PDB Short entry for 2LOZ HEADER HYDROLASE/HYDROLASE ACTIVATOR 29-JAN-12 2LOZ TITLE THE NOVEL BINDING MODE OF DLC1 AND TENSIN2 PTB DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TENSIN-LIKE C1 DOMAIN-CONTAINING PHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PTB DOMAIN, UNP RESIDUES 1263-1409; COMPND 5 SYNONYM: C1 DOMAIN-CONTAINING PHOSPHATASE AND TENSIN HOMOLOG, C1-TEN, COMPND 6 TENSIN-2; COMPND 7 EC: 3.1.3.-; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: RHO GTPASE-ACTIVATING PROTEIN 7; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: UNP RESIDUES 811-824; COMPND 13 SYNONYM: DELETED IN LIVER CANCER 1 PROTEIN, DLC-1, HP PROTEIN, RHO- COMPND 14 TYPE GTPASE-ACTIVATING PROTEIN 7, START DOMAIN-CONTAINING PROTEIN 12, COMPND 15 STARD12, STAR-RELATED LIPID TRANSFER PROTEIN 12; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TENC1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: DLC1; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_VECTOR: PET KEYWDS PTB, DLC1, HYDROLASE-HYDROLASE ACTIVATOR COMPLEX EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR C.LIU,L.CHEN,G.ZHU REVDAT 3 14-JUN-23 2LOZ 1 REMARK REVDAT 2 01-JAN-20 2LOZ 1 JRNL REMARK REVDAT 1 06-JUN-12 2LOZ 0 JRNL AUTH L.CHEN,C.LIU,F.C.KO,N.XU,I.O.NG,J.W.YAM,G.ZHU JRNL TITL SOLUTION STRUCTURE OF THE PHOSPHOTYROSINE BINDING (PTB) JRNL TITL 2 DOMAIN OF HUMAN TENSIN2 PROTEIN IN COMPLEX WITH DELETED IN JRNL TITL 3 LIVER CANCER 1 (DLC1) PEPTIDE REVEALS A NOVEL PEPTIDE JRNL TITL 4 BINDING MODE. JRNL REF J.BIOL.CHEM. V. 287 26104 2012 JRNL REFN ESSN 1083-351X JRNL PMID 22645138 JRNL DOI 10.1074/JBC.M112.360206 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMRJ, CNS, HADDOCK REMARK 3 AUTHORS : VARIAN (VNMRJ), BRUNGER, ADAMS, CLORE, GROS, REMARK 3 NILGES AND READ (CNS), ALEXANDRE BONVIN (HADDOCK) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LOZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000102652. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6-0.8 MM [U-100% 13C; U-100% REMARK 210 15N] TENSIN2-1, 1.2-1.4 MM DLC1- REMARK 210 2, 100 MM POTASSIUM PHOSPHATE-3, REMARK 210 100 MM POTASSIUM CHLORIDE-4, 1 REMARK 210 MM EDTA-5, 90% H2O/10% D2O; 1.2- REMARK 210 1.4 MM TENSIN2-6, 0.6-0.8 MM [U- REMARK 210 100% 13C; U-100% 15N] DLC1-7, REMARK 210 100 MM POTASSIUM PHOSPHATE-8, REMARK 210 100 MM POTASSIUM CHLORIDE-9, 1 REMARK 210 MM EDTA-10, 90% H2O/10% D2O; 0.6- REMARK 210 0.8 MM [U-100% 13C] TENSIN2-11, REMARK 210 1.2-1.4 MM DLC1-12, 100 MM REMARK 210 POTASSIUM PHOSPHATE-13, 100 MM REMARK 210 POTASSIUM CHLORIDE-14, 1 MM EDTA- REMARK 210 15, 100% D2O; 1.2-1.4 MM TENSIN2- REMARK 210 16, 0.6-0.8 MM [U-100% 13C] DLC1- REMARK 210 17, 100 MM POTASSIUM PHOSPHATE- REMARK 210 18, 100 MM POTASSIUM CHLORIDE-19, REMARK 210 1 MM EDTA-20, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D HCCH-TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY; 3D HCCH- REMARK 210 COSY; 3D13C/15N FILTERED-13C REMARK 210 EDITED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 750 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPARKY, CYANA, REMARK 210 PROCHECKNMR, CNS REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HA TYR A 1280 HD1 PHE A 1384 1.26 REMARK 500 HB3 HIS A 1337 H TYR A 1338 1.34 REMARK 500 OD1 ASP A 1390 H3 GLU B 367 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A1281 -73.11 -120.90 REMARK 500 1 SER A1306 70.85 58.37 REMARK 500 1 PRO A1309 -75.66 -80.71 REMARK 500 1 LEU A1332 -64.84 -92.88 REMARK 500 1 PHE A1333 102.20 170.01 REMARK 500 1 ARG A1335 -62.00 -168.89 REMARK 500 1 HIS A1337 -124.77 -130.92 REMARK 500 1 ASP A1349 149.48 179.07 REMARK 500 1 ASP A1388 88.82 65.13 REMARK 500 1 PHE B 374 -57.54 -179.44 REMARK 500 1 PRO B 375 -154.11 -86.82 REMARK 500 1 ALA B 377 75.34 57.32 REMARK 500 1 THR B 379 79.92 -158.61 REMARK 500 2 CYS A1276 -156.64 -117.00 REMARK 500 2 THR A1286 24.71 -140.19 REMARK 500 2 PHE A1333 -163.24 -167.24 REMARK 500 2 ASP A1349 143.38 179.11 REMARK 500 2 ASP A1352 54.72 73.17 REMARK 500 2 ALA A1385 -137.49 38.30 REMARK 500 2 ASP A1388 139.25 -171.01 REMARK 500 2 PRO A1389 -70.49 -31.60 REMARK 500 2 PRO B 371 73.56 -69.08 REMARK 500 2 PHE B 374 163.91 70.83 REMARK 500 2 PRO B 375 -77.12 -45.18 REMARK 500 2 LYS B 376 -167.28 -165.79 REMARK 500 2 LEU B 378 -65.35 -93.74 REMARK 500 2 THR B 379 144.35 70.71 REMARK 500 3 LEU A1332 -60.65 -99.74 REMARK 500 3 ASP A1349 138.89 176.80 REMARK 500 3 ASP A1352 71.64 67.75 REMARK 500 3 LEU A1387 -147.65 -104.05 REMARK 500 3 PRO A1389 -150.74 -97.55 REMARK 500 3 PHE B 374 -178.59 71.24 REMARK 500 3 PRO B 375 -142.05 -60.84 REMARK 500 4 ALA A1274 91.55 -67.58 REMARK 500 4 LEU A1281 -72.65 -126.61 REMARK 500 4 GLU A1287 -83.01 44.46 REMARK 500 4 CYS A1305 -63.35 -100.94 REMARK 500 4 SER A1306 71.67 61.26 REMARK 500 4 PRO A1309 -71.08 -57.27 REMARK 500 4 LEU A1332 -63.64 -99.32 REMARK 500 4 PHE A1333 -0.93 150.41 REMARK 500 4 ARG A1336 139.74 -20.66 REMARK 500 4 HIS A1337 -111.77 -88.61 REMARK 500 4 ASP A1349 135.79 178.87 REMARK 500 4 ASP A1352 63.69 65.90 REMARK 500 4 GLU A1378 -158.36 -99.61 REMARK 500 4 LEU A1387 -149.71 -95.56 REMARK 500 4 PRO A1389 -163.41 -102.73 REMARK 500 4 ASP B 368 -60.24 -162.09 REMARK 500 REMARK 500 THIS ENTRY HAS 140 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17364 RELATED DB: BMRB DBREF 2LOZ A 1263 1409 UNP Q63HR2 TENC1_HUMAN 1263 1409 DBREF 2LOZ B 367 380 UNP Q96QB1 RHG07_HUMAN 811 824 SEQRES 1 A 147 MET SER THR ALA ALA ASP LEU LEU ARG GLN GLY ALA ALA SEQRES 2 A 147 CYS SER VAL LEU TYR LEU THR SER VAL GLU THR GLU SER SEQRES 3 A 147 LEU THR GLY PRO GLN ALA VAL ALA ARG ALA SER SER ALA SEQRES 4 A 147 ALA LEU SER CYS SER PRO ARG PRO THR PRO ALA VAL VAL SEQRES 5 A 147 HIS PHE LYS VAL SER ALA GLN GLY ILE THR LEU THR ASP SEQRES 6 A 147 ASN GLN ARG LYS LEU PHE PHE ARG ARG HIS TYR PRO VAL SEQRES 7 A 147 ASN SER ILE THR PHE SER SER THR ASP PRO GLN ASP ARG SEQRES 8 A 147 ARG TRP THR ASN PRO ASP GLY THR THR SER LYS ILE PHE SEQRES 9 A 147 GLY PHE VAL ALA LYS LYS PRO GLY SER PRO TRP GLU ASN SEQRES 10 A 147 VAL CYS HIS LEU PHE ALA GLU LEU ASP PRO ASP GLN PRO SEQRES 11 A 147 ALA GLY ALA ILE VAL THR PHE ILE THR LYS VAL LEU LEU SEQRES 12 A 147 GLY GLN ARG LYS SEQRES 1 B 14 GLU ASP HIS LYS PRO GLY THR PHE PRO LYS ALA LEU THR SEQRES 2 B 14 ASN HELIX 1 1 ALA A 1266 ARG A 1271 1 6 HELIX 2 2 THR A 1290 CYS A 1305 1 16 HELIX 3 3 PRO A 1392 LEU A 1405 1 14 SHEET 1 A 7 TYR A1338 PRO A1339 0 SHEET 2 A 7 GLY A1322 THR A1326 -1 N ILE A1323 O TYR A1338 SHEET 3 A 7 ALA A1312 SER A1319 -1 N LYS A1317 O THR A1324 SHEET 4 A 7 ALA A1275 GLU A1285 -1 N TYR A1280 O ALA A1312 SHEET 5 A 7 SER A1375 ALA A1385 -1 O CYS A1381 N VAL A1284 SHEET 6 A 7 THR A1362 LYS A1372 -1 N PHE A1366 O PHE A1384 SHEET 7 A 7 ILE A1343 SER A1347 -1 N PHE A1345 O VAL A1369 SHEET 1 B 7 TYR A1338 PRO A1339 0 SHEET 2 B 7 GLY A1322 THR A1326 -1 N ILE A1323 O TYR A1338 SHEET 3 B 7 ALA A1312 SER A1319 -1 N LYS A1317 O THR A1324 SHEET 4 B 7 ALA A1275 GLU A1285 -1 N TYR A1280 O ALA A1312 SHEET 5 B 7 SER A1375 ALA A1385 -1 O CYS A1381 N VAL A1284 SHEET 6 B 7 THR A1362 LYS A1372 -1 N PHE A1366 O PHE A1384 SHEET 7 B 7 ARG A1354 THR A1356 -1 N TRP A1355 O SER A1363 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000