PDB Short entry for 2LTP HEADER TRANSCRIPTION REGULATOR 30-MAY-12 2LTP TITLE SOLUTION STRUCTURE OF THE SANT2 DOMAIN OF THE HUMAN NUCLEAR RECEPTOR TITLE 2 COREPRESSOR 2 (NCOR2), NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TITLE 3 (NESG) TARGET ID HR4636E COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR RECEPTOR COREPRESSOR 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SANT 2 DOMAIN RESIDUES 615-685; COMPND 5 SYNONYM: N-COR2, CTG REPEAT PROTEIN 26, SMAP270, SILENCING MEDIATOR COMPND 6 OF RETINOIC ACID AND THYROID HORMONE RECEPTOR, SMRT, T3 RECEPTOR- COMPND 7 ASSOCIATING FACTOR, TRAC, THYROID-, RETINOIC-ACID-RECEPTOR-ASSOCIATED COMPND 8 COREPRESSOR; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NCOR2, CTG26; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28-MHL KEYWDS SMRT, TRAC, SGC, STRUCTURAL GENOMICS CONSORTIUM, NESG, NORTHEAST KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, TRANSCRIPTION REGULATOR, PSI-BIOLOGY EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.MONTECCHIO,A.LEMAK,A.YEE,C.XU,M.GARCIA,S.HOULISTON,M.BELLANDA, AUTHOR 2 J.MIN,G.T.MONTELIONE,C.ARROWSMITH,NORTHEAST STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (NESG),STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 2 14-JUN-23 2LTP 1 REMARK SEQADV REVDAT 1 20-JUN-12 2LTP 0 JRNL AUTH M.MONTECCHIO,A.LEMAK,A.YEE,C.XU,M.GARCIA,S.HOULISTON, JRNL AUTH 2 M.BELLANDA,J.MIN,G.T.MONTELIONE,C.ARROWSMITH JRNL TITL SOLUTION STRUCTURE OF THE SANT2 DOMAIN OF THE HUMAN NUCLEAR JRNL TITL 2 RECEPTOR COREPRESSOR 2 (NCOR2). JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CNS REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LTP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000102820. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 200 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-13C; U-15N] PROTEIN 1, REMARK 210 25 MM SODIUM PHOSPHATE, 200 MM REMARK 210 NACL, 0.01 MM ZNSO4, 10 MM DTT, REMARK 210 1 MM BENZAMIDINE, 0.01 % NAN3, REMARK 210 95 % H2O, 5 % D2O, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCO; 3D HNCA; 3D HBHA(CO)NH; REMARK 210 3D 1H-15N NOESY; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TALOS, SPARKY, MDDGUI, FMCGUI, REMARK 210 CYANA, PSVS REMARK 210 METHOD USED : RESTRAINED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 ARG A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 30 -74.28 -149.90 REMARK 500 1 TYR A 42 35.76 -94.06 REMARK 500 1 LYS A 43 90.03 -68.89 REMARK 500 1 GLN A 46 -66.10 -120.32 REMARK 500 1 ARG A 67 38.93 -99.49 REMARK 500 2 GLU A 15 -63.78 -106.94 REMARK 500 2 ASN A 19 94.43 -66.74 REMARK 500 2 THR A 31 151.31 -49.07 REMARK 500 2 ASN A 41 -65.85 -98.09 REMARK 500 2 TYR A 42 -76.73 -73.68 REMARK 500 2 GLN A 46 -41.05 77.59 REMARK 500 3 GLU A 15 -63.30 -97.14 REMARK 500 3 ASN A 19 92.38 -69.63 REMARK 500 3 LYS A 30 -91.27 -143.38 REMARK 500 3 LYS A 44 86.70 -66.67 REMARK 500 3 ASN A 47 -49.67 -138.03 REMARK 500 3 LYS A 69 82.75 -151.62 REMARK 500 4 LYS A 30 -79.64 -122.40 REMARK 500 4 PHE A 40 -60.62 -95.75 REMARK 500 4 LYS A 44 80.20 -58.36 REMARK 500 5 LYS A 30 -169.01 -125.25 REMARK 500 5 GLN A 46 99.62 -161.34 REMARK 500 5 ASN A 47 -91.76 -153.86 REMARK 500 5 LYS A 69 76.74 60.54 REMARK 500 6 GLU A 15 -62.72 -93.50 REMARK 500 6 LYS A 30 -78.23 -133.68 REMARK 500 6 GLN A 46 96.54 46.17 REMARK 500 7 ARG A 45 98.90 -58.64 REMARK 500 7 GLN A 46 -36.46 71.34 REMARK 500 8 ARG A 18 32.32 -85.06 REMARK 500 8 LYS A 30 -69.14 -136.01 REMARK 500 8 ASN A 47 46.14 -82.47 REMARK 500 9 ARG A 18 50.00 -82.73 REMARK 500 9 LYS A 30 -147.53 -140.29 REMARK 500 9 ARG A 45 79.11 64.90 REMARK 500 9 ARG A 67 -65.11 -109.33 REMARK 500 10 ARG A 18 35.43 -86.06 REMARK 500 10 LYS A 30 -80.91 -139.04 REMARK 500 10 GLN A 46 85.86 59.88 REMARK 500 10 LYS A 70 97.46 56.49 REMARK 500 11 ASN A 19 96.26 -67.93 REMARK 500 11 TYR A 42 -10.13 66.84 REMARK 500 11 LYS A 69 52.76 -107.57 REMARK 500 12 ASN A 41 -52.33 78.31 REMARK 500 12 LYS A 44 46.19 -90.42 REMARK 500 12 GLN A 46 20.09 43.97 REMARK 500 12 LYS A 70 79.08 64.84 REMARK 500 13 GLU A 15 -63.03 -90.81 REMARK 500 13 LYS A 30 -166.42 -120.99 REMARK 500 13 LYS A 44 163.32 179.76 REMARK 500 REMARK 500 THIS ENTRY HAS 77 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18492 RELATED DB: BMRB REMARK 900 RELATED ID: NESG-HR4636 RELATED DB: TARGETTRACK DBREF 2LTP A 1 71 UNP Q9Y618 NCOR2_HUMAN 615 685 SEQADV 2LTP MET A -17 UNP Q9Y618 EXPRESSION TAG SEQADV 2LTP HIS A -16 UNP Q9Y618 EXPRESSION TAG SEQADV 2LTP HIS A -15 UNP Q9Y618 EXPRESSION TAG SEQADV 2LTP HIS A -14 UNP Q9Y618 EXPRESSION TAG SEQADV 2LTP HIS A -13 UNP Q9Y618 EXPRESSION TAG SEQADV 2LTP HIS A -12 UNP Q9Y618 EXPRESSION TAG SEQADV 2LTP HIS A -11 UNP Q9Y618 EXPRESSION TAG SEQADV 2LTP SER A -10 UNP Q9Y618 EXPRESSION TAG SEQADV 2LTP SER A -9 UNP Q9Y618 EXPRESSION TAG SEQADV 2LTP GLY A -8 UNP Q9Y618 EXPRESSION TAG SEQADV 2LTP ARG A -7 UNP Q9Y618 EXPRESSION TAG SEQADV 2LTP GLU A -6 UNP Q9Y618 EXPRESSION TAG SEQADV 2LTP ASN A -5 UNP Q9Y618 EXPRESSION TAG SEQADV 2LTP LEU A -4 UNP Q9Y618 EXPRESSION TAG SEQADV 2LTP TYR A -3 UNP Q9Y618 EXPRESSION TAG SEQADV 2LTP PHE A -2 UNP Q9Y618 EXPRESSION TAG SEQADV 2LTP GLN A -1 UNP Q9Y618 EXPRESSION TAG SEQADV 2LTP GLY A 0 UNP Q9Y618 EXPRESSION TAG SEQADV 2LTP GLY A 7 UNP Q9Y618 GLU 621 CONFLICT SEQRES 1 A 89 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 89 LEU TYR PHE GLN GLY TRP THR GLU GLU GLU MET GLY THR SEQRES 3 A 89 ALA LYS LYS GLY LEU LEU GLU HIS GLY ARG ASN TRP SER SEQRES 4 A 89 ALA ILE ALA ARG MET VAL GLY SER LYS THR VAL SER GLN SEQRES 5 A 89 CYS LYS ASN PHE TYR PHE ASN TYR LYS LYS ARG GLN ASN SEQRES 6 A 89 LEU ASP GLU ILE LEU GLN GLN HIS LYS LEU LYS MET GLU SEQRES 7 A 89 LYS GLU ARG ASN ALA ARG ARG LYS LYS LYS LYS HELIX 1 1 THR A 2 HIS A 16 1 15 HELIX 2 2 ASN A 19 VAL A 27 1 9 HELIX 3 3 THR A 31 TYR A 42 1 12 HELIX 4 4 GLN A 46 ARG A 66 1 21 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000