PDB Short entry for 2LLY HEADER TRANSPORT PROTEIN 18-NOV-11 2LLY TITLE NMR STRUCTURES OF THE TRANSMEMBRANE DOMAINS OF THE NACHR A4 SUBUNIT COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURONAL ACETYLCHOLINE RECEPTOR SUBUNIT ALPHA-4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HELICAL TRANSMEMBRANE REGION, RESIDUES 242-339 AND RESIDUES COMPND 5 598-625; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CHRNA4, NACRA4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PTBSG1 KEYWDS ACETYLCHOLINE RECEPTOR, TRANSMEMBRANE DOMAIN, TRANSPORT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR V.BONDARENKO,D.MOWREY,T.TILLMAN,T.CUI,L.T.LIU,Y.XU,P.TANG REVDAT 2 14-JUN-23 2LLY 1 REMARK SEQADV REVDAT 1 28-MAR-12 2LLY 0 JRNL AUTH V.BONDARENKO,D.MOWREY,T.TILLMAN,T.CUI,L.T.LIU,Y.XU,P.TANG JRNL TITL NMR STRUCTURES OF THE TRANSMEMBRANE DOMAINS OF THE A4B2 JRNL TITL 2 NACHR. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1818 1261 2012 JRNL REFN ISSN 0006-3002 JRNL PMID 22361591 JRNL DOI 10.1016/J.BBAMEM.2012.02.008 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.0, CYANA 3.0 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LLY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1000102544. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 318 REMARK 210 PH : 4.65 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.25 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 5 MM SODIUM ACETATE, REMARK 210 1.5 % LDAO, 10 MM SODIUM REMARK 210 CHLORIDE, 5 % [U-100% 2H] D2O, REMARK 210 0.1 MM DSS, 10 MM SODIUM REMARK 210 CHLORIDE, 20 MM BETA- REMARK 210 MERCAPTOETHANOL, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 3D HNCA; 3D HN(CO)CA; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 2D 1H-15N REMARK 210 HSQC; 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ; 800 MHZ; 900 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 SER A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 5 32.09 -174.08 REMARK 500 1 PRO A 7 -171.30 -69.81 REMARK 500 1 PRO A 32 95.64 -69.78 REMARK 500 1 ILE A 60 73.70 51.78 REMARK 500 1 SER A 67 72.97 61.58 REMARK 500 1 PRO A 68 -176.86 -69.80 REMARK 500 1 SER A 69 -67.37 -99.86 REMARK 500 1 GLU A 100 -41.10 -171.81 REMARK 500 1 HIS A 102 -57.93 -134.16 REMARK 500 1 LEU A 130 72.03 55.11 REMARK 500 2 GLU A 5 32.32 -174.84 REMARK 500 2 PRO A 7 -179.66 -69.71 REMARK 500 2 ILE A 60 74.05 55.52 REMARK 500 2 THR A 63 27.16 -157.14 REMARK 500 2 GLU A 100 -44.34 -175.44 REMARK 500 2 LEU A 130 71.40 62.62 REMARK 500 3 GLU A 5 32.31 -174.63 REMARK 500 3 ILE A 60 74.04 58.52 REMARK 500 3 THR A 63 25.28 -153.40 REMARK 500 3 HIS A 95 -53.59 -164.65 REMARK 500 3 GLU A 100 -64.77 -177.15 REMARK 500 3 HIS A 102 -54.03 -147.09 REMARK 500 3 LEU A 130 71.33 58.27 REMARK 500 4 GLU A 5 32.38 -174.85 REMARK 500 4 PRO A 7 -178.99 -69.81 REMARK 500 4 ILE A 60 74.20 63.63 REMARK 500 4 SER A 62 105.20 63.21 REMARK 500 4 SER A 64 -169.92 -171.15 REMARK 500 4 ARG A 97 142.53 -172.30 REMARK 500 4 GLU A 100 -38.93 -169.73 REMARK 500 4 THR A 101 -74.21 -104.53 REMARK 500 4 HIS A 102 -51.78 -159.68 REMARK 500 4 LEU A 130 70.22 62.19 REMARK 500 4 ALA A 135 -71.40 -82.04 REMARK 500 5 GLU A 5 32.34 -174.69 REMARK 500 5 LEU A 31 68.54 -167.61 REMARK 500 5 SER A 33 -67.25 -153.19 REMARK 500 5 ILE A 60 76.75 51.70 REMARK 500 5 PRO A 68 -176.94 -69.78 REMARK 500 5 HIS A 95 45.84 -149.57 REMARK 500 5 GLU A 100 -43.87 -173.94 REMARK 500 5 LEU A 130 160.69 63.03 REMARK 500 5 ALA A 135 -68.33 -92.41 REMARK 500 6 GLU A 5 32.38 -174.83 REMARK 500 6 PRO A 7 -178.48 -69.81 REMARK 500 6 LEU A 31 71.98 -119.48 REMARK 500 6 SER A 33 -47.48 -171.42 REMARK 500 6 ILE A 60 73.47 53.21 REMARK 500 6 SER A 62 -39.98 -165.52 REMARK 500 6 PRO A 68 97.26 -69.73 REMARK 500 REMARK 500 THIS ENTRY HAS 177 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18093 RELATED DB: BMRB REMARK 900 RELATED ID: 2LM2 RELATED DB: PDB DBREF 2LLY A 4 103 UNP P43681 ACHA4_HUMAN 240 339 DBREF 2LLY A 109 137 UNP P43681 ACHA4_HUMAN 598 626 SEQADV 2LLY SER A 1 UNP P43681 EXPRESSION TAG SEQADV 2LLY ASN A 2 UNP P43681 EXPRESSION TAG SEQADV 2LLY ALA A 3 UNP P43681 EXPRESSION TAG SEQADV 2LLY GLU A 4 UNP P43681 ARG 240 ENGINEERED MUTATION SEQADV 2LLY GLU A 5 UNP P43681 ARG 241 ENGINEERED MUTATION SEQADV 2LLY SER A 65 UNP P43681 LEU 301 ENGINEERED MUTATION SEQADV 2LLY SER A 67 UNP P43681 ILE 303 ENGINEERED MUTATION SEQADV 2LLY SER A 69 UNP P43681 LEU 305 ENGINEERED MUTATION SEQADV 2LLY GLU A 100 UNP P43681 ARG 336 ENGINEERED MUTATION SEQADV 2LLY GLY A 104 UNP P43681 LINKER SEQADV 2LLY GLY A 105 UNP P43681 LINKER SEQADV 2LLY GLY A 106 UNP P43681 LINKER SEQADV 2LLY GLY A 107 UNP P43681 LINKER SEQADV 2LLY GLY A 108 UNP P43681 LINKER SEQADV 2LLY GLU A 137 UNP P43681 MET 626 ENGINEERED MUTATION SEQRES 1 A 137 SER ASN ALA GLU GLU LEU PRO LEU PHE TYR THR ILE ASN SEQRES 2 A 137 LEU ILE ILE PRO CYS LEU LEU ILE SER CYS LEU THR VAL SEQRES 3 A 137 LEU VAL PHE TYR LEU PRO SER GLU CYS GLY GLU LYS ILE SEQRES 4 A 137 THR LEU CYS ILE SER VAL LEU LEU SER LEU THR VAL PHE SEQRES 5 A 137 LEU LEU LEU ILE THR GLU ILE ILE PRO SER THR SER SER SEQRES 6 A 137 VAL SER PRO SER ILE GLY GLU TYR LEU LEU PHE THR MET SEQRES 7 A 137 ILE PHE VAL THR LEU SER ILE VAL ILE THR VAL PHE VAL SEQRES 8 A 137 LEU ASN VAL HIS HIS ARG SER PRO GLU THR HIS THR GLY SEQRES 9 A 137 GLY GLY GLY GLY ILE ASP ARG ILE PHE LEU TRP MET PHE SEQRES 10 A 137 ILE ILE VAL CYS LEU LEU GLY THR VAL GLY LEU PHE LEU SEQRES 11 A 137 PRO PRO TRP LEU ALA GLY GLU HELIX 1 1 PRO A 7 LEU A 31 1 25 HELIX 2 2 GLY A 36 ILE A 60 1 25 HELIX 3 3 ILE A 70 VAL A 94 1 25 HELIX 4 4 GLY A 108 LEU A 130 1 23 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000