PDB Short entry for 2LBP HEADER PERIPLASMIC BINDING PROTEIN 10-APR-89 2LBP TITLE STRUCTURE OF THE L-LEUCINE-BINDING PROTEIN REFINED AT 2.4 TITLE 2 ANGSTROMS RESOLUTION AND COMPARISON WITH THE LEU(SLASH) TITLE 3 ILE(SLASH)VAL-BINDING PROTEIN STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUCINE-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM_STRAIN: K12 KEYWDS PERIPLASMIC BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.S.SACK,S.D.TRAKHANOV,I.H.TSIGANNIK,F.A.QUIOCHO REVDAT 3 24-FEB-09 2LBP 1 VERSN REVDAT 2 01-APR-03 2LBP 1 JRNL REVDAT 1 12-JUL-89 2LBP 0 JRNL AUTH J.S.SACK,S.D.TRAKHANOV,I.H.TSIGANNIK,F.A.QUIOCHO JRNL TITL STRUCTURE OF THE L-LEUCINE-BINDING PROTEIN REFINED JRNL TITL 2 AT 2.4 A RESOLUTION AND COMPARISON WITH THE JRNL TITL 3 LEU/ILE/VAL-BINDING PROTEIN STRUCTURE. JRNL REF J.MOL.BIOL. V. 206 193 1989 JRNL REFN ISSN 0022-2836 JRNL PMID 2649683 JRNL DOI 10.1016/0022-2836(89)90532-9 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.S.SACK,M.A.SAPER,F.A.QUIOCHO REMARK 1 TITL PERIPLASMIC BINDING PROTEIN STRUCTURE AND REMARK 1 TITL 2 FUNCTION. REFINED X-RAY STRUCTURES OF THE REMARK 1 TITL 3 LEUCINE(SLASH)ISOLEUCINE(SLASH)VALINE-BINDING REMARK 1 TITL 4 PROTEIN AND ITS COMPLEX WITH LEUCINE REMARK 1 REF J.MOL.BIOL. V. 206 171 1989 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 13797 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2600 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 91 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.019 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.045 ; 0.030 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.067 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.014 ; 0.020 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.235 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.230 ; 0.500 REMARK 3 MULTIPLE TORSION (A) : 0.326 ; 0.500 REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : 0.289 ; 0.500 REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 9.200 ; 3.000 REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.662 ; 1.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.152 ; 1.500 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.203 ; 1.500 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 1.896 ; 2.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LBP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.40000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.14000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.67000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.14000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.40000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.67000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 32 OH TYR A 281 1.82 REMARK 500 OE2 GLU A 27 OE2 GLU A 48 2.00 REMARK 500 O SER A 286 O ALA A 290 2.08 REMARK 500 O THR A 289 N LEU A 291 2.09 REMARK 500 O ALA A 103 NH2 ARG A 116 2.17 REMARK 500 O HOH A 547 O HOH A 549 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 13 N GLY A 13 CA 0.112 REMARK 500 GLU A 22 CB GLU A 22 CG -0.144 REMARK 500 GLU A 27 CG GLU A 27 CD -0.107 REMARK 500 GLU A 90 CD GLU A 90 OE1 -0.066 REMARK 500 GLU A 292 CD GLU A 292 OE1 -0.068 REMARK 500 GLY A 310 N GLY A 310 CA 0.098 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 2 CB - CG - OD2 ANGL. DEV. = -6.9 DEGREES REMARK 500 VAL A 5 CB - CA - C ANGL. DEV. = -16.9 DEGREES REMARK 500 VAL A 5 C - N - CA ANGL. DEV. = 17.4 DEGREES REMARK 500 MET A 11 CA - CB - CG ANGL. DEV. = 11.2 DEGREES REMARK 500 SER A 12 CA - C - N ANGL. DEV. = 17.2 DEGREES REMARK 500 SER A 12 O - C - N ANGL. DEV. = -10.3 DEGREES REMARK 500 GLU A 22 CA - CB - CG ANGL. DEV. = 36.6 DEGREES REMARK 500 GLU A 22 CB - CG - CD ANGL. DEV. = 46.3 DEGREES REMARK 500 ASN A 24 N - CA - CB ANGL. DEV. = -15.0 DEGREES REMARK 500 GLU A 27 CB - CG - CD ANGL. DEV. = 40.7 DEGREES REMARK 500 GLU A 27 OE1 - CD - OE2 ANGL. DEV. = -10.7 DEGREES REMARK 500 GLU A 27 CG - CD - OE1 ANGL. DEV. = 20.6 DEGREES REMARK 500 ASN A 34 CB - CA - C ANGL. DEV. = 25.7 DEGREES REMARK 500 ASN A 34 CA - CB - CG ANGL. DEV. = 16.8 DEGREES REMARK 500 VAL A 47 CB - CA - C ANGL. DEV. = 23.2 DEGREES REMARK 500 VAL A 47 CA - CB - CG1 ANGL. DEV. = 9.7 DEGREES REMARK 500 GLU A 48 CG - CD - OE1 ANGL. DEV. = 14.7 DEGREES REMARK 500 ASP A 50 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP A 51 CB - CG - OD1 ANGL. DEV. = 8.4 DEGREES REMARK 500 ASP A 51 CB - CG - OD2 ANGL. DEV. = -12.0 DEGREES REMARK 500 HIS A 76 C - N - CA ANGL. DEV. = 29.1 DEGREES REMARK 500 GLU A 90 CG - CD - OE2 ANGL. DEV. = -12.8 DEGREES REMARK 500 ASP A 91 N - CA - CB ANGL. DEV. = -11.9 DEGREES REMARK 500 ASP A 91 C - N - CA ANGL. DEV. = 18.1 DEGREES REMARK 500 GLN A 108 CA - CB - CG ANGL. DEV. = 17.3 DEGREES REMARK 500 ARG A 109 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 116 CA - CB - CG ANGL. DEV. = 13.2 DEGREES REMARK 500 ARG A 116 CD - NE - CZ ANGL. DEV. = 18.1 DEGREES REMARK 500 ARG A 116 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 146 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG A 156 NE - CZ - NH1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG A 156 NE - CZ - NH2 ANGL. DEV. = -6.7 DEGREES REMARK 500 LYS A 163 N - CA - CB ANGL. DEV. = 10.9 DEGREES REMARK 500 ASP A 173 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 173 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 THR A 176 CA - CB - CG2 ANGL. DEV. = 8.4 DEGREES REMARK 500 ALA A 177 CB - CA - C ANGL. DEV. = 9.4 DEGREES REMARK 500 ARG A 188 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 188 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 211 CD - NE - CZ ANGL. DEV. = -9.7 DEGREES REMARK 500 ARG A 211 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 214 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 MET A 223 N - CA - CB ANGL. DEV. = 14.9 DEGREES REMARK 500 GLU A 226 CA - CB - CG ANGL. DEV. = 16.6 DEGREES REMARK 500 ASN A 235 CA - CB - CG ANGL. DEV. = 19.6 DEGREES REMARK 500 ASP A 239 CB - CG - OD2 ANGL. DEV. = -8.7 DEGREES REMARK 500 VAL A 246 CB - CA - C ANGL. DEV. = -12.7 DEGREES REMARK 500 VAL A 246 CA - CB - CG2 ANGL. DEV. = 11.6 DEGREES REMARK 500 TYR A 252 CB - CG - CD2 ANGL. DEV. = -4.4 DEGREES REMARK 500 LEU A 287 CA - C - O ANGL. DEV. = 14.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 66 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 12 -32.02 -146.04 REMARK 500 ALA A 52 3.18 55.20 REMARK 500 VAL A 66 -72.38 -61.74 REMARK 500 ASN A 67 26.76 -64.73 REMARK 500 HIS A 76 133.81 -16.47 REMARK 500 TYR A 150 -82.90 -50.17 REMARK 500 ALA A 164 94.70 -63.20 REMARK 500 ALA A 165 6.48 138.63 REMARK 500 GLN A 285 2.99 -69.78 REMARK 500 THR A 289 -111.35 107.40 REMARK 500 LEU A 291 -55.90 86.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 75 HIS A 76 -86.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 140 0.10 SIDE_CHAIN REMARK 500 ARG A 214 0.09 SIDE_CHAIN REMARK 500 ARG A 293 0.12 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 75 -14.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 501 DISTANCE = 5.62 ANGSTROMS REMARK 525 HOH A 509 DISTANCE = 5.64 ANGSTROMS REMARK 525 HOH A 514 DISTANCE = 5.05 ANGSTROMS REMARK 525 HOH A 517 DISTANCE = 5.00 ANGSTROMS REMARK 525 HOH A 522 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH A 523 DISTANCE = 5.17 ANGSTROMS REMARK 525 HOH A 527 DISTANCE = 5.41 ANGSTROMS REMARK 525 HOH A 537 DISTANCE = 8.16 ANGSTROMS REMARK 525 HOH A 540 DISTANCE = 5.77 ANGSTROMS REMARK 525 HOH A 541 DISTANCE = 7.88 ANGSTROMS REMARK 525 HOH A 555 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A 568 DISTANCE = 9.55 ANGSTROMS REMARK 525 HOH A 572 DISTANCE = 6.72 ANGSTROMS REMARK 525 HOH A 573 DISTANCE = 5.07 ANGSTROMS REMARK 525 HOH A 576 DISTANCE = 5.11 ANGSTROMS REMARK 525 HOH A 578 DISTANCE = 5.17 ANGSTROMS REMARK 525 HOH A 579 DISTANCE = 5.07 ANGSTROMS REMARK 525 HOH A 581 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH A 582 DISTANCE = 5.68 ANGSTROMS REMARK 525 HOH A 583 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A 585 DISTANCE = 7.37 ANGSTROMS REMARK 525 HOH A 586 DISTANCE = 6.20 ANGSTROMS DBREF 2LBP A 1 346 UNP P04816 LIVK_ECOLI 24 369 SEQADV 2LBP LYS A 344 UNP P04816 ALA 367 CONFLICT SEQRES 1 A 346 ASP ASP ILE LYS VAL ALA VAL VAL GLY ALA MET SER GLY SEQRES 2 A 346 PRO ILE ALA GLN TRP GLY ILE MET GLU PHE ASN GLY ALA SEQRES 3 A 346 GLU GLN ALA ILE LYS ASP ILE ASN ALA LYS GLY GLY ILE SEQRES 4 A 346 LYS GLY ASP LYS LEU VAL GLY VAL GLU TYR ASP ASP ALA SEQRES 5 A 346 CYS ASP PRO LYS GLN ALA VAL ALA VAL ALA ASN LYS ILE SEQRES 6 A 346 VAL ASN ASP GLY ILE LYS TYR VAL ILE GLY HIS LEU CYS SEQRES 7 A 346 SER SER SER THR GLN PRO ALA SER ASP ILE TYR GLU ASP SEQRES 8 A 346 GLU GLY ILE LEU MET ILE SER PRO GLY ALA THR ALA PRO SEQRES 9 A 346 GLU LEU THR GLN ARG GLY TYR GLN HIS ILE MET ARG THR SEQRES 10 A 346 ALA GLY LEU ASP SER SER GLN GLY PRO THR ALA ALA LYS SEQRES 11 A 346 TYR ILE LEU GLU THR VAL LYS PRO GLN ARG ILE ALA ILE SEQRES 12 A 346 ILE HIS ASP LYS GLN GLN TYR GLY GLU GLY LEU ALA ARG SEQRES 13 A 346 SER VAL GLN ASP GLY LEU LYS ALA ALA ASN ALA ASN VAL SEQRES 14 A 346 VAL PHE PHE ASP GLY ILE THR ALA GLY GLU LYS ASP PHE SEQRES 15 A 346 SER ALA LEU ILE ALA ARG LEU LYS LYS GLU ASN ILE ASP SEQRES 16 A 346 PHE VAL TYR TYR GLY GLY TYR TYR PRO GLU MET GLY GLN SEQRES 17 A 346 MET LEU ARG GLN ALA ARG SER VAL GLY LEU LYS THR GLN SEQRES 18 A 346 PHE MET GLY PRO GLU GLY VAL GLY ASN ALA SER LEU SER SEQRES 19 A 346 ASN ILE ALA GLY ASP ALA ALA GLU GLY MET LEU VAL THR SEQRES 20 A 346 MET PRO LYS ARG TYR ASP GLN ASP PRO ALA ASN GLN GLY SEQRES 21 A 346 ILE VAL ASP ALA LEU LYS ALA ASP LYS LYS ASP PRO SER SEQRES 22 A 346 GLY PRO TYR VAL TRP ILE THR TYR ALA ALA VAL GLN SER SEQRES 23 A 346 LEU ALA THR ALA LEU GLU ARG THR GLY SER ASP GLU PRO SEQRES 24 A 346 LEU ALA LEU VAL LYS ASP LEU LYS ALA ASN GLY ALA ASN SEQRES 25 A 346 THR VAL ILE GLY PRO LEU ASN TRP ASP GLU LYS GLY ASP SEQRES 26 A 346 LEU LYS GLY PHE ASP PHE GLY VAL PHE GLN TRP HIS ALA SEQRES 27 A 346 ASP GLY SER SER THR LYS ALA LYS FORMUL 2 HOH *91(H2 O) HELIX 1 A TRP A 18 GLY A 37 1 20 HELIX 2 B ASP A 54 GLY A 69 1 16 HELIX 3 C ALA A 85 GLY A 93 1 9 HELIX 4 D GLN A 124 THR A 135 1 12 HELIX 5 E GLN A 148 ALA A 164 1 17 HELIX 6 F PHE A 182 LYS A 191 1 10 HELIX 7 G TYR A 202 VAL A 216 1 15 HELIX 8 H ASN A 258 ALA A 267 1 10 HELIX 9 I PRO A 275 ARG A 293 1 19 HELIX 10 J GLU A 298 ASN A 309 1 12 SHEET 1 I 7 LYS A 43 ASP A 51 0 SHEET 2 I 7 ILE A 3 GLY A 9 1 N ILE A 3 O LYS A 43 SHEET 3 I 7 LYS A 71 GLY A 75 1 O TYR A 72 N ALA A 6 SHEET 4 I 7 LEU A 95 SER A 98 1 N LEU A 95 O LYS A 71 SHEET 5 I 7 HIS A 113 THR A 117 1 O HIS A 113 N MET A 96 SHEET 6 I 7 GLY A 324 LYS A 327 1 O GLY A 324 N ARG A 116 SHEET 7 I 7 ASN A 319 ASP A 321 -1 O ASN A 319 N LYS A 327 SHEET 1 II 7 ASN A 168 ILE A 175 0 SHEET 2 II 7 ARG A 140 ASP A 146 1 N ILE A 141 O ASN A 168 SHEET 3 II 7 ASP A 195 GLY A 200 1 N PHE A 196 O ARG A 140 SHEET 4 II 7 GLN A 221 GLU A 226 1 N GLN A 221 O ASP A 195 SHEET 5 II 7 GLY A 243 THR A 247 1 N LEU A 245 O PHE A 222 SHEET 6 II 7 GLY A 332 HIS A 337 -1 N TRP A 336 O MET A 244 SHEET 7 II 7 SER A 341 ALA A 345 1 O SER A 341 N HIS A 337 SSBOND 1 CYS A 53 CYS A 78 1555 1555 2.02 CRYST1 68.800 69.340 74.280 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014535 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014422 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013463 0.00000