PDB Short entry for 2LNQ HEADER PROTEIN FIBRIL 03-JAN-12 2LNQ TITLE 40-RESIDUE D23N BETA AMYLOID FIBRIL COMPND MOL_ID: 1; COMPND 2 MOLECULE: P3(40); COMPND 3 CHAIN: A, B, C, D, E, F, G, H; COMPND 4 SYNONYM: AMYLOID BETA A4 PROTEIN, ABPP, APPI, APP, ALZHEIMER DISEASE COMPND 5 AMYLOID PROTEIN, CEREBRAL VASCULAR AMYLOID PEPTIDE, CVAP, PREA4, COMPND 6 PROTEASE NEXIN-II, PN-II; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606 KEYWDS IOWA MUTANT, ANTIPARALLEL BETA SHEET, PROTEIN FIBRIL EXPDTA SOLID-STATE NMR NUMMDL 10 AUTHOR W.QIANG,W.YAU,Y.LUO,M.P.MATTSON,R.TYCKO REVDAT 3 14-JUN-23 2LNQ 1 SEQADV REVDAT 2 28-AUG-13 2LNQ 1 JRNL REVDAT 1 08-FEB-12 2LNQ 0 JRNL AUTH W.QIANG,W.M.YAU,Y.LUO,M.P.MATTSON,R.TYCKO JRNL TITL ANTIPARALLEL BETA-SHEET ARCHITECTURE IN IOWA-MUTANT JRNL TITL 2 BETA-AMYLOID FIBRILS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 4443 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22403062 JRNL DOI 10.1073/PNAS.1111305109 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH 2.28.1 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LNQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000102608. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 279 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 25 UM [U-13C] PROTEIN, H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 13C-13C FPRFDR; 2D 13C-13C REMARK 210 RAD; 2D 13C-13C CHHC; 1D 13C REMARK 210 PITHIRDS-CT REMARK 210 SPECTROMETER FIELD STRENGTH : 400 MHZ REMARK 210 SPECTROMETER MODEL : INFINITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 12 REMARK 210 REMARK 210 REMARK: NULL REMARK 217 REMARK 217 SOLID STATE NMR STUDY REMARK 217 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLID REMARK 217 STATE NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 217 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 217 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 ASP A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 PHE A 4 REMARK 465 ARG A 5 REMARK 465 HIS A 6 REMARK 465 ASP A 7 REMARK 465 SER A 8 REMARK 465 GLY A 9 REMARK 465 TYR A 10 REMARK 465 GLU A 11 REMARK 465 VAL A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 ASP B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 3 REMARK 465 PHE B 4 REMARK 465 ARG B 5 REMARK 465 HIS B 6 REMARK 465 ASP B 7 REMARK 465 SER B 8 REMARK 465 GLY B 9 REMARK 465 TYR B 10 REMARK 465 GLU B 11 REMARK 465 VAL B 12 REMARK 465 HIS B 13 REMARK 465 HIS B 14 REMARK 465 ASP C 1 REMARK 465 ALA C 2 REMARK 465 GLU C 3 REMARK 465 PHE C 4 REMARK 465 ARG C 5 REMARK 465 HIS C 6 REMARK 465 ASP C 7 REMARK 465 SER C 8 REMARK 465 GLY C 9 REMARK 465 TYR C 10 REMARK 465 GLU C 11 REMARK 465 VAL C 12 REMARK 465 HIS C 13 REMARK 465 HIS C 14 REMARK 465 ASP D 1 REMARK 465 ALA D 2 REMARK 465 GLU D 3 REMARK 465 PHE D 4 REMARK 465 ARG D 5 REMARK 465 HIS D 6 REMARK 465 ASP D 7 REMARK 465 SER D 8 REMARK 465 GLY D 9 REMARK 465 TYR D 10 REMARK 465 GLU D 11 REMARK 465 VAL D 12 REMARK 465 HIS D 13 REMARK 465 HIS D 14 REMARK 465 ASP E 1 REMARK 465 ALA E 2 REMARK 465 GLU E 3 REMARK 465 PHE E 4 REMARK 465 ARG E 5 REMARK 465 HIS E 6 REMARK 465 ASP E 7 REMARK 465 SER E 8 REMARK 465 GLY E 9 REMARK 465 TYR E 10 REMARK 465 GLU E 11 REMARK 465 VAL E 12 REMARK 465 HIS E 13 REMARK 465 HIS E 14 REMARK 465 ASP F 1 REMARK 465 ALA F 2 REMARK 465 GLU F 3 REMARK 465 PHE F 4 REMARK 465 ARG F 5 REMARK 465 HIS F 6 REMARK 465 ASP F 7 REMARK 465 SER F 8 REMARK 465 GLY F 9 REMARK 465 TYR F 10 REMARK 465 GLU F 11 REMARK 465 VAL F 12 REMARK 465 HIS F 13 REMARK 465 HIS F 14 REMARK 465 ASP G 1 REMARK 465 ALA G 2 REMARK 465 GLU G 3 REMARK 465 PHE G 4 REMARK 465 ARG G 5 REMARK 465 HIS G 6 REMARK 465 ASP G 7 REMARK 465 SER G 8 REMARK 465 GLY G 9 REMARK 465 TYR G 10 REMARK 465 GLU G 11 REMARK 465 VAL G 12 REMARK 465 HIS G 13 REMARK 465 HIS G 14 REMARK 465 ASP H 1 REMARK 465 ALA H 2 REMARK 465 GLU H 3 REMARK 465 PHE H 4 REMARK 465 ARG H 5 REMARK 465 HIS H 6 REMARK 465 ASP H 7 REMARK 465 SER H 8 REMARK 465 GLY H 9 REMARK 465 TYR H 10 REMARK 465 GLU H 11 REMARK 465 VAL H 12 REMARK 465 HIS H 13 REMARK 465 HIS H 14 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD21 ASN C 23 H GLN D 15 1.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 26 -51.48 -163.22 REMARK 500 1 LYS A 28 -7.40 -165.93 REMARK 500 1 ASN D 27 -169.87 -123.28 REMARK 500 1 LYS D 28 -48.15 -163.52 REMARK 500 1 SER E 26 -168.24 -115.00 REMARK 500 1 LYS G 28 -61.44 -99.09 REMARK 500 1 VAL H 24 -33.48 -160.73 REMARK 500 1 SER H 26 -175.10 53.03 REMARK 500 1 ASN H 27 153.80 -47.88 REMARK 500 2 VAL A 24 -166.20 -77.11 REMARK 500 2 SER A 26 -107.68 -168.43 REMARK 500 2 ASN A 27 61.90 -168.48 REMARK 500 2 LYS A 28 -111.71 45.51 REMARK 500 2 VAL B 24 -37.22 -149.11 REMARK 500 2 SER B 26 82.81 -170.33 REMARK 500 2 ASN B 27 -162.98 -76.30 REMARK 500 2 LYS B 28 -8.25 -142.07 REMARK 500 2 SER C 26 -109.06 -161.08 REMARK 500 2 ASN C 27 -162.71 -79.77 REMARK 500 2 SER D 26 139.58 -177.84 REMARK 500 2 ASN D 27 110.49 -176.77 REMARK 500 2 VAL F 24 37.44 -143.89 REMARK 500 2 SER F 26 71.59 48.61 REMARK 500 2 LYS F 28 -147.18 -144.98 REMARK 500 2 ASN G 27 171.67 56.01 REMARK 500 3 LYS B 28 -27.61 -153.16 REMARK 500 3 VAL C 24 -77.21 -99.27 REMARK 500 3 LYS C 28 44.82 -158.63 REMARK 500 3 ASN D 27 -46.80 -136.25 REMARK 500 3 LYS D 28 -85.93 54.05 REMARK 500 3 LYS E 28 -132.81 -132.13 REMARK 500 3 VAL G 24 33.54 -149.53 REMARK 500 3 SER G 26 -73.08 -172.64 REMARK 500 3 ASN G 27 -178.61 59.52 REMARK 500 3 LYS G 28 117.26 -168.86 REMARK 500 4 VAL A 24 -12.78 -48.31 REMARK 500 4 SER A 26 -141.37 -61.55 REMARK 500 4 LYS A 28 66.79 -157.60 REMARK 500 4 ASN B 27 55.99 -155.95 REMARK 500 4 SER C 26 90.47 -162.94 REMARK 500 4 LYS C 28 34.01 -172.28 REMARK 500 4 ASN D 27 102.98 -173.28 REMARK 500 4 VAL E 24 -73.94 -93.23 REMARK 500 4 SER F 26 173.14 174.68 REMARK 500 4 ASN F 27 155.53 56.65 REMARK 500 4 LYS F 28 84.83 -165.75 REMARK 500 4 SER G 26 100.24 48.92 REMARK 500 4 LYS G 28 157.00 -47.42 REMARK 500 5 VAL A 24 -30.95 -144.47 REMARK 500 5 SER A 26 -175.11 -63.53 REMARK 500 REMARK 500 THIS ENTRY HAS 138 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18175 RELATED DB: BMRB DBREF 2LNQ A 1 40 UNP P05067 A4_HUMAN 672 711 DBREF 2LNQ B 1 40 UNP P05067 A4_HUMAN 672 711 DBREF 2LNQ C 1 40 UNP P05067 A4_HUMAN 672 711 DBREF 2LNQ D 1 40 UNP P05067 A4_HUMAN 672 711 DBREF 2LNQ E 1 40 UNP P05067 A4_HUMAN 672 711 DBREF 2LNQ F 1 40 UNP P05067 A4_HUMAN 672 711 DBREF 2LNQ G 1 40 UNP P05067 A4_HUMAN 672 711 DBREF 2LNQ H 1 40 UNP P05067 A4_HUMAN 672 711 SEQADV 2LNQ ASN A 23 UNP P05067 ASP 694 VARIANT SEQADV 2LNQ ASN B 23 UNP P05067 ASP 694 VARIANT SEQADV 2LNQ ASN C 23 UNP P05067 ASP 694 VARIANT SEQADV 2LNQ ASN D 23 UNP P05067 ASP 694 VARIANT SEQADV 2LNQ ASN E 23 UNP P05067 ASP 694 VARIANT SEQADV 2LNQ ASN F 23 UNP P05067 ASP 694 VARIANT SEQADV 2LNQ ASN G 23 UNP P05067 ASP 694 VARIANT SEQADV 2LNQ ASN H 23 UNP P05067 ASP 694 VARIANT SEQRES 1 A 40 ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL HIS SEQRES 2 A 40 HIS GLN LYS LEU VAL PHE PHE ALA GLU ASN VAL GLY SER SEQRES 3 A 40 ASN LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY VAL SEQRES 4 A 40 VAL SEQRES 1 B 40 ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL HIS SEQRES 2 B 40 HIS GLN LYS LEU VAL PHE PHE ALA GLU ASN VAL GLY SER SEQRES 3 B 40 ASN LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY VAL SEQRES 4 B 40 VAL SEQRES 1 C 40 ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL HIS SEQRES 2 C 40 HIS GLN LYS LEU VAL PHE PHE ALA GLU ASN VAL GLY SER SEQRES 3 C 40 ASN LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY VAL SEQRES 4 C 40 VAL SEQRES 1 D 40 ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL HIS SEQRES 2 D 40 HIS GLN LYS LEU VAL PHE PHE ALA GLU ASN VAL GLY SER SEQRES 3 D 40 ASN LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY VAL SEQRES 4 D 40 VAL SEQRES 1 E 40 ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL HIS SEQRES 2 E 40 HIS GLN LYS LEU VAL PHE PHE ALA GLU ASN VAL GLY SER SEQRES 3 E 40 ASN LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY VAL SEQRES 4 E 40 VAL SEQRES 1 F 40 ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL HIS SEQRES 2 F 40 HIS GLN LYS LEU VAL PHE PHE ALA GLU ASN VAL GLY SER SEQRES 3 F 40 ASN LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY VAL SEQRES 4 F 40 VAL SEQRES 1 G 40 ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL HIS SEQRES 2 G 40 HIS GLN LYS LEU VAL PHE PHE ALA GLU ASN VAL GLY SER SEQRES 3 G 40 ASN LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY VAL SEQRES 4 G 40 VAL SEQRES 1 H 40 ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL HIS SEQRES 2 H 40 HIS GLN LYS LEU VAL PHE PHE ALA GLU ASN VAL GLY SER SEQRES 3 H 40 ASN LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY VAL SEQRES 4 H 40 VAL SHEET 1 A 8 LYS A 16 ALA A 21 0 SHEET 2 A 8 LEU B 17 GLU B 22 -1 O GLU B 22 N LYS A 16 SHEET 3 A 8 LYS C 16 GLU C 22 -1 O LEU C 17 N ALA B 21 SHEET 4 A 8 LYS D 16 GLU D 22 -1 O LYS D 16 N GLU C 22 SHEET 5 A 8 LYS E 16 GLU E 22 -1 O LEU E 17 N ALA D 21 SHEET 6 A 8 LYS F 16 GLU F 22 -1 O LYS F 16 N GLU E 22 SHEET 7 A 8 LEU G 17 GLU G 22 -1 O PHE G 19 N PHE F 19 SHEET 8 A 8 LYS H 16 ALA H 21 -1 O VAL H 18 N PHE G 20 SHEET 1 B 8 ILE A 31 MET A 35 0 SHEET 2 B 8 ALA B 30 VAL B 36 -1 O ILE B 31 N MET A 35 SHEET 3 B 8 ALA C 30 VAL C 36 -1 O ILE C 32 N LEU B 34 SHEET 4 B 8 ALA D 30 MET D 35 -1 O MET D 35 N ILE C 31 SHEET 5 B 8 ILE E 31 VAL E 36 -1 O ILE E 32 N LEU D 34 SHEET 6 B 8 ILE F 31 MET F 35 -1 O MET F 35 N ILE E 31 SHEET 7 B 8 ILE G 31 VAL G 36 -1 O ILE G 32 N LEU F 34 SHEET 8 B 8 ALA H 30 MET H 35 -1 O ILE H 31 N MET G 35 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000