 7 ARG A 6 161.27 -40.39 REMARK 500 7 ARG A 38 73.49 39.20 REMARK 500 7 PRO A 39 -153.03 -61.37 REMARK 500 7 LYS A 41 -31.15 -33.18 REMARK 500 7 LYS A 43 -153.94 32.38 REMARK 500 7 MET A 44 -97.12 -95.82 REMARK 500 7 GLU A 45 12.71 -162.58 REMARK 500 8 LYS A 37 42.59 -73.29 REMARK 500 8 ARG A 38 83.74 21.03 REMARK 500 8 PRO A 39 63.20 -59.23 REMARK 500 REMARK 500 THIS ENTRY HAS 65 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17424 RELATED DB: BMRB DBREF 2L8S A 2 46 UNP P56199 ITA1_HUMAN 1135 1179 SEQADV 2L8S MET A 1 UNP P56199 EXPRESSION TAG SEQADV 2L8S LEU A 47 UNP P56199 EXPRESSION TAG SEQADV 2L8S GLU A 48 UNP P56199 EXPRESSION TAG SEQADV 2L8S HIS A 49 UNP P56199 EXPRESSION TAG SEQADV 2L8S HIS A 50 UNP P56199 EXPRESSION TAG SEQADV 2L8S HIS A 51 UNP P56199 EXPRESSION TAG SEQADV 2L8S HIS A 52 UNP P56199 EXPRESSION TAG SEQADV 2L8S HIS A 53 UNP P56199 EXPRESSION TAG SEQADV 2L8S HIS A 54 UNP P56199 EXPRESSION TAG SEQRES 1 A 54 MET GLY LEU PRO GLY ARG VAL PRO LEU TRP VAL ILE LEU SEQRES 2 A 54 LEU SER ALA PHE ALA GLY LEU LEU LEU LEU MET LEU LEU SEQRES 3 A 54 ILE LEU ALA LEU TRP LYS ILE GLY PHE PHE LYS ARG PRO SEQRES 4 A 54 LEU LYS LYS LYS MET GLU LYS LEU GLU HIS HIS HIS HIS SEQRES 5 A 54 HIS HIS HELIX 1 1 LEU A 9 PHE A 36 1 28 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000