PDB Short entry for 2LGO HEADER ISOMERASE 29-JUL-11 2LGO TITLE SOLUTION NMR STRUCTURE OF A FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS TITLE 2 ISOMERASE FROM GIARDIA LAMBLIA, SEATTLE STRUCTURAL GENOMICS CENTER TITLE 3 FOR INFECTIOUS DISEASE TARGET GILAA.00840.A COMPND MOL_ID: 1; COMPND 2 MOLECULE: FKBP; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GIARDIA LAMBLIA; SOURCE 3 ORGANISM_TAXID: 184922; SOURCE 4 STRAIN: ATCC 50803; SOURCE 5 GENE: GL50803_10450; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: AVA0421 KEYWDS INFECTIOUS DISEASE, ISOMERASE, GIARDIASIS, SSGCID, STRUCTURAL KEYWDS 2 GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.W.BUCHKO,SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE AUTHOR 2 (SSGCID) REVDAT 3 14-JUN-23 2LGO 1 REMARK SEQADV REVDAT 2 18-DEC-13 2LGO 1 JRNL REVDAT 1 17-AUG-11 2LGO 0 JRNL AUTH G.W.BUCHKO,S.N.HEWITT,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL SOLUTION STRUCTURE OF A PUTATIVE FKBP-TYPE PEPTIDYL-PROPYL JRNL TITL 2 CIS-TRANS ISOMERASE FROM GIARDIA LAMBLIA. JRNL REF J.BIOMOL.NMR V. 57 369 2013 JRNL REFN ISSN 0925-2738 JRNL PMID 24293257 JRNL DOI 10.1007/S10858-013-9797-8 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.0, CNS 1.1, CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ (CNS), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE DETERMINATION WAS PERFORMED REMARK 3 ITERATIVELY USING CYANA (AUTOMATED NOESY ASSIGNMENTS). A TOTAL REMARK 3 OF 20 STRUCTURES OUT OF 100 WITH LOWEST TARGET FUNCTION FROM THE REMARK 3 FINAL CYANA CALCULATION WERE TAKEN AND REFINED BY RESTRAINED REMARK 3 MOLECULAR DYNAMICS/ENERGY MINIMIZATION IN EXPLICIT WATER (CNS) REMARK 3 AFTER ADDING 0% TO THE UPPER BOUNDARY LIMIT OF THE DISTANCE REMARK 3 RESTRAINTS AND THE VDW LIMIT TO THE LOWER RESTRAINT. PARAM19 WAS REMARK 3 USED FOR THE WATER REFINEMENT CALCULATIONS. REMARK 4 REMARK 4 2LGO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-AUG-11. REMARK 100 THE DEPOSITION ID IS D_1000102370. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 0.12 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-99% 13C; U-99% 15N] REMARK 210 PROTEIN, 100 MM SODIUM CHLORIDE, REMARK 210 20 MM TRIS, 1 MM DTT, 93% H2O/7% REMARK 210 D2O; 1 MM [U-99% 13C; U-99% 15N] REMARK 210 PROTEIN, 100 MM SODIUM CHLORIDE, REMARK 210 20 MM TRIS, 1 MM DTT, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-13C HSQC ALIPHATIC; 2D 1H- REMARK 210 13C HSQC AROMATIC; 3D CBCA(CO)NH; REMARK 210 3D HNCO; 3D HNCACB; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY ALIPHATIC; REMARK 210 3D 1H-13C NOESY AROMATIC; REMARK 210 DEUTERIUM EXCHANGE; 3D C(CO)NH; REMARK 210 2D HBCBCGCDCDHD; 2D HBCBCGCDCEHE REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 2007, SPARKY 3.115, PSVS REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 4 102.66 -57.50 REMARK 500 1 HIS A 5 81.92 -67.42 REMARK 500 1 THR A 16 80.71 47.37 REMARK 500 1 MET A 22 79.03 -68.85 REMARK 500 1 ALA A 24 90.14 -67.42 REMARK 500 1 TYR A 111 -77.77 89.33 REMARK 500 1 PRO A 117 133.96 -36.34 REMARK 500 1 LYS A 118 31.68 73.00 REMARK 500 1 ALA A 129 -173.61 -170.81 REMARK 500 2 GLU A 13 -18.70 73.29 REMARK 500 2 TYR A 111 -55.41 -139.06 REMARK 500 3 ALA A 2 88.58 -69.86 REMARK 500 3 HIS A 3 106.01 -55.26 REMARK 500 3 HIS A 7 99.05 -54.73 REMARK 500 3 THR A 11 100.61 -57.32 REMARK 500 3 PRO A 19 99.19 -62.85 REMARK 500 3 SER A 21 81.40 -67.10 REMARK 500 3 MET A 22 15.44 58.13 REMARK 500 3 TYR A 111 -57.18 -135.39 REMARK 500 3 ALA A 129 -173.41 -172.22 REMARK 500 4 HIS A 4 84.51 -68.89 REMARK 500 4 PRO A 19 34.94 -79.50 REMARK 500 4 TYR A 111 -63.64 -147.17 REMARK 500 5 ALA A 2 -70.68 -145.89 REMARK 500 5 HIS A 3 54.37 -94.10 REMARK 500 5 HIS A 5 -76.08 -92.26 REMARK 500 5 HIS A 7 39.54 -145.93 REMARK 500 5 HIS A 8 86.10 -65.40 REMARK 500 5 LEU A 12 14.93 -158.11 REMARK 500 5 THR A 16 87.00 -59.82 REMARK 500 5 SER A 23 37.81 -76.70 REMARK 500 5 PRO A 55 2.30 -64.38 REMARK 500 5 TYR A 111 -74.36 94.56 REMARK 500 6 TYR A 111 -61.39 -147.53 REMARK 500 7 ALA A 2 86.34 -68.08 REMARK 500 7 HIS A 4 95.95 -61.78 REMARK 500 7 MET A 9 91.22 -63.47 REMARK 500 7 PRO A 19 24.91 -71.49 REMARK 500 7 SER A 21 78.01 -66.40 REMARK 500 7 MET A 22 -29.79 179.70 REMARK 500 7 TYR A 111 -58.16 -137.21 REMARK 500 8 HIS A 8 39.40 -80.76 REMARK 500 8 GLN A 15 31.26 -86.46 REMARK 500 8 GLN A 17 -71.62 -74.17 REMARK 500 9 LEU A 12 -49.68 -165.21 REMARK 500 9 GLU A 13 48.51 -86.62 REMARK 500 9 MET A 22 46.56 -76.59 REMARK 500 9 SER A 23 -89.11 -152.66 REMARK 500 9 ALA A 24 143.69 174.53 REMARK 500 10 ASP A 61 133.21 -170.33 REMARK 500 REMARK 500 THIS ENTRY HAS 97 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GILAA.00840.A RELATED DB: TARGETDB REMARK 900 RELATED ID: 17818 RELATED DB: BMRB DBREF 2LGO A 22 130 UNP Q8I6M8 Q8I6M8_GIAIC 1 109 SEQADV 2LGO MET A 1 UNP Q8I6M8 EXPRESSION TAG SEQADV 2LGO ALA A 2 UNP Q8I6M8 EXPRESSION TAG SEQADV 2LGO HIS A 3 UNP Q8I6M8 EXPRESSION TAG SEQADV 2LGO HIS A 4 UNP Q8I6M8 EXPRESSION TAG SEQADV 2LGO HIS A 5 UNP Q8I6M8 EXPRESSION TAG SEQADV 2LGO HIS A 6 UNP Q8I6M8 EXPRESSION TAG SEQADV 2LGO HIS A 7 UNP Q8I6M8 EXPRESSION TAG SEQADV 2LGO HIS A 8 UNP Q8I6M8 EXPRESSION TAG SEQADV 2LGO MET A 9 UNP Q8I6M8 EXPRESSION TAG SEQADV 2LGO GLY A 10 UNP Q8I6M8 EXPRESSION TAG SEQADV 2LGO THR A 11 UNP Q8I6M8 EXPRESSION TAG SEQADV 2LGO LEU A 12 UNP Q8I6M8 EXPRESSION TAG SEQADV 2LGO GLU A 13 UNP Q8I6M8 EXPRESSION TAG SEQADV 2LGO ALA A 14 UNP Q8I6M8 EXPRESSION TAG SEQADV 2LGO GLN A 15 UNP Q8I6M8 EXPRESSION TAG SEQADV 2LGO THR A 16 UNP Q8I6M8 EXPRESSION TAG SEQADV 2LGO GLN A 17 UNP Q8I6M8 EXPRESSION TAG SEQADV 2LGO GLY A 18 UNP Q8I6M8 EXPRESSION TAG SEQADV 2LGO PRO A 19 UNP Q8I6M8 EXPRESSION TAG SEQADV 2LGO GLY A 20 UNP Q8I6M8 EXPRESSION TAG SEQADV 2LGO SER A 21 UNP Q8I6M8 EXPRESSION TAG SEQRES 1 A 130 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 130 ALA GLN THR GLN GLY PRO GLY SER MET SER ALA GLN LEU SEQRES 3 A 130 GLU LYS LYS VAL LEU THR PRO GLY ASP GLY VAL THR LYS SEQRES 4 A 130 PRO GLN ALA GLY LYS LYS VAL THR VAL HIS TYR ASP GLY SEQRES 5 A 130 ARG PHE PRO ASP GLY LYS GLN PHE ASP SER SER ARG SER SEQRES 6 A 130 ARG GLY LYS PRO PHE GLN PHE THR LEU GLY ALA GLY GLU SEQRES 7 A 130 VAL ILE LYS GLY TRP ASP GLN GLY VAL ALA THR MET THR SEQRES 8 A 130 LEU GLY GLU LYS ALA LEU PHE THR ILE PRO TYR GLN LEU SEQRES 9 A 130 ALA TYR GLY GLU ARG GLY TYR PRO PRO VAL ILE PRO PRO SEQRES 10 A 130 LYS ALA THR LEU VAL PHE GLU VAL GLU LEU LEU ALA VAL HELIX 1 1 ILE A 80 MET A 90 1 11 SHEET 1 A 5 LYS A 28 THR A 32 0 SHEET 2 A 5 GLU A 94 ILE A 100 -1 O LYS A 95 N THR A 32 SHEET 3 A 5 LEU A 121 ALA A 129 -1 O PHE A 123 N PHE A 98 SHEET 4 A 5 LYS A 45 ARG A 53 -1 N ARG A 53 O VAL A 122 SHEET 5 A 5 GLN A 59 ASP A 61 -1 O PHE A 60 N GLY A 52 SHEET 1 B 5 LYS A 28 THR A 32 0 SHEET 2 B 5 GLU A 94 ILE A 100 -1 O LYS A 95 N THR A 32 SHEET 3 B 5 LEU A 121 ALA A 129 -1 O PHE A 123 N PHE A 98 SHEET 4 B 5 LYS A 45 ARG A 53 -1 N ARG A 53 O VAL A 122 SHEET 5 B 5 PHE A 70 THR A 73 -1 O PHE A 72 N VAL A 46 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000