PDB Short entry for 2LSR HEADER STRUCTURAL PROTEIN/CELL ADHESION 04-MAY-12 2LSR TITLE SOLUTION STRUCTURE OF HARMONIN N TERMINAL DOMAIN IN COMPLEX WITH A TITLE 2 EXON68 ENCODED PEPTIDE OF CADHERIN23 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HARMONIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ANTIGEN NY-CO-38/NY-CO-37, AUTOIMMUNE ENTEROPATHY-RELATED COMPND 5 ANTIGEN AIE-75, PROTEIN PDZ-73, RENAL CARCINOMA ANTIGEN NY-REN-3, COMPND 6 USHER SYNDROME TYPE-1C PROTEIN; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PEPTIDE FROM CADHERIN-23; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: EXON68 ENCODED PEPTIDE; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AIE75, USH1C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET32A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: CDH23, USH1D; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 20 EXPRESSION_SYSTEM_VECTOR: PET32A KEYWDS PROTEIN COMPLEX, USHER SYNDROME, STRUCTURAL PROTEIN-CELL ADHESION KEYWDS 2 COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 MDLTYP MINIMIZED AVERAGE AUTHOR L.PAN,L.WU,C.ZHANG,M.ZHANG REVDAT 3 14-JUN-23 2LSR 1 DBREF REVDAT 2 25-DEC-19 2LSR 1 JRNL SEQADV REVDAT 1 15-AUG-12 2LSR 0 JRNL AUTH L.WU,L.PAN,C.ZHANG,M.ZHANG JRNL TITL LARGE PROTEIN ASSEMBLIES FORMED BY MULTIVALENT INTERACTIONS JRNL TITL 2 BETWEEN CADHERIN23 AND HARMONIN SUGGEST A STABLE ANCHORAGE JRNL TITL 3 STRUCTURE AT THE TIP LINK OF STEREOCILIA. JRNL REF J.BIOL.CHEM. V. 287 33460 2012 JRNL REFN ESSN 1083-351X JRNL PMID 22879593 JRNL DOI 10.1074/JBC.M112.378505 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG, REMARK 3 KUSZEWSKI,NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LSR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000102787. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6 MM [U-99% 13C; U-99% 15N] REMARK 210 PROTEIN_1-1, 0.6 MM [U-99% 13C; REMARK 210 U-99% 15N] PROTEIN_2-2, 100 MM REMARK 210 POTASSIUM PHOSPHATE-3, 1 MM DTT- REMARK 210 4, 1 MM EDTA-5, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY ALIPHATIC; 3D REMARK 210 CBCA(CO)NH; 3D HNCACB; 2D 1H-1H REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : PIPP REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 64 -33.79 -33.80 REMARK 500 1 PRO A 79 74.24 -69.51 REMARK 500 1 SER B 99 83.56 56.29 REMARK 500 1 LYS B 112 -76.84 -78.91 REMARK 500 2 ILE A 50 28.06 -143.15 REMARK 500 2 PRO A 64 -32.39 -36.60 REMARK 500 2 PRO A 67 165.75 -47.84 REMARK 500 3 ASP A 20 -53.14 82.76 REMARK 500 3 PRO A 64 -32.64 -36.90 REMARK 500 3 PRO A 67 165.60 -49.60 REMARK 500 4 ASP A 2 -46.42 -141.61 REMARK 500 4 ILE A 50 29.08 -142.33 REMARK 500 4 PRO A 64 -33.04 -36.14 REMARK 500 5 PRO A 64 -32.91 -35.59 REMARK 500 5 LYS B 112 -73.86 -72.09 REMARK 500 6 ASP A 2 139.26 -178.37 REMARK 500 6 ARG A 3 -54.20 69.93 REMARK 500 6 ASP A 20 -55.83 78.55 REMARK 500 6 ILE A 50 28.68 -144.79 REMARK 500 6 PRO A 64 -37.14 -38.24 REMARK 500 6 SER B 99 -172.98 59.08 REMARK 500 6 LEU B 100 -58.14 69.69 REMARK 500 6 LYS B 112 -76.94 -75.16 REMARK 500 7 ARG A 3 -41.32 80.38 REMARK 500 7 ILE A 50 29.13 -142.52 REMARK 500 7 LYS B 112 -78.60 -85.94 REMARK 500 8 THR A 78 107.25 -52.54 REMARK 500 8 SER B 99 -78.01 -173.37 REMARK 500 8 LYS B 112 -76.45 -84.97 REMARK 500 9 ASP A 2 -39.47 -178.36 REMARK 500 9 ASP A 20 -61.61 73.80 REMARK 500 9 ILE A 50 29.64 -140.40 REMARK 500 9 LEU B 100 -57.57 68.06 REMARK 500 9 LYS B 112 -73.85 -70.49 REMARK 500 10 ASP A 2 29.94 -147.05 REMARK 500 10 PRO A 57 -29.17 -39.13 REMARK 500 10 PRO A 64 -33.62 -34.55 REMARK 500 10 ILE A 66 128.89 -38.74 REMARK 500 10 PRO A 79 107.48 -57.60 REMARK 500 10 LYS B 112 -77.82 -78.50 REMARK 500 11 ILE A 50 29.55 -140.20 REMARK 500 11 PRO A 64 -32.12 -38.69 REMARK 500 11 SER B 99 90.56 63.24 REMARK 500 12 ILE A 50 29.83 -140.15 REMARK 500 12 PRO A 64 -36.32 -33.97 REMARK 500 13 ASP A 2 110.44 61.12 REMARK 500 13 ARG A 3 -43.87 -160.96 REMARK 500 13 MET A 37 32.41 75.45 REMARK 500 13 PRO A 57 -29.19 -39.04 REMARK 500 13 PRO A 64 -33.70 -36.16 REMARK 500 REMARK 500 THIS ENTRY HAS 75 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2KBQ RELATED DB: PDB REMARK 900 RELATED ID: 2KBR RELATED DB: PDB REMARK 900 RELATED ID: 18441 RELATED DB: BMRB DBREF 2LSR A 1 80 UNP Q9Y6N9 USH1C_HUMAN 1 80 DBREF 2LSR B 98 113 UNP F6U049 F6U049_HUMAN 3215 3230 SEQADV 2LSR GLU B 103 UNP F6U049 VAL 3220 ENGINEERED MUTATION SEQRES 1 A 80 MET ASP ARG LYS VAL ALA ARG GLU PHE ARG HIS LYS VAL SEQRES 2 A 80 ASP PHE LEU ILE GLU ASN ASP ALA GLU LYS ASP TYR LEU SEQRES 3 A 80 TYR ASP VAL LEU ARG MET TYR HIS GLN THR MET ASP VAL SEQRES 4 A 80 ALA VAL LEU VAL GLY ASP LEU LYS LEU VAL ILE ASN GLU SEQRES 5 A 80 PRO SER ARG LEU PRO LEU PHE ASP ALA ILE ARG PRO LEU SEQRES 6 A 80 ILE PRO LEU LYS HIS GLN VAL GLU TYR ASP GLN LEU THR SEQRES 7 A 80 PRO ARG SEQRES 1 B 16 GLY SER LEU LEU LYS GLU VAL LEU GLU ASP TYR LEU ARG SEQRES 2 B 16 LEU LYS LYS HELIX 1 1 ASP A 2 ILE A 17 1 16 HELIX 2 2 ASP A 20 MET A 37 1 18 HELIX 3 3 ASP A 38 ASN A 51 1 14 HELIX 4 4 ARG A 55 ARG A 63 1 9 HELIX 5 5 PRO A 64 ILE A 66 5 3 HELIX 6 6 PRO A 67 THR A 78 1 12 HELIX 7 7 SER B 99 LYS B 113 1 15 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000