PDB Short entry for 2LLM HEADER PROTEIN FIBRIL 15-NOV-11 2LLM TITLE STRUCTURE OF AMYLOID PRECURSOR PROTEIN'S TRANSMEMBRANE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMYLOID BETA A4 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 686-726; COMPND 5 SYNONYM: ABPP, APPI, APP, ALZHEIMER DISEASE AMYLOID PROTEIN, CEREBRAL COMPND 6 VASCULAR AMYLOID PEPTIDE, CVAP, PREA4, PROTEASE NEXIN-II, PN-II, N- COMPND 7 APP, SOLUBLE APP-ALPHA, S-APP-ALPHA, SOLUBLE APP-BETA, S-APP-BETA, COMPND 8 C99, BETA-AMYLOID PROTEIN 42, BETA-APP42, BETA-AMYLOID PROTEIN 40, COMPND 9 BETA-APP40, C83, P3(42), P3(40), C80; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APP, A4, AD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEMEX-1 KEYWDS ALZHEIMER'S DISEASE, PROTEIN FIBRIL EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.D.NADEZHDIN,O.V.BOCHAROVA,E.V.BOCHAROV,A.S.ARSENIEV REVDAT 2 14-JUN-23 2LLM 1 REMARK SEQADV REVDAT 1 20-JUN-12 2LLM 0 JRNL AUTH K.D.NADEZHDIN,O.V.BOCHAROVA,E.V.BOCHAROV,A.S.ARSENIEV JRNL TITL STRUCTURAL AND DYNAMIC STUDY OF THE TRANSMEMBRANE DOMAIN OF JRNL TITL 2 THE AMYLOID PRECURSOR PROTEIN. JRNL REF ACTA NATURAE V. 3 69 2011 JRNL REFN ISSN 2075-8251 JRNL PMID 22649674 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, CYANA 2.1, TALOS+ REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), GUNTERT, MUMENTHALER AND REMARK 3 WUTHRICH (CYANA), CORNILESCU, DELAGLIO AND BAX REMARK 3 (TALOS+) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LLM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000102532. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 318 REMARK 210 PH : 4.6 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.3-1 MM [U-100% 13C; U-100% REMARK 210 15N] APPJMTM, 21-70 MM [U-100% REMARK 210 2H] DPC, 95% H2O/5% D2O; 0.3-1 REMARK 210 MM [U-100% 15N] APPJMTM, 21-70 REMARK 210 MM DPC, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HNCA; 3D HN(CO)CA; REMARK 210 3D HCCH-TOCSY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-15N NOESY; 3D REMARK 210 1H-15N TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, CYANA 2.1, MOLMOL, REMARK 210 TALOS+, CARA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 14 74.61 -159.28 REMARK 500 1 LYS A 42 88.13 56.67 REMARK 500 2 VAL A 12 -72.38 -126.67 REMARK 500 2 SER A 14 42.39 -161.99 REMARK 500 2 ASN A 15 97.07 -172.99 REMARK 500 3 SER A 2 -71.63 -130.96 REMARK 500 3 LYS A 4 -50.27 -124.59 REMARK 500 3 SER A 14 -68.38 -154.89 REMARK 500 3 ASN A 15 -65.87 -122.52 REMARK 500 3 LYS A 16 -74.42 -165.31 REMARK 500 3 LYS A 42 130.83 -172.47 REMARK 500 5 GLN A 3 55.37 -113.32 REMARK 500 5 VAL A 12 -65.27 -134.74 REMARK 500 6 GLN A 3 57.47 -172.10 REMARK 500 6 LYS A 4 -49.05 -133.82 REMARK 500 6 SER A 14 -74.12 -54.95 REMARK 500 6 ASN A 15 27.94 -162.04 REMARK 500 7 SER A 2 79.50 58.70 REMARK 500 7 GLN A 3 32.89 -145.10 REMARK 500 7 SER A 14 -74.28 -162.41 REMARK 500 7 ASN A 15 -75.05 -150.89 REMARK 500 7 LYS A 16 -74.21 -143.71 REMARK 500 8 GLN A 3 49.04 -96.91 REMARK 500 8 LYS A 42 -178.84 -58.53 REMARK 500 9 SER A 14 82.86 -175.37 REMARK 500 9 ASN A 15 -68.42 -152.02 REMARK 500 9 LYS A 16 -74.30 -147.88 REMARK 500 10 GLN A 3 42.16 -150.50 REMARK 500 10 SER A 14 41.50 -108.29 REMARK 500 10 ASN A 15 77.41 59.26 REMARK 500 10 LYS A 42 -55.41 -170.50 REMARK 500 11 LYS A 41 96.90 60.73 REMARK 500 12 GLN A 3 52.34 -174.93 REMARK 500 12 VAL A 12 76.34 -151.93 REMARK 500 12 SER A 14 -67.39 -147.36 REMARK 500 12 LYS A 16 -69.54 71.57 REMARK 500 13 LYS A 16 -75.73 69.01 REMARK 500 13 LYS A 41 -73.98 -65.85 REMARK 500 13 LYS A 42 177.77 59.01 REMARK 500 14 GLN A 3 33.73 -142.74 REMARK 500 14 SER A 14 71.09 -160.12 REMARK 500 14 ASN A 15 -68.33 -126.76 REMARK 500 14 LYS A 16 -74.46 -143.91 REMARK 500 15 GLN A 3 30.02 -156.98 REMARK 500 15 VAL A 12 -68.60 -91.91 REMARK 500 15 SER A 14 86.41 56.51 REMARK 500 15 ASN A 15 85.57 -169.70 REMARK 500 15 LYS A 16 -73.51 -87.39 REMARK 500 15 LYS A 41 96.78 61.79 REMARK 500 15 LYS A 42 -68.94 -94.50 REMARK 500 REMARK 500 THIS ENTRY HAS 63 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18080 RELATED DB: BMRB DBREF 2LLM A 3 43 UNP P05067 A4_HUMAN 686 726 SEQADV 2LLM GLY A 1 UNP P05067 EXPRESSION TAG SEQADV 2LLM SER A 2 UNP P05067 EXPRESSION TAG SEQRES 1 A 43 GLY SER GLN LYS LEU VAL PHE PHE ALA GLU ASP VAL GLY SEQRES 2 A 43 SER ASN LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY SEQRES 3 A 43 VAL VAL ILE ALA THR VAL ILE VAL ILE THR LEU VAL MET SEQRES 4 A 43 LEU LYS LYS LYS HELIX 1 1 LYS A 4 VAL A 12 1 9 HELIX 2 2 ASN A 15 LYS A 42 1 28 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000