PDB Short entry for 2LEJ HEADER MEMBRANE PROTEIN 16-JUN-11 2LEJ TITLE HUMAN PRION PROTEIN MUTANT HUPRP(90-231, M129, V210I) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR PRION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 90-231; COMPND 5 SYNONYM: PRP, ASCR, PRP27-30, PRP33-35C; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRNP, PRIP, PRP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PPROEXHTA KEYWDS PATHOLOGIC MUTANT, MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR I.BILJAN,G.ILC,G.GIACHIN,A.RASPADORI,I.ZHUKOV,J.PLAVEC,G.LEGNAME REVDAT 3 14-JUN-23 2LEJ 1 REMARK SEQADV REVDAT 2 28-SEP-11 2LEJ 1 JRNL REVDAT 1 17-AUG-11 2LEJ 0 JRNL AUTH I.BILJAN,G.ILC,G.GIACHIN,A.RASPADORI,I.ZHUKOV,J.PLAVEC, JRNL AUTH 2 G.LEGNAME JRNL TITL TOWARD THE MOLECULAR BASIS OF INHERITED PRION DISEASES: NMR JRNL TITL 2 STRUCTURE OF THE HUMAN PRION PROTEIN WITH V210I MUTATION. JRNL REF J.MOL.BIOL. V. 412 660 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21839748 JRNL DOI 10.1016/J.JMB.2011.07.067 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, YASARA 11.5.22 REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), YASARA BIOSCIENCES (YASARA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LEJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-11. REMARK 100 THE DEPOSITION ID IS D_1000102296. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 90% H2O/10% D2O; 0.6 MM REMARK 210 [U-100% 13C; U-100% 15N] PROTEIN, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCO; 3D HNCA; 3D REMARK 210 HNCACB; 3D HBHA(CO)NH; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY ALIPHATIC; REMARK 210 3D 1H-13C NOESY AROMATIC; 3D REMARK 210 HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : UNIFORM NMR SYSTEM REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.115, CYANA 3.0, REMARK 210 PROCHECKNMR, WHAT IF REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 164 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 7 ARG A 208 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 9 ARG A 148 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 9 ARG A 151 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 9 ARG A 208 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 10 ARG A 208 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 12 ARG A 208 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 16 ARG A 208 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 17 ARG A 208 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 20 ARG A 208 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 141 -71.83 -130.35 REMARK 500 2 LYS A 101 156.09 64.09 REMARK 500 2 LYS A 104 106.57 12.91 REMARK 500 2 ALA A 113 25.32 46.73 REMARK 500 2 ALA A 115 49.70 -72.25 REMARK 500 2 ALA A 116 71.54 -150.97 REMARK 500 2 ALA A 118 -31.65 -144.57 REMARK 500 2 ALA A 120 23.10 -78.52 REMARK 500 2 VAL A 121 79.47 55.31 REMARK 500 2 PHE A 141 -52.85 -133.33 REMARK 500 2 GLU A 168 -8.90 65.05 REMARK 500 2 GLU A 221 -61.16 -97.88 REMARK 500 3 LYS A 104 131.02 65.93 REMARK 500 3 HIS A 111 31.63 -141.37 REMARK 500 3 ALA A 113 10.32 54.80 REMARK 500 3 PHE A 141 -67.80 -133.53 REMARK 500 3 GLU A 168 -46.31 67.79 REMARK 500 4 HIS A 96 -68.98 -148.51 REMARK 500 4 SER A 97 55.04 33.61 REMARK 500 4 MET A 112 -41.94 -135.77 REMARK 500 4 ALA A 118 -30.58 -142.21 REMARK 500 4 ALA A 120 21.16 -78.83 REMARK 500 4 VAL A 121 75.80 55.32 REMARK 500 4 PHE A 141 -65.50 -127.70 REMARK 500 4 MET A 166 -156.32 -92.77 REMARK 500 4 TYR A 169 -160.35 -64.64 REMARK 500 5 SER A 97 50.67 37.21 REMARK 500 5 ALA A 118 -32.31 -132.31 REMARK 500 5 VAL A 121 79.73 56.77 REMARK 500 5 PHE A 141 -86.21 -134.09 REMARK 500 6 MET A 112 49.81 -158.59 REMARK 500 6 ALA A 118 -31.05 -143.22 REMARK 500 6 PHE A 141 -68.12 -132.11 REMARK 500 7 ALA A 118 -30.44 -148.27 REMARK 500 7 VAL A 121 78.45 57.39 REMARK 500 7 PHE A 141 -88.61 -128.05 REMARK 500 8 VAL A 121 73.94 55.99 REMARK 500 8 PHE A 141 -84.05 -126.79 REMARK 500 8 SER A 170 -9.44 -56.84 REMARK 500 9 LYS A 104 133.40 65.16 REMARK 500 9 ALA A 118 -30.15 -147.07 REMARK 500 9 VAL A 121 70.14 55.70 REMARK 500 9 PHE A 141 -89.79 -124.60 REMARK 500 10 ALA A 118 -30.61 -151.01 REMARK 500 10 VAL A 121 71.35 55.18 REMARK 500 10 PHE A 141 -63.27 -138.03 REMARK 500 11 SER A 97 42.10 -75.46 REMARK 500 11 VAL A 121 72.68 55.87 REMARK 500 11 PHE A 141 -53.95 -133.74 REMARK 500 12 MET A 112 -38.33 -140.25 REMARK 500 REMARK 500 THIS ENTRY HAS 89 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QM1 RELATED DB: PDB REMARK 900 RELATED ID: 17714 RELATED DB: BMRB DBREF 2LEJ A 90 231 UNP P04156 PRIO_HUMAN 90 231 SEQADV 2LEJ GLY A 85 UNP P04156 EXPRESSION TAG SEQADV 2LEJ ALA A 86 UNP P04156 EXPRESSION TAG SEQADV 2LEJ MET A 87 UNP P04156 EXPRESSION TAG SEQADV 2LEJ ASP A 88 UNP P04156 EXPRESSION TAG SEQADV 2LEJ PRO A 89 UNP P04156 EXPRESSION TAG SEQADV 2LEJ ILE A 210 UNP P04156 VAL 210 ENGINEERED MUTATION SEQRES 1 A 147 GLY ALA MET ASP PRO GLY GLN GLY GLY GLY THR HIS SER SEQRES 2 A 147 GLN TRP ASN LYS PRO SER LYS PRO LYS THR ASN MET LYS SEQRES 3 A 147 HIS MET ALA GLY ALA ALA ALA ALA GLY ALA VAL VAL GLY SEQRES 4 A 147 GLY LEU GLY GLY TYR MET LEU GLY SER ALA MET SER ARG SEQRES 5 A 147 PRO ILE ILE HIS PHE GLY SER ASP TYR GLU ASP ARG TYR SEQRES 6 A 147 TYR ARG GLU ASN MET HIS ARG TYR PRO ASN GLN VAL TYR SEQRES 7 A 147 TYR ARG PRO MET ASP GLU TYR SER ASN GLN ASN ASN PHE SEQRES 8 A 147 VAL HIS ASP CYS VAL ASN ILE THR ILE LYS GLN HIS THR SEQRES 9 A 147 VAL THR THR THR THR LYS GLY GLU ASN PHE THR GLU THR SEQRES 10 A 147 ASP VAL LYS MET MET GLU ARG VAL ILE GLU GLN MET CYS SEQRES 11 A 147 ILE THR GLN TYR GLU ARG GLU SER GLN ALA TYR TYR GLN SEQRES 12 A 147 ARG GLY SER SER HELIX 1 1 SER A 143 MET A 154 1 12 HELIX 2 2 HIS A 155 TYR A 157 5 3 HELIX 3 3 SER A 170 THR A 193 1 24 HELIX 4 4 THR A 199 GLU A 221 1 23 HELIX 5 5 GLU A 221 GLY A 229 1 9 SHEET 1 A 2 MET A 129 LEU A 130 0 SHEET 2 A 2 TYR A 162 TYR A 163 -1 O TYR A 163 N MET A 129 SSBOND 1 CYS A 179 CYS A 214 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000