PDB Short entry for 2LV7 HEADER METAL BINDING PROTEIN 29-JUN-12 2LV7 TITLE SOLUTION STRUCTURE OF CA2+-BOUND CABP7 N-TERMINAL DOMAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALCIUM-BINDING PROTEIN 7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL RESIDUES 1-100; COMPND 5 SYNONYM: CABP7, CALNEURON II, CALNEURON-2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CABP7, CALN2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PE-SUMO VECTOR, T7, KAN KEYWDS CALCIUM-BINDING PROTEIN, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.V.MCCUE,P.PATEL,A.P.HERBERT,L.LIAN,R.D.BURGOYNE,L.P.HAYNES REVDAT 3 14-JUN-23 2LV7 1 REMARK LINK REVDAT 2 21-NOV-12 2LV7 1 JRNL REVDAT 1 26-SEP-12 2LV7 0 JRNL AUTH H.V.MCCUE,P.PATEL,A.P.HERBERT,L.Y.LIAN,R.D.BURGOYNE, JRNL AUTH 2 L.P.HAYNES JRNL TITL SOLUTION NMR STRUCTURE OF THE CA2+-BOUND N-TERMINAL DOMAIN JRNL TITL 2 OF CABP7: A REGULATOR OF GOLGI TRAFFICKING. JRNL REF J.BIOL.CHEM. V. 287 38231 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22989873 JRNL DOI 10.1074/JBC.M112.402289 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CCPN_ANALYSIS, ARIA REMARK 3 AUTHORS : CCPN (CCPN_ANALYSIS), LINGE, O'DONOGHUE AND NILGES REMARK 3 (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LV7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000102874. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.2-1.0 MM [U-13C; U-15N] CABP7 REMARK 210 N-TERMINAL DOMAIN, 90% H2O/10% REMARK 210 D2O; 0.2-1.0 MM [U-15N] CABP7 N- REMARK 210 TERMINAL DOMAIN, 90% H2O/10% D2O; REMARK 210 0.4 MM [U-15N] CABP7 N-TERMINAL REMARK 210 DOMAIN, 100% D2O; 0.4 MM [U-15N] REMARK 210 CABP7 N-TERMINAL DOMAIN, 20 MG/ REMARK 210 ML PF1 PHAGE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCO; 3D HNCA; REMARK 210 3D HNCACB; 3D HBHA(CO)NH; 3D REMARK 210 HN(CO)CA; 3D HCCH-TOCSY; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY; 3D REMARK 210 1H-13C NOESY AROMATIC; 2D 1H-13C REMARK 210 HSQC AROMATIC; 3D HN(COCA)CB REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPN_ANALYSIS, CYANA, ARIA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 6 113.09 62.94 REMARK 500 1 THR A 7 -68.63 -123.45 REMARK 500 1 ALA A 8 118.27 -172.96 REMARK 500 1 LEU A 10 -156.20 -87.87 REMARK 500 1 MET A 11 106.60 66.44 REMARK 500 1 ARG A 13 -58.44 -166.72 REMARK 500 1 TYR A 16 -82.67 -63.05 REMARK 500 1 THR A 17 -3.99 -171.41 REMARK 500 1 PRO A 19 -60.29 -90.11 REMARK 500 1 ASN A 20 59.21 -141.86 REMARK 500 1 SER A 23 -60.75 -106.72 REMARK 500 1 GLN A 25 -92.37 60.20 REMARK 500 1 ASP A 29 119.88 -175.01 REMARK 500 1 GLU A 32 -11.20 -48.89 REMARK 500 1 GLU A 40 -29.32 -38.76 REMARK 500 1 ALA A 41 -82.18 -70.92 REMARK 500 2 THR A 7 127.71 -175.25 REMARK 500 2 LEU A 10 96.30 56.32 REMARK 500 2 ARG A 13 117.60 -166.47 REMARK 500 2 ASP A 33 -70.32 -45.51 REMARK 500 2 GLU A 40 -31.85 -38.38 REMARK 500 2 ALA A 41 -83.68 -67.91 REMARK 500 2 ASP A 82 83.24 -68.65 REMARK 500 3 VAL A 6 -71.41 -94.66 REMARK 500 3 PRO A 19 -30.47 -39.90 REMARK 500 3 ASN A 20 47.38 -94.03 REMARK 500 3 GLU A 40 -31.62 -38.96 REMARK 500 3 ALA A 41 -81.76 -66.95 REMARK 500 3 SER A 54 -178.17 -66.09 REMARK 500 4 PRO A 2 87.98 -65.50 REMARK 500 4 ALA A 9 -70.34 -58.88 REMARK 500 4 LEU A 10 92.05 48.22 REMARK 500 4 MET A 11 95.50 -64.70 REMARK 500 4 THR A 17 88.32 -156.11 REMARK 500 4 ASN A 20 84.47 -170.66 REMARK 500 4 GLN A 25 131.99 64.42 REMARK 500 4 ARG A 39 -70.62 -68.00 REMARK 500 4 GLU A 40 -31.01 -39.06 REMARK 500 4 ALA A 41 -81.74 -64.52 REMARK 500 4 SER A 54 -178.57 -69.45 REMARK 500 4 ASP A 82 82.85 -69.43 REMARK 500 5 THR A 7 -60.08 -97.57 REMARK 500 5 ALA A 9 -70.21 -87.32 REMARK 500 5 THR A 17 46.79 35.76 REMARK 500 5 ASN A 20 -86.86 -49.98 REMARK 500 5 GLN A 25 -109.50 57.25 REMARK 500 5 PRO A 27 38.85 -84.13 REMARK 500 5 VAL A 28 108.28 -54.80 REMARK 500 5 ASP A 29 84.32 -175.35 REMARK 500 5 ARG A 39 -70.83 -68.27 REMARK 500 REMARK 500 THIS ENTRY HAS 185 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 46 OD1 REMARK 620 2 ASP A 48 OD2 101.5 REMARK 620 3 ASN A 50 OD1 82.3 125.2 REMARK 620 4 PHE A 52 O 71.1 168.9 63.0 REMARK 620 5 GLU A 57 OE1 59.9 71.8 141.8 97.2 REMARK 620 6 GLU A 57 OE2 105.2 73.5 158.7 100.0 47.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 82 OD1 REMARK 620 2 ASP A 84 OD1 78.1 REMARK 620 3 ASP A 86 OD1 65.5 71.4 REMARK 620 4 GLN A 88 O 80.6 134.8 63.5 REMARK 620 5 GLU A 93 OE2 145.4 69.8 114.0 132.0 REMARK 620 6 GLU A 93 OE1 108.5 70.7 142.0 154.4 48.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18557 RELATED DB: BMRB DBREF 2LV7 A 1 100 UNP Q86V35 CABP7_HUMAN 1 100 SEQRES 1 A 100 MET PRO PHE HIS PRO VAL THR ALA ALA LEU MET TYR ARG SEQRES 2 A 100 GLY ILE TYR THR VAL PRO ASN LEU LEU SER GLU GLN ARG SEQRES 3 A 100 PRO VAL ASP ILE PRO GLU ASP GLU LEU GLU GLU ILE ARG SEQRES 4 A 100 GLU ALA PHE LYS VAL PHE ASP ARG ASP GLY ASN GLY PHE SEQRES 5 A 100 ILE SER LYS GLN GLU LEU GLY THR ALA MET ARG SER LEU SEQRES 6 A 100 GLY TYR MET PRO ASN GLU VAL GLU LEU GLU VAL ILE ILE SEQRES 7 A 100 GLN ARG LEU ASP MET ASP GLY ASP GLY GLN VAL ASP PHE SEQRES 8 A 100 GLU GLU PHE VAL THR LEU LEU GLY PRO HET CA A 201 1 HET CA A 202 1 HETNAM CA CALCIUM ION FORMUL 2 CA 2(CA 2+) HELIX 1 1 PRO A 31 ASP A 33 5 3 HELIX 2 2 GLU A 34 PHE A 45 1 12 HELIX 3 3 SER A 54 LEU A 65 1 12 HELIX 4 4 GLU A 73 ASP A 82 1 10 HELIX 5 5 ASP A 90 LEU A 98 1 9 LINK OD1 ASP A 46 CA CA A 201 1555 1555 2.35 LINK OD2 ASP A 48 CA CA A 201 1555 1555 2.81 LINK OD1 ASN A 50 CA CA A 201 1555 1555 2.82 LINK O PHE A 52 CA CA A 201 1555 1555 2.64 LINK OE1 GLU A 57 CA CA A 201 1555 1555 2.83 LINK OE2 GLU A 57 CA CA A 201 1555 1555 2.59 LINK OD1 ASP A 82 CA CA A 202 1555 1555 2.48 LINK OD1 ASP A 84 CA CA A 202 1555 1555 2.65 LINK OD1 ASP A 86 CA CA A 202 1555 1555 2.52 LINK O GLN A 88 CA CA A 202 1555 1555 2.62 LINK OE2 GLU A 93 CA CA A 202 1555 1555 2.47 LINK OE1 GLU A 93 CA CA A 202 1555 1555 2.80 SITE 1 AC1 6 ASP A 46 ASP A 48 ASN A 50 PHE A 52 SITE 2 AC1 6 GLU A 57 GLN A 88 SITE 1 AC2 6 ASP A 82 ASP A 84 ASP A 86 GLN A 88 SITE 2 AC2 6 ASP A 90 GLU A 93 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000