PDB Short entry for 2LA5 HEADER RNA BINDING PROTEIN/RNA 03-MAR-11 2LA5 TITLE RNA DUPLEX-QUADRUPLEX JUNCTION COMPLEX WITH FMRP RGG PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (36-MER); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FRAGILE X MENTAL RETARDATION 1 PROTEIN; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: RNA-BINDING RGG-BOX RESIDUES 527-541; COMPND 9 SYNONYM: FMRP, PROTEIN FMR-1; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 5 ORGANISM_COMMON: HUMAN; SOURCE 6 ORGANISM_TAXID: 9606; SOURCE 7 GENE: FMR1 KEYWDS RNA BINDING PROTEIN-RNA COMPLEX EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR A.PHAN,V.KURYAVYI,J.DARNELL,A.SERGANOV,A.MAJUMDAR,S.ILIN,R.DARNELL, AUTHOR 2 D.PATEL REVDAT 3 01-MAY-24 2LA5 1 REMARK SEQADV REVDAT 2 20-JUL-11 2LA5 1 JRNL REVDAT 1 08-JUN-11 2LA5 0 JRNL AUTH A.T.PHAN,V.KURYAVYI,J.C.DARNELL,A.SERGANOV,A.MAJUMDAR, JRNL AUTH 2 S.ILIN,T.RASLIN,A.POLONSKAIA,C.CHEN,D.CLAIN,R.B.DARNELL, JRNL AUTH 3 D.J.PATEL JRNL TITL STRUCTURE-FUNCTION STUDIES OF FMRP RGG PEPTIDE RECOGNITION JRNL TITL 2 OF AN RNA DUPLEX-QUADRUPLEX JUNCTION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 18 796 2011 JRNL REFN ISSN 1545-9993 JRNL PMID 21642970 JRNL DOI 10.1038/NSMB.2064 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH, X-PLOR NIH, AMBER REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X- REMARK 3 PLOR NIH), ACCELRYS SOFTWARE INC. (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LA5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAR-11. REMARK 100 THE DEPOSITION ID IS D_1000102148. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 0.050 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM RNA (36-MER), 1 MM PEPTIDE, REMARK 210 90% H2O/10% D2O AND 100%D2O; 0.5 REMARK 210 MM [U-100% 13C; U-100% 15N] RNA REMARK 210 (36-MER), 0.5 MM PEPTIDE, 90% REMARK 210 H2O/10% D2O AND 100%D2O; 0.5 MM REMARK 210 RNA (36-MER), 0.5 MM [U-100% 13C; REMARK 210 U-100% 15N] PEPTIDE, 90% H2O/10% REMARK 210 D2O AND 100%D2O; 0.2-0.5 MM [U- REMARK 210 100% 13C; U-100% 15N] RNA (36- REMARK 210 MER), 0.2-0.5 MM [U-100% 13C; U- REMARK 210 100% 15N] PEPTIDE, 90% H2O/10% REMARK 210 D2O AND 100%D2O; 0.5 MM [U-13C; REMARK 210 U-15N]-GUA RNA (36-MER), 0.5 MM REMARK 210 PEPTIDE, 90% H2O/10% D2O AND 100% REMARK 210 D2O; 0.2 MM [U-13C; U-15N]-ADE REMARK 210 RNA (36-MER), 0.2 MM PEPTIDE, 90% REMARK 210 H2O/10% D2O AND 100%D2O; 0.2 MM REMARK 210 [U-13C; U-15N]-CYT RNA (36-MER), REMARK 210 0.2 MM PEPTIDE, 90% H2O/10% D2O REMARK 210 AND 100%D2O; 0.2 MM [U-13C; U- REMARK 210 15N]-URA RNA (36-MER), 0.2 MM REMARK 210 PEPTIDE, 90% H2O/10% D2O AND 100% REMARK 210 D2O; 0.2 MM RG-TO-DG AND RU-TO- REMARK 210 DU 2% 15N-LABELLED RNA (36-MER), REMARK 210 0.2 MM PEPTIDE, 90% H2O/10% D2O REMARK 210 AND 100%D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : JR; 2D 1H-1H NOESY; 2D 1H-1H REMARK 210 COSY; 2D 1H-1H TOCSY; 2D 1H-13C REMARK 210 HSQC; 2D 1H-15N HSQC; 2D 13C-1H REMARK 210 CTHSQC; HNH-COSY; HNN-COSY; HCCH- REMARK 210 COSY; HCCH-TOCSY; 13C-EDITED REMARK 210 NOESY; 15N-EDITED NOESY; 15N-1H REMARK 210 HSQC; 13C-1H HSQC; HNCA; HNCO; REMARK 210 HNCOCA; HNCACB; HBHACONH; 1D 15N- REMARK 210 FILTERED; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : UNITY; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AMBER, FELIX, VNMR, TOPSPIN, REMARK 210 CARA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17504 RELATED DB: BMRB DBREF 2LA5 A 1 17 PDB 2LA5 2LA5 1 17 DBREF 2LA5 B 3 17 UNP Q06787 FMR1_HUMAN 527 541 SEQADV 2LA5 GLY B 1 UNP Q06787 EXPRESSION TAG SEQADV 2LA5 PRO B 2 UNP Q06787 EXPRESSION TAG SEQRES 1 A 36 G C U G C G G U G U G G A SEQRES 2 A 36 A G G A G U G G C U G G G SEQRES 3 A 36 U U G C G C A G C G SEQRES 1 B 17 GLY PRO ARG ARG GLY ASP GLY ARG ARG ARG GLY GLY GLY SEQRES 2 B 17 GLY ARG GLY GLN CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000