PDB Short entry for 2LTC HEADER UNKNOWN FUNCTION 16-MAY-12 2LTC TITLE FAS1-4, R555W COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSFORMING GROWTH FACTOR-BETA-INDUCED PROTEIN IG-H3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FAS1 4 DOMAIN; COMPND 5 SYNONYM: BETA IG-H3, KERATO-EPITHELIN, RGD-CONTAINING COLLAGEN- COMPND 6 ASSOCIATED PROTEIN, RGD-CAP; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TGFBI, BIGH3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET SUMO KEYWDS UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR J.UNDERHAUG,N.NIELSEN,K.RUNAGER REVDAT 4 27-NOV-13 2LTC 1 JRNL REVDAT 3 30-OCT-13 2LTC 1 JRNL REVDAT 2 23-OCT-13 2LTC 1 JRNL REVDAT 1 21-AUG-13 2LTC 0 JRNL AUTH J.UNDERHAUG,H.KOLDS,K.RUNAGER,J.T.NIELSEN,C.S.SRENSEN, JRNL AUTH 2 T.KRISTENSEN,D.E.OTZEN,H.KARRING,A.MALMENDAL,B.SCHITT, JRNL AUTH 3 J.J.ENGHILD,N.C.NIELSEN JRNL TITL MUTATION IN TRANSFORMING GROWTH FACTOR BETA INDUCED PROTEIN JRNL TITL 2 ASSOCIATED WITH GRANULAR CORNEAL DYSTROPHY TYPE 1 REDUCES JRNL TITL 3 THE PROTEOLYTIC SUSCEPTIBILITY THROUGH LOCAL STRUCTURAL JRNL TITL 4 STABILIZATION. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1834 2812 2013 JRNL REFN ISSN 0006-3002 JRNL PMID 24129074 JRNL DOI 10.1016/J.BBAPAP.2013.10.008 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LTC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAY-12. REMARK 100 THE RCSB ID CODE IS RCSB102808. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.2 MM [U-99% 13C; U-99% 15N] REMARK 210 FAS1, R555W, 50 MM SODIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 0.5 MM DSS, 0.5 % REMARK 210 SODIUM AZIDE, 50 MM ARGININE, 50 REMARK 210 MM GLUTAMATE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D CBCA(CO)NH; 3D REMARK 210 CBCANH; 3D HNCO; 3D HNCA; 3D REMARK 210 HN(CA)CO; 3D HN(CO)CA; 3D HCCH- REMARK 210 TOCSY; 3D 15N-TOCSY-HSQC; 3D 13C- REMARK 210 NOESY-HSQC; 3D 15N-NOESY-HSQC; 2D REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, NMRPIPE, SPARKY, TALOS, REMARK 210 REDCAT, ARIA, CNSSOLVE REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG12 VAL A 508 HG23 VAL A 625 1.24 REMARK 500 HZ PHE A 515 HG23 VAL A 627 1.27 REMARK 500 OD2 ASP A 561 HZ3 LYS A 563 1.57 REMARK 500 O LEU A 589 H LEU A 597 1.58 REMARK 500 HG1 THR A 538 O GLU A 576 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 586 109.27 -160.32 REMARK 500 1 ASP A 595 -156.38 -94.02 REMARK 500 1 ASN A 604 -5.56 69.81 REMARK 500 1 LYS A 610 -0.12 76.56 REMARK 500 1 ASP A 617 59.81 76.70 REMARK 500 2 ASN A 604 -14.95 74.11 REMARK 500 2 LYS A 610 -24.76 86.92 REMARK 500 2 ASP A 617 39.02 75.76 REMARK 500 3 MET A 502 103.10 69.41 REMARK 500 3 ALA A 585 -53.18 -121.03 REMARK 500 3 LEU A 586 107.75 -162.35 REMARK 500 3 LYS A 610 -13.10 83.18 REMARK 500 3 ASP A 617 42.79 76.11 REMARK 500 4 ILE A 583 109.80 -59.99 REMARK 500 4 LEU A 586 116.62 -164.36 REMARK 500 4 ASN A 604 -14.89 68.28 REMARK 500 5 MET A 502 -78.02 -134.68 REMARK 500 5 ALA A 585 -85.01 71.49 REMARK 500 5 LEU A 586 117.56 -167.55 REMARK 500 5 LYS A 610 -14.19 83.31 REMARK 500 5 ASP A 617 38.28 74.88 REMARK 500 6 ASP A 595 -156.51 -117.43 REMARK 500 6 ASN A 604 -0.39 70.44 REMARK 500 7 ILE A 583 99.79 -62.52 REMARK 500 7 ALA A 585 -82.25 -98.82 REMARK 500 7 ASN A 604 -2.55 75.58 REMARK 500 7 ASP A 617 45.50 74.89 REMARK 500 8 MET A 502 30.35 -177.26 REMARK 500 8 ALA A 585 -82.91 62.51 REMARK 500 8 LEU A 586 117.24 -163.27 REMARK 500 8 LYS A 610 -12.48 80.10 REMARK 500 8 GLU A 615 89.08 -150.36 REMARK 500 9 MET A 502 -30.09 75.72 REMARK 500 9 ALA A 585 -71.60 -113.46 REMARK 500 9 ASP A 595 -164.87 -110.66 REMARK 500 9 LYS A 610 -2.39 77.02 REMARK 500 9 ASP A 617 31.46 71.64 REMARK 500 10 ASP A 595 -158.88 -88.52 REMARK 500 10 ASN A 604 -2.17 73.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18467 RELATED DB: BMRB REMARK 900 RELATED ID: 2LTB RELATED DB: PDB DBREF 2LTC A 502 634 UNP Q15582 BGH3_HUMAN 502 634 SEQADV 2LTC ALA A 500 UNP Q15582 EXPRESSION TAG SEQADV 2LTC GLY A 501 UNP Q15582 EXPRESSION TAG SEQADV 2LTC TRP A 555 UNP Q15582 ARG 555 ENGINEERED MUTATION SEQADV 2LTC ALA A 634 UNP Q15582 PRO 634 ENGINEERED MUTATION SEQRES 1 A 135 ALA GLY MET GLY THR VAL MET ASP VAL LEU LYS GLY ASP SEQRES 2 A 135 ASN ARG PHE SER MET LEU VAL ALA ALA ILE GLN SER ALA SEQRES 3 A 135 GLY LEU THR GLU THR LEU ASN ARG GLU GLY VAL TYR THR SEQRES 4 A 135 VAL PHE ALA PRO THR ASN GLU ALA PHE ARG ALA LEU PRO SEQRES 5 A 135 PRO ARG GLU TRP SER ARG LEU LEU GLY ASP ALA LYS GLU SEQRES 6 A 135 LEU ALA ASN ILE LEU LYS TYR HIS ILE GLY ASP GLU ILE SEQRES 7 A 135 LEU VAL SER GLY GLY ILE GLY ALA LEU VAL ARG LEU LYS SEQRES 8 A 135 SER LEU GLN GLY ASP LYS LEU GLU VAL SER LEU LYS ASN SEQRES 9 A 135 ASN VAL VAL SER VAL ASN LYS GLU PRO VAL ALA GLU PRO SEQRES 10 A 135 ASP ILE MET ALA THR ASN GLY VAL VAL HIS VAL ILE THR SEQRES 11 A 135 ASN VAL LEU GLN ALA HELIX 1 1 THR A 504 GLY A 511 1 8 HELIX 2 2 PHE A 515 GLY A 526 1 12 HELIX 3 3 LEU A 527 ARG A 533 1 7 HELIX 4 4 PRO A 551 LEU A 559 1 9 HELIX 5 5 ASP A 561 LYS A 570 1 10 HELIX 6 6 VAL A 579 ILE A 583 5 5 SHEET 1 A 7 ILE A 573 GLY A 574 0 SHEET 2 A 7 TYR A 537 PRO A 542 -1 N THR A 538 O GLY A 574 SHEET 3 A 7 GLY A 623 ILE A 628 1 O ILE A 628 N ALA A 541 SHEET 4 A 7 GLU A 611 MET A 619 -1 N ALA A 614 O VAL A 627 SHEET 5 A 7 VAL A 605 VAL A 608 -1 N VAL A 608 O GLU A 611 SHEET 6 A 7 LYS A 596 LYS A 602 -1 N SER A 600 O SER A 607 SHEET 7 A 7 LEU A 586 LYS A 590 -1 N LEU A 589 O LEU A 597 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000