PDB Short entry for 2LM0 HEADER NUCLEAR PROTEIN 18-NOV-11 2LM0 TITLE SOLUTION STRUCTURE OF THE AF4-AF9 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: AF4/FMR2 FAMILY MEMBER 1/PROTEIN AF-9 CHIMERA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 738-779, UNP RESIDUES 490-568; COMPND 5 SYNONYM: ALL1-FUSED GENE FROM CHROMOSOME 4 PROTEIN, PROTEIN AF-4, COMPND 6 PROTEIN FEL, PROTO-ONCOGENE AF4, ALL1-FUSED GENE FROM CHROMOSOME 9 COMPND 7 PROTEIN, MYELOID/LYMPHOID OR MIXED-LINEAGE LEUKEMIA TRANSLOCATED TO COMPND 8 CHROMOSOME 3 PROTEIN, YEATS DOMAIN-CONTAINING PROTEIN 3; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AFF1, AF4, FEL, MLLT2, PBM1, MLLT3, AF9, YEATS3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET 32A; SOURCE 10 OTHER_DETAILS: THIOREDOXIN CODING REGION REMOVED BY NDE1 CLEAVAGE KEYWDS INTRINSICALLY DISORDERED, NUCLEAR PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR B.I.LEACH,A.KUNTIMADDI,C.R.SCHMIDT,T.CIERPICKI,S.A.JOHNSON, AUTHOR 2 J.H.BUSHWELLER REVDAT 2 30-JAN-13 2LM0 1 JRNL REVDAT 1 09-JAN-13 2LM0 0 JRNL AUTH B.I.LEACH,A.KUNTIMADDI,C.R.SCHMIDT,T.CIERPICKI,S.A.JOHNSON, JRNL AUTH 2 J.H.BUSHWELLER JRNL TITL LEUKEMIA FUSION TARGET AF9 IS AN INTRINSICALLY DISORDERED JRNL TITL 2 TRANSCRIPTIONAL REGULATOR THAT RECRUITS MULTIPLE PARTNERS JRNL TITL 3 VIA COUPLED FOLDING AND BINDING. JRNL REF STRUCTURE V. 21 176 2013 JRNL REFN ISSN 0969-2126 JRNL PMID 23260655 JRNL DOI 10.1016/J.STR.2012.11.011 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH 2.27 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SIMULATED ANNEALING WITH RDCS REMARK 4 REMARK 4 2LM0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-NOV-11. REMARK 100 THE RCSB ID CODE IS RCSB102546. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 9.3 MM BIS-TRIS, 15.8 MM MES, REMARK 210 100 MM SODIUM CHLORIDE, 1 MM DTT, 5 % D-99% D2O, 400 UM [U-100% REMARK 210 13C; U-100% 15N] PROTEIN, 95% H2O/5% D2O; 15.8 MM MES, 9.3 MM BIS REMARK 210 -TRIS, 100 MM SODIUM CHLORIDE, 1 MM DTT, 5 % D-99% D2O, 2 MM [U- REMARK 210 100% 13C; U-100% 15N] PROTEIN, 95% H2O/5% D2O; 9.3 MM BIS-TRIS, REMARK 210 15.8 MM MES, 100 MM SODIUM CHLORIDE, 1 MM DTT, 5 % D-99% D2O, 400 REMARK 210 UM [U-100% 13C; U-100% 15N] PROTEIN, 3.5 % (3-ACRYLAMIDOPROPYL)- REMARK 210 TRIMETHYLAMMONIUM CHLORIDE, 3.5 % ACRYLIC ACID, 95% H2O/5% D2O; REMARK 210 9.3 MM BIS-TRIS, 15.8 MM MES, 100 MM SODIUM CHLORIDE, 1 MM DTT, 5 REMARK 210 % D-99% D2O, 400 UM [U-100% 13C; U-100% 15N] PROTEIN, 3.5 % (3- REMARK 210 ACRYLAMIDOPROPYL)-TRIMETHYLAMMONIUM CHLORIDE, 3.5 % ACRYLAMIDE, REMARK 210 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HCCH-TOCSY; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 3D HNCO IPAP REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; US2 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XPLOR-NIH 2.27, TOPSPIN, REMARK 210 NMRPIPE, SPARKY, CYANA 2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE2 HIS A 1535 HG SER A 1549 1.23 REMARK 500 O ILE A 1530 H THR A 1533 1.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 743 118.02 -171.86 REMARK 500 1 LYS A 747 -141.87 -69.51 REMARK 500 1 SER A 750 164.01 -48.43 REMARK 500 1 PRO A 751 107.80 -40.12 REMARK 500 1 LEU A 752 103.80 -45.19 REMARK 500 1 THR A 755 69.24 31.09 REMARK 500 1 PRO A 757 155.69 -38.59 REMARK 500 1 PRO A 758 -164.46 -71.26 REMARK 500 1 SER A 760 -124.98 -150.32 REMARK 500 1 THR A 766 134.24 -35.14 REMARK 500 1 LEU A 769 37.40 -82.54 REMARK 500 1 SER A 771 -56.32 84.42 REMARK 500 1 MET A1001 113.45 56.02 REMARK 500 1 SER A1490 -161.24 -67.19 REMARK 500 1 ASP A1491 -6.49 -162.89 REMARK 500 1 GLN A1493 82.43 54.93 REMARK 500 1 ASN A1496 -166.90 -71.82 REMARK 500 1 CYS A1499 163.00 55.48 REMARK 500 1 LYS A1501 -103.67 -141.57 REMARK 500 1 ALA A1502 -36.76 -165.53 REMARK 500 1 TYR A1503 -27.52 -39.48 REMARK 500 1 ARG A1512 -70.56 -64.86 REMARK 500 1 THR A1516 46.94 -91.66 REMARK 500 1 ARG A1518 67.68 -154.36 REMARK 500 1 ARG A1520 -178.56 48.64 REMARK 500 1 HIS A1521 -33.47 72.89 REMARK 500 1 HIS A1535 29.84 111.12 REMARK 500 1 ASN A1540 3.72 -69.65 REMARK 500 1 ASP A1551 154.89 -46.25 REMARK 500 1 SER A1565 -91.62 -59.14 REMARK 500 1 THR A1567 175.33 -50.19 REMARK 500 2 LEU A 739 70.66 48.93 REMARK 500 2 PRO A 740 165.70 -48.87 REMARK 500 2 PRO A 742 -164.57 -68.11 REMARK 500 2 LEU A 743 -65.90 -149.59 REMARK 500 2 ASP A 745 116.96 -166.63 REMARK 500 2 THR A 746 -115.14 -76.42 REMARK 500 2 LEU A 748 -85.49 -78.50 REMARK 500 2 LEU A 749 84.23 -171.58 REMARK 500 2 SER A 750 -46.01 179.74 REMARK 500 2 THR A 755 146.52 58.30 REMARK 500 2 PRO A 757 102.32 -39.21 REMARK 500 2 SER A 760 -133.85 -154.87 REMARK 500 2 THR A 766 161.98 -48.18 REMARK 500 2 PRO A 777 -174.47 -48.18 REMARK 500 2 LYS A 779 77.59 -158.85 REMARK 500 2 PRO A1000 -167.11 -51.23 REMARK 500 2 MET A1001 -44.93 -150.73 REMARK 500 2 ILE A1494 84.06 48.78 REMARK 500 2 ASP A1500 -21.62 69.43 REMARK 500 REMARK 500 THIS ENTRY HAS 340 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18094 RELATED DB: BMRB DBREF 2LM0 A 738 779 UNP P51825 AFF1_HUMAN 738 779 DBREF 2LM0 A 1490 1568 UNP P42568 AF9_HUMAN 490 568 SEQADV 2LM0 THR A 1 UNP P51825 EXPRESSION TAG SEQADV 2LM0 PRO A 1000 UNP P51825 LINKER SEQADV 2LM0 MET A 1001 UNP P51825 LINKER SEQADV 2LM0 GLY A 1002 UNP P51825 LINKER SEQRES 1 A 125 THR ARG LEU PRO LEU PRO LEU ARG ASP THR LYS LEU LEU SEQRES 2 A 125 SER PRO LEU ARG ASP THR PRO PRO PRO GLN SER LEU MET SEQRES 3 A 125 VAL LYS ILE THR LEU ASP LEU LEU SER ARG ILE PRO GLN SEQRES 4 A 125 PRO PRO GLY LYS PRO MET GLY SER ASP LYS GLN ILE LYS SEQRES 5 A 125 ASN GLY GLU CYS ASP LYS ALA TYR LEU ASP GLU LEU VAL SEQRES 6 A 125 GLU LEU HIS ARG ARG LEU MET THR LEU ARG GLU ARG HIS SEQRES 7 A 125 ILE LEU GLN GLN ILE VAL ASN LEU ILE GLU GLU THR GLY SEQRES 8 A 125 HIS PHE HIS ILE THR ASN THR THR PHE ASP PHE ASP LEU SEQRES 9 A 125 CYS SER LEU ASP LYS THR THR VAL ARG LYS LEU GLN SER SEQRES 10 A 125 TYR LEU GLU THR SER GLY THR SER HELIX 1 1 TYR A 1503 THR A 1516 1 14 HELIX 2 2 ILE A 1522 GLU A 1532 1 11 HELIX 3 3 ASP A 1551 LEU A 1562 1 12 SHEET 1 A 3 VAL A 763 LYS A 764 0 SHEET 2 A 3 PHE A1543 PHE A1545 -1 O PHE A1545 N VAL A 763 SHEET 3 A 3 PHE A1536 ILE A1538 -1 N HIS A1537 O ASP A1544 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000