PDB Short entry for 2LTU HEADER TRANSFERASE 01-JUN-12 2LTU TITLE SOLUTION STRUCTURE OF AUTOINHIBITORY DOMAIN OF HUMAN AMP-ACTIVATED TITLE 2 PROTEIN KINASE CATALYTIC SUBUNIT COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-AMP-ACTIVATED PROTEIN KINASE CATALYTIC SUBUNIT ALPHA-2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AMPK SUBUNIT ALPHA-2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX KEYWDS AMPK, AID, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.XIA,J.HU REVDAT 2 14-JUN-23 2LTU 1 REMARK SEQADV REVDAT 1 12-JUN-13 2LTU 0 JRNL AUTH B.XIA,J.HU JRNL TITL SOLUTION STRUCTURE OF AUTOINHIBITORY DOMAIN OF HUMAN JRNL TITL 2 AMP-ACTIVATED PROTEIN KINASE CATALYTIC SUBUNIT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, AMBER REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), CASE, DARDEN, CHEATHAM, III, SIMMERLING, REMARK 3 WANG, DUKE, LUO, ... AND KOLLMAN (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LTU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000102825. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.2 MM [U-100% 13C; U-100% 15N] REMARK 210 AID PROTEIN, 50 MM SODIUM REMARK 210 PHOSPHATE, 10 % [U-100% 2H] D2O, REMARK 210 90 % H2O, 1 MM EDTA, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HN(CO)CA; 3D HNCO; 3D HCACO; 3D REMARK 210 H(CCO)NH; 3D HCCH-TOCSY; 3D REMARK 210 HBHA(CO)NH; 3D 1H-15N TOCSY; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, TOPSPIN, NMRDRAW, REMARK 210 CYANA, DYANA, PROCHECKNMR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 54 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 2 ARG A 54 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 3 ARG A 54 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 5 ARG A 55 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 8 ARG A 54 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 10 ARG A 54 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 13 ARG A 54 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 14 ARG A 54 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 16 ARG A 54 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 24 71.60 71.66 REMARK 500 1 ILE A 56 -60.59 -91.51 REMARK 500 2 SER A 5 128.97 177.49 REMARK 500 2 VAL A 10 88.40 78.58 REMARK 500 2 CYS A 25 -151.72 -102.67 REMARK 500 3 SER A 36 -5.67 -144.16 REMARK 500 4 VAL A 10 85.75 69.41 REMARK 500 4 CYS A 25 -157.24 -102.93 REMARK 500 4 PRO A 39 -5.26 -57.43 REMARK 500 4 MET A 57 31.56 -93.89 REMARK 500 5 VAL A 10 31.33 -83.48 REMARK 500 5 PRO A 39 5.53 -54.77 REMARK 500 7 CYS A 25 -148.87 -102.72 REMARK 500 8 VAL A 10 24.43 -77.81 REMARK 500 8 SER A 36 -20.11 -142.75 REMARK 500 8 MET A 57 -29.62 112.83 REMARK 500 9 MET A 57 53.53 82.78 REMARK 500 9 ASN A 58 135.18 81.30 REMARK 500 10 MET A 4 -43.41 72.47 REMARK 500 10 GLU A 24 71.51 71.69 REMARK 500 10 CYS A 25 -146.58 -145.51 REMARK 500 11 VAL A 10 93.63 74.04 REMARK 500 11 GLU A 24 70.97 67.54 REMARK 500 12 GLU A 24 74.63 70.81 REMARK 500 12 PRO A 39 -9.74 -57.79 REMARK 500 13 GLU A 24 70.19 71.67 REMARK 500 13 MET A 57 -23.83 95.93 REMARK 500 13 ASN A 58 -51.46 73.57 REMARK 500 15 MET A 4 108.67 -52.80 REMARK 500 15 SER A 5 -26.43 -142.04 REMARK 500 15 SER A 36 -11.68 -141.83 REMARK 500 15 MET A 57 128.19 -175.61 REMARK 500 16 CYS A 25 -163.40 -102.72 REMARK 500 17 MET A 4 -19.56 59.13 REMARK 500 17 VAL A 10 115.42 77.32 REMARK 500 17 GLU A 24 77.29 66.51 REMARK 500 17 CYS A 25 -148.61 -149.23 REMARK 500 17 PRO A 39 20.93 -59.85 REMARK 500 18 ASN A 58 -30.00 66.70 REMARK 500 19 SER A 5 27.70 -78.27 REMARK 500 19 MET A 57 141.53 -178.91 REMARK 500 20 MET A 57 -39.20 113.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18497 RELATED DB: BMRB DBREF 2LTU A 5 62 UNP P54646 AAPK2_HUMAN 282 339 SEQADV 2LTU GLY A 1 UNP P54646 EXPRESSION TAG SEQADV 2LTU PRO A 2 UNP P54646 EXPRESSION TAG SEQADV 2LTU HIS A 3 UNP P54646 EXPRESSION TAG SEQADV 2LTU MET A 4 UNP P54646 EXPRESSION TAG SEQRES 1 A 62 GLY PRO HIS MET SER TYR ASP ALA ASN VAL ILE ASP ASP SEQRES 2 A 62 GLU ALA VAL LYS GLU VAL CYS GLU LYS PHE GLU CYS THR SEQRES 3 A 62 GLU SER GLU VAL MET ASN SER LEU TYR SER GLY ASP PRO SEQRES 4 A 62 GLN ASP GLN LEU ALA VAL ALA TYR HIS LEU ILE ILE ASP SEQRES 5 A 62 ASN ARG ARG ILE MET ASN GLN ALA SER GLU HELIX 1 1 ASP A 7 ILE A 11 5 5 HELIX 2 2 ASP A 12 GLU A 24 1 13 HELIX 3 3 THR A 26 SER A 36 1 11 HELIX 4 4 ASP A 41 ILE A 56 1 16 HELIX 5 5 ILE A 56 SER A 61 1 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000