PDB Short entry for 2LR6 HEADER RNA BINDING PROTEIN 26-MAR-12 2LR6 TITLE NMR STRUCTURE OF A LINE-1 TYPE TRANSPOSASE DOMAIN-CONTAINING PROTEIN 1 TITLE 2 (L1TD1) FROM HOMO SAPIENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: LINE-1 TYPE TRANSPOSASE DOMAIN-CONTAINING PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 235-321; COMPND 5 SYNONYM: ES CELL-ASSOCIATED PROTEIN 11; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: L1TD1, ECAT11; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PSPEEDET KEYWDS L1TD1, PARTNERSHIP FOR STEM CELL BIOLOGY, JOINT CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, JCSG, RNA BINDING PROTEIN, PSI-BIOLOGY, STEMCELL EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.SERRANO,M.GERALT,B.MOHANTY,K.WUTHRICH,JOINT CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (JCSG),PARTNERSHIP FOR STEM CELL BIOLOGY,PARTNERSHIP FOR AUTHOR 3 STEM CELL BIOLOGY (STEMCELL) REVDAT 3 14-JUN-23 2LR6 1 REMARK SEQADV REVDAT 2 21-OCT-15 2LR6 1 AUTHOR JRNL REVDAT 1 04-JUL-12 2LR6 0 JRNL AUTH P.SERRANO,M.GERALT,B.MOHANTY,K.WUTHRICH JRNL TITL NMR STRUCTURE OF A LINE-1 TYPE TRANSPOSASE DOMAIN-CONTAINING JRNL TITL 2 PROTEIN 1 (L1TD1) FROM HOMO SAPIENS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LR6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000102730. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.185 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-98% 13C; U-98% 15N] REMARK 210 PROTEIN, 5 MM SODIUM AZIDE, 50 REMARK 210 MM SODIUM CHLORIDE, 25 MM SODIUM REMARK 210 PHOSPHATE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC; APSY 5D- REMARK 210 HACACONH; APSY 5D-CBCACONH; ASPY REMARK 210 4D-HACANH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, TOPSPIN, UNIO, CARA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB1 ALA A 50 HD2 LYS B 142 1.34 REMARK 500 HZ2 LYS A 77 OE1 GLU A 88 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 3 -113.26 -143.58 REMARK 500 1 ALA A 14 94.11 -69.55 REMARK 500 1 ASP A 15 -16.48 78.57 REMARK 500 1 TRP A 27 -151.62 -121.70 REMARK 500 1 PHE A 31 28.92 44.82 REMARK 500 1 GLU A 40 79.40 54.24 REMARK 500 1 PHE A 43 -30.71 177.24 REMARK 500 1 TRP B 127 -153.30 -123.04 REMARK 500 1 PHE B 131 21.99 47.75 REMARK 500 1 PHE B 143 22.36 -169.34 REMARK 500 1 LEU B 149 92.73 -67.49 REMARK 500 1 GLN B 186 -149.00 -113.94 REMARK 500 1 LYS B 187 96.43 70.27 REMARK 500 2 ALA A 14 -53.84 70.58 REMARK 500 2 ASP A 15 48.50 -78.59 REMARK 500 2 GLN A 26 92.94 40.99 REMARK 500 2 VAL A 30 -59.29 -120.95 REMARK 500 2 GLU A 40 73.93 57.32 REMARK 500 2 PHE A 43 31.34 -157.21 REMARK 500 2 GLU A 46 23.78 -76.57 REMARK 500 2 PRO A 85 91.02 -46.57 REMARK 500 2 ALA B 113 4.15 -68.61 REMARK 500 2 ALA B 114 -74.08 68.96 REMARK 500 2 LEU B 116 8.73 59.51 REMARK 500 2 LYS B 125 -60.19 -128.77 REMARK 500 2 VAL B 130 -44.44 -134.74 REMARK 500 2 GLU B 140 74.62 52.50 REMARK 500 2 PHE B 143 50.37 -141.31 REMARK 500 2 GLU B 146 44.67 -86.34 REMARK 500 2 CYS B 153 -131.61 -88.85 REMARK 500 2 ASP B 154 35.98 -74.06 REMARK 500 2 PRO B 185 96.47 -45.04 REMARK 500 3 LYS A 25 21.20 -168.07 REMARK 500 3 GLU A 40 71.17 56.98 REMARK 500 3 PHE A 43 -40.89 172.93 REMARK 500 3 LYS B 125 32.20 -162.68 REMARK 500 3 ASP B 138 70.11 52.54 REMARK 500 3 PHE B 143 -32.72 179.24 REMARK 500 3 LYS B 187 80.87 54.77 REMARK 500 4 LEU A 16 53.34 -119.70 REMARK 500 4 LYS A 25 67.72 -115.13 REMARK 500 4 TRP A 27 -156.13 -99.31 REMARK 500 4 SER A 28 6.34 56.69 REMARK 500 4 GLU A 40 82.66 60.31 REMARK 500 4 PHE A 43 84.53 -162.33 REMARK 500 4 GLU A 46 23.30 -144.88 REMARK 500 4 SER B 124 122.71 -170.96 REMARK 500 4 GLU B 140 78.07 55.69 REMARK 500 4 PHE B 143 82.07 -167.79 REMARK 500 4 LEU B 144 40.80 -90.37 REMARK 500 REMARK 500 THIS ENTRY HAS 326 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18349 RELATED DB: BMRB REMARK 900 RELATED ID: JCSG-421449 RELATED DB: TARGETTRACK DBREF 2LR6 A 2 88 UNP Q5T7N2 LITD1_HUMAN 235 321 DBREF 2LR6 B 102 188 UNP Q5T7N2 LITD1_HUMAN 235 321 SEQADV 2LR6 GLY A 1 UNP Q5T7N2 EXPRESSION TAG SEQADV 2LR6 ALA A 13 UNP Q5T7N2 VAL 246 VARIANT SEQADV 2LR6 MET A 76 UNP Q5T7N2 VAL 309 VARIANT SEQADV 2LR6 GLY B 101 UNP Q5T7N2 EXPRESSION TAG SEQADV 2LR6 ALA B 113 UNP Q5T7N2 VAL 246 VARIANT SEQADV 2LR6 MET B 176 UNP Q5T7N2 VAL 309 VARIANT SEQRES 1 A 88 GLY VAL LEU MET ASP GLU GLY ALA VAL LEU THR LEU ALA SEQRES 2 A 88 ALA ASP LEU SER SER ALA THR LEU ASP ILE SER LYS GLN SEQRES 3 A 88 TRP SER ASN VAL PHE ASN ILE LEU ARG GLU ASN ASP PHE SEQRES 4 A 88 GLU PRO LYS PHE LEU CYS GLU VAL LYS LEU ALA PHE LYS SEQRES 5 A 88 CYS ASP GLY GLU ILE LYS THR PHE SER ASP LEU GLN SER SEQRES 6 A 88 LEU ARG LYS PHE ALA SER GLN LYS SER SER MET LYS GLU SEQRES 7 A 88 LEU LEU LYS ASP VAL LEU PRO GLN LYS GLU SEQRES 1 B 88 GLY VAL LEU MET ASP GLU GLY ALA VAL LEU THR LEU ALA SEQRES 2 B 88 ALA ASP LEU SER SER ALA THR LEU ASP ILE SER LYS GLN SEQRES 3 B 88 TRP SER ASN VAL PHE ASN ILE LEU ARG GLU ASN ASP PHE SEQRES 4 B 88 GLU PRO LYS PHE LEU CYS GLU VAL LYS LEU ALA PHE LYS SEQRES 5 B 88 CYS ASP GLY GLU ILE LYS THR PHE SER ASP LEU GLN SER SEQRES 6 B 88 LEU ARG LYS PHE ALA SER GLN LYS SER SER MET LYS GLU SEQRES 7 B 88 LEU LEU LYS ASP VAL LEU PRO GLN LYS GLU HELIX 1 1 PHE A 31 ASN A 37 1 7 HELIX 2 2 ASP A 62 SER A 71 1 10 HELIX 3 3 LYS A 73 LYS A 81 1 9 HELIX 4 4 PHE B 131 ASN B 137 1 7 HELIX 5 5 ASP B 162 LYS B 173 1 12 HELIX 6 6 SER B 175 VAL B 183 5 9 SHEET 1 A 2 LEU A 49 CYS A 53 0 SHEET 2 A 2 GLU A 56 PHE A 60 -1 O GLU A 56 N CYS A 53 SHEET 1 B 2 LEU B 149 CYS B 153 0 SHEET 2 B 2 GLU B 156 PHE B 160 -1 O LYS B 158 N PHE B 151 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000