PDB Short entry for 2LAN HEADER METAL BINDING PROTEIN 16-MAR-11 2LAN TITLE NMR STRUCTURE OF CA2+-BOUND CABP1 N-DOMAIN WITH RDC COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALCIUM-BINDING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EF-HANDS 1-4; COMPND 5 SYNONYM: CABP1, CALBRAIN, CALDENDRIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CABP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET3B KEYWDS EF-HAND, CA2+-BOUND CLOSED FORM, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR J.AMES REVDAT 1 08-FEB-12 2LAN 0 JRNL AUTH J.AMES JRNL TITL 1H, 15N, AND 13C CHEMICAL SHIFT ASSIGNMENTS FOR CABP1 WITH 3 JRNL TITL 2 CA2+ BOUND JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH 2.23 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LAN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-APR-11. REMARK 100 THE RCSB ID CODE IS RCSB102164. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 0.01 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-98% 13C; U-98% 15N] REMARK 210 CABP1, 5.0 MM CALCIUM, 10.0 MM REMARK 210 TRIS, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCO; 3D HNCACB; 3D HBHA(CO) REMARK 210 NH; 3D HCCH-TOCSY; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPARKY, X-PLOR_NIH 2.23 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 150 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-15 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ASN A 3 REMARK 465 CYS A 4 REMARK 465 VAL A 5 REMARK 465 LYS A 6 REMARK 465 TYR A 7 REMARK 465 PRO A 8 REMARK 465 LEU A 9 REMARK 465 ARG A 10 REMARK 465 ASN A 11 REMARK 465 LEU A 12 REMARK 465 SER A 13 REMARK 465 ARG A 14 REMARK 465 LYS A 15 REMARK 465 ASP A 16 REMARK 465 ARG A 17 REMARK 465 LEU A 92 REMARK 465 ALA A 93 REMARK 465 GLU A 94 REMARK 465 THR A 95 REMARK 465 ALA A 96 REMARK 465 ASP A 97 REMARK 465 MET A 98 REMARK 465 ILE A 99 REMARK 465 GLY A 100 REMARK 465 VAL A 101 REMARK 465 LYS A 102 REMARK 465 GLU A 103 REMARK 465 LEU A 104 REMARK 465 ARG A 105 REMARK 465 ASP A 106 REMARK 465 ALA A 107 REMARK 465 PHE A 108 REMARK 465 ARG A 109 REMARK 465 GLU A 110 REMARK 465 PHE A 111 REMARK 465 ASP A 112 REMARK 465 THR A 113 REMARK 465 ASN A 114 REMARK 465 GLY A 115 REMARK 465 ASP A 116 REMARK 465 GLY A 117 REMARK 465 GLU A 118 REMARK 465 ILE A 119 REMARK 465 SER A 120 REMARK 465 THR A 121 REMARK 465 SER A 122 REMARK 465 GLU A 123 REMARK 465 LEU A 124 REMARK 465 ARG A 125 REMARK 465 GLU A 126 REMARK 465 ALA A 127 REMARK 465 MET A 128 REMARK 465 ARG A 129 REMARK 465 LYS A 130 REMARK 465 LEU A 131 REMARK 465 LEU A 132 REMARK 465 GLY A 133 REMARK 465 HIS A 134 REMARK 465 GLN A 135 REMARK 465 VAL A 136 REMARK 465 GLY A 137 REMARK 465 HIS A 138 REMARK 465 ARG A 139 REMARK 465 ASP A 140 REMARK 465 ILE A 141 REMARK 465 GLU A 142 REMARK 465 GLU A 143 REMARK 465 ILE A 144 REMARK 465 ILE A 145 REMARK 465 ARG A 146 REMARK 465 ASP A 147 REMARK 465 VAL A 148 REMARK 465 ASP A 149 REMARK 465 LEU A 150 REMARK 465 ASN A 151 REMARK 465 GLY A 152 REMARK 465 ASP A 153 REMARK 465 GLY A 154 REMARK 465 ARG A 155 REMARK 465 VAL A 156 REMARK 465 ASP A 157 REMARK 465 PHE A 158 REMARK 465 GLU A 159 REMARK 465 GLU A 160 REMARK 465 PHE A 161 REMARK 465 VAL A 162 REMARK 465 ARG A 163 REMARK 465 MET A 164 REMARK 465 MET A 165 REMARK 465 SER A 166 REMARK 465 ARG A 167 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H TYR A 41 CA CA A 301 1.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 20 -64.01 -156.71 REMARK 500 1 CYS A 44 29.37 -70.90 REMARK 500 1 MET A 54 -3.67 -160.32 REMARK 500 1 MET A 57 74.34 60.43 REMARK 500 1 THR A 59 -158.60 -59.27 REMARK 500 1 ILE A 64 -63.03 -90.75 REMARK 500 1 ASN A 73 -71.69 -46.93 REMARK 500 1 LYS A 90 -64.37 -149.95 REMARK 500 2 LEU A 19 -73.69 58.79 REMARK 500 2 ASP A 39 0.90 54.22 REMARK 500 2 CYS A 44 21.75 -65.07 REMARK 500 2 ARG A 45 -70.16 -87.46 REMARK 500 2 MET A 54 48.05 -176.84 REMARK 500 2 THR A 59 -150.50 -71.67 REMARK 500 2 MET A 72 -69.31 -92.47 REMARK 500 2 ASN A 73 -84.64 -37.33 REMARK 500 2 PRO A 89 80.39 -50.79 REMARK 500 3 LYS A 36 -0.56 -143.03 REMARK 500 3 ASP A 39 -4.33 56.21 REMARK 500 3 MET A 54 54.57 -165.18 REMARK 500 3 THR A 59 170.67 -49.16 REMARK 500 3 LEU A 66 -70.06 -64.11 REMARK 500 3 ASN A 73 -76.78 -71.37 REMARK 500 3 PRO A 89 12.98 -64.43 REMARK 500 4 ARG A 20 74.96 -153.98 REMARK 500 4 LYS A 36 64.85 -69.84 REMARK 500 4 ASP A 37 -26.23 168.97 REMARK 500 4 CYS A 44 23.53 -68.98 REMARK 500 4 TYR A 56 43.09 -78.74 REMARK 500 4 LEU A 74 -108.37 -80.33 REMARK 500 5 ARG A 20 -63.76 168.00 REMARK 500 5 ASP A 37 -20.30 167.87 REMARK 500 5 CYS A 44 31.39 -73.34 REMARK 500 5 TYR A 56 2.74 -63.29 REMARK 500 5 ILE A 64 -60.33 -99.49 REMARK 500 5 PHE A 80 -27.87 -39.55 REMARK 500 6 LEU A 19 76.46 40.49 REMARK 500 6 LYS A 38 62.17 62.67 REMARK 500 6 CYS A 44 35.38 -66.37 REMARK 500 6 ARG A 45 -72.09 -90.87 REMARK 500 6 TYR A 56 87.46 38.70 REMARK 500 6 ILE A 64 -71.99 -96.36 REMARK 500 6 MET A 72 -75.99 -89.79 REMARK 500 6 ASN A 73 -88.28 -39.71 REMARK 500 6 LEU A 74 -81.26 -38.07 REMARK 500 6 LYS A 90 -65.51 -163.51 REMARK 500 7 LEU A 19 93.78 54.26 REMARK 500 7 ARG A 20 150.25 -41.87 REMARK 500 7 ASP A 37 -34.57 164.14 REMARK 500 7 CYS A 44 39.04 -71.01 REMARK 500 REMARK 500 THIS ENTRY HAS 109 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 35 OD1 REMARK 620 2 ASP A 39 OD2 105.6 REMARK 620 3 TYR A 41 O 112.6 81.4 REMARK 620 4 ASP A 37 OD2 70.6 48.2 67.0 REMARK 620 5 ASP A 35 OD2 53.4 150.9 123.3 123.0 REMARK 620 6 ASP A 39 OD1 117.9 20.8 92.0 68.9 144.7 REMARK 620 7 ASP A 37 OD1 55.9 49.8 102.1 35.3 105.5 63.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16862 RELATED DB: BMRB DBREF 2LAN A 16 167 UNP Q9NZU7 CABP1_HUMAN 219 370 SEQADV 2LAN MET A 1 UNP Q9NZU7 EXPRESSION TAG SEQADV 2LAN GLY A 2 UNP Q9NZU7 EXPRESSION TAG SEQADV 2LAN ASN A 3 UNP Q9NZU7 EXPRESSION TAG SEQADV 2LAN CYS A 4 UNP Q9NZU7 EXPRESSION TAG SEQADV 2LAN VAL A 5 UNP Q9NZU7 EXPRESSION TAG SEQADV 2LAN LYS A 6 UNP Q9NZU7 EXPRESSION TAG SEQADV 2LAN TYR A 7 UNP Q9NZU7 EXPRESSION TAG SEQADV 2LAN PRO A 8 UNP Q9NZU7 EXPRESSION TAG SEQADV 2LAN LEU A 9 UNP Q9NZU7 EXPRESSION TAG SEQADV 2LAN ARG A 10 UNP Q9NZU7 EXPRESSION TAG SEQADV 2LAN ASN A 11 UNP Q9NZU7 EXPRESSION TAG SEQADV 2LAN LEU A 12 UNP Q9NZU7 EXPRESSION TAG SEQADV 2LAN SER A 13 UNP Q9NZU7 EXPRESSION TAG SEQADV 2LAN ARG A 14 UNP Q9NZU7 EXPRESSION TAG SEQADV 2LAN LYS A 15 UNP Q9NZU7 EXPRESSION TAG SEQRES 1 A 167 MET GLY ASN CYS VAL LYS TYR PRO LEU ARG ASN LEU SER SEQRES 2 A 167 ARG LYS ASP ARG SER LEU ARG PRO GLU GLU ILE GLU GLU SEQRES 3 A 167 LEU ARG GLU ALA PHE ARG GLU PHE ASP LYS ASP LYS ASP SEQRES 4 A 167 GLY TYR ILE ASN CYS ARG ASP LEU GLY ASN CYS MET ARG SEQRES 5 A 167 THR MET GLY TYR MET PRO THR GLU MET GLU LEU ILE GLU SEQRES 6 A 167 LEU SER GLN GLN ILE ASN MET ASN LEU GLY GLY HIS VAL SEQRES 7 A 167 ASP PHE ASP ASP PHE VAL GLU LEU MET GLY PRO LYS LEU SEQRES 8 A 167 LEU ALA GLU THR ALA ASP MET ILE GLY VAL LYS GLU LEU SEQRES 9 A 167 ARG ASP ALA PHE ARG GLU PHE ASP THR ASN GLY ASP GLY SEQRES 10 A 167 GLU ILE SER THR SER GLU LEU ARG GLU ALA MET ARG LYS SEQRES 11 A 167 LEU LEU GLY HIS GLN VAL GLY HIS ARG ASP ILE GLU GLU SEQRES 12 A 167 ILE ILE ARG ASP VAL ASP LEU ASN GLY ASP GLY ARG VAL SEQRES 13 A 167 ASP PHE GLU GLU PHE VAL ARG MET MET SER ARG HET CA A 301 1 HETNAM CA CALCIUM ION FORMUL 2 CA CA 2+ HELIX 1 1 ARG A 20 ASP A 35 1 16 HELIX 2 2 ASP A 46 ARG A 52 1 7 HELIX 3 3 THR A 59 ASN A 73 1 15 HELIX 4 4 ASP A 79 GLY A 88 1 10 LINK OD1 ASP A 35 CA CA A 301 1555 1555 2.64 LINK OD2 ASP A 39 CA CA A 301 1555 1555 4.00 LINK O TYR A 41 CA CA A 301 1555 1555 2.17 LINK OD2 ASP A 37 CA CA A 301 1555 1555 3.59 LINK OD2 ASP A 35 CA CA A 301 1555 1555 1.98 LINK OD1 ASP A 39 CA CA A 301 1555 1555 2.11 LINK OD1 ASP A 37 CA CA A 301 1555 1555 2.34 SITE 1 AC1 5 ASP A 35 ASP A 37 ASP A 39 GLY A 40 SITE 2 AC1 5 TYR A 41 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000