PDB Short entry for 2LB1 HEADER SIGNALING PROTEIN/TRANSCRIPTION 22-MAR-11 2LB1 TITLE STRUCTURE OF THE SECOND DOMAIN OF HUMAN SMURF1 IN COMPLEX WITH A HUMAN TITLE 2 SMAD1 DERIVED PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE SMURF1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 305-339; COMPND 5 SYNONYM: HSMURF1, SMAD UBIQUITINATION REGULATORY FACTOR 1, SMAD- COMPND 6 SPECIFIC E3 UBIQUITIN-PROTEIN LIGASE 1; COMPND 7 EC: 6.3.2.-; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: MOTHERS AGAINST DECAPENTAPLEGIC HOMOLOG 1; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: RESIDUES 221-233; COMPND 13 SYNONYM: MAD HOMOLOG 1, MOTHERS AGAINST DPP HOMOLOG 1, JV4-1, MAD- COMPND 14 RELATED PROTEIN 1, SMAD FAMILY MEMBER 1, SMAD 1, SMAD1, HSMAD1, COMPND 15 TRANSFORMING GROWTH FACTOR-BETA-SIGNALING PROTEIN 1, BSP-1; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SMURF1, KIAA1625; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PETM11; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS SMURF, SMAD, CDK, SIGNAL TRANSDUCTION, SIGNALING PROTEIN- KEYWDS 2 TRANSCRIPTION COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.J.MACIAS,E.ARAGON,N.GOERNER,A.ZAROMYTIDOU,Q.XI,A.ESCOBEDO, AUTHOR 2 J.MASSAGUE REVDAT 2 27-APR-16 2LB1 1 ATOM DBREF REMARK SEQADV REVDAT 2 2 1 VERSN REVDAT 1 06-JUL-11 2LB1 0 JRNL AUTH E.ARAGON,N.GOERNER,A.I.ZAROMYTIDOU,Q.XI,A.ESCOBEDO, JRNL AUTH 2 J.MASSAGUE,M.J.MACIAS JRNL TITL A SMAD ACTION TURNOVER SWITCH OPERATED BY WW DOMAIN READERS JRNL TITL 2 OF A PHOSPHOSERINE CODE. JRNL REF GENES DEV. V. 25 1275 2011 JRNL REFN ISSN 0890-9369 JRNL PMID 21685363 JRNL DOI 10.1101/GAD.2060811 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE, REMARK 3 JIANG,KUSZEWSKI,NILGES,PANNU,READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LB1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-APR-11. REMARK 100 THE RCSB ID CODE IS RCSB102177. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 285 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 0.420 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM NEDD4LWW3, 3 MM SMAD3, 20 REMARK 210 MM SODIUM PHOSPHATE, 100 MM REMARK 210 SODIUM CHLORIDE, 2 MM SODIUM REMARK 210 AZIDE, 90% H2O/10% D2O; 1 MM [U- REMARK 210 100% 15N] NEDD4LWW3, 3 MM SMAD3, REMARK 210 20 MM SODIUM PHOSPHATE, 100 MM REMARK 210 SODIUM CHLORIDE, 2 MM SODIUM REMARK 210 AZIDE, 90% H2O/10% D2O; 1 MM [U- REMARK 210 100% 13C; U-100% 15N] NEDD4LWW3, REMARK 210 3 MM SMAD3, 20 MM SODIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 2 MM SODIUM AZIDE, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H TOCSY; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 2D 1H- REMARK 210 15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.3, XEASY, TOPSPIN, NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 300 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 314 REMARK 465 ALA B 220 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 304 75.24 65.76 REMARK 500 1 PRO B 225 -179.82 -57.68 REMARK 500 2 ARG A 304 69.66 62.15 REMARK 500 3 ARG A 304 75.25 61.28 REMARK 500 4 ARG A 304 82.04 65.41 REMARK 500 5 ARG A 304 81.25 68.54 REMARK 500 6 ARG A 304 89.44 67.12 REMARK 500 6 PRO B 223 153.55 -48.50 REMARK 500 6 PRO B 225 176.51 -56.48 REMARK 500 8 ARG A 304 79.02 59.01 REMARK 500 9 ARG A 304 83.09 67.59 REMARK 500 10 ARG A 304 77.04 61.28 REMARK 500 10 PRO B 225 -179.68 -64.80 REMARK 500 11 ARG A 304 81.17 67.06 REMARK 500 11 PRO B 225 171.76 -56.10 REMARK 500 12 ARG A 304 53.34 71.03 REMARK 500 12 PRO B 225 -179.96 -63.36 REMARK 500 13 ARG A 304 78.17 64.83 REMARK 500 14 ASN A 302 -64.82 -91.51 REMARK 500 14 ARG A 304 84.00 66.99 REMARK 500 14 PRO B 225 179.99 -58.58 REMARK 500 15 ARG A 304 82.90 64.72 REMARK 500 16 ARG A 304 35.83 73.76 REMARK 500 17 ARG A 304 83.46 69.46 REMARK 500 18 ARG A 304 81.92 57.31 REMARK 500 18 PRO B 225 173.22 -55.74 REMARK 500 19 ARG A 304 83.74 66.38 REMARK 500 20 PRO B 225 -179.99 -61.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO B 229 PRO B 230 1 -145.69 REMARK 500 PRO B 229 PRO B 230 2 -137.02 REMARK 500 PRO B 229 PRO B 230 3 -147.71 REMARK 500 PRO B 229 PRO B 230 4 -146.32 REMARK 500 PRO B 229 PRO B 230 5 -143.44 REMARK 500 PRO B 229 PRO B 230 6 -145.73 REMARK 500 PRO B 229 PRO B 230 7 -147.12 REMARK 500 PRO B 229 PRO B 230 8 -143.88 REMARK 500 PRO B 229 PRO B 230 9 -149.62 REMARK 500 PRO B 229 PRO B 230 11 -143.89 REMARK 500 PRO B 229 PRO B 230 12 -145.99 REMARK 500 PRO B 229 PRO B 230 13 -146.52 REMARK 500 PRO B 229 PRO B 230 14 -146.80 REMARK 500 PRO B 229 PRO B 230 15 -146.60 REMARK 500 PRO B 229 PRO B 230 16 -146.52 REMARK 500 PRO B 229 PRO B 230 17 -145.93 REMARK 500 PRO B 229 PRO B 230 18 -149.10 REMARK 500 PRO B 229 PRO B 230 19 -147.62 REMARK 500 PRO B 229 PRO B 230 20 -147.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 3 ARG A 289 0.09 SIDE CHAIN REMARK 500 5 ARG A 289 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17543 RELATED DB: BMRB REMARK 900 RELATED ID: 2LAW RELATED DB: PDB REMARK 900 RELATED ID: 2LAX RELATED DB: PDB REMARK 900 RELATED ID: 2LAY RELATED DB: PDB REMARK 900 RELATED ID: 2LAZ RELATED DB: PDB REMARK 900 RELATED ID: 2LB0 RELATED DB: PDB REMARK 900 RELATED ID: 2LB2 RELATED DB: PDB REMARK 900 RELATED ID: 2LB3 RELATED DB: PDB DBREF 2LB1 A 279 314 UNP Q9HCE7 SMUF1_HUMAN 305 340 DBREF 2LB1 B 220 233 UNP Q15797 SMAD1_HUMAN 220 233 SEQADV 2LB1 NH2 B 234 UNP Q15797 INSERTION SEQRES 1 A 36 LEU GLY PRO LEU PRO PRO GLY TRP GLU VAL ARG SER THR SEQRES 2 A 36 VAL SER GLY ARG ILE TYR PHE VAL ASP HIS ASN ASN ARG SEQRES 3 A 36 THR THR GLN PHE THR ASP PRO ARG LEU HIS SEQRES 1 B 15 ALA ASP THR PRO PRO PRO ALA TYR LEU PRO PRO GLU ASP SEQRES 2 B 15 PRO NH2 HET NH2 B 234 3 HETNAM NH2 AMINO GROUP FORMUL 2 NH2 H2 N SHEET 1 A 3 TRP A 286 THR A 291 0 SHEET 2 A 3 ARG A 295 ASP A 300 -1 O VAL A 299 N GLU A 287 SHEET 3 A 3 THR A 305 GLN A 307 -1 O GLN A 307 N PHE A 298 LINK C PRO B 233 N NH2 B 234 1555 1555 1.32 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000