PDB Short entry for 2LVR HEADER TRANSCRIPTION 10-JUL-12 2LVR TITLE SOLUTION STRUCTURE OF MIZ-1 ZINC FINGER 8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 17; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C2H2-TYPE 8 ZINC FINGER RESIDUES 500-581; COMPND 5 SYNONYM: MYC-INTERACTING ZINC FINGER PROTEIN 1, MIZ-1, ZINC FINGER COMPND 6 PROTEIN 151, ZINC FINGER PROTEIN 60; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MIZ1, ZBTB17, ZHX1, ZNF151, ZNF60; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 STAR (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-3A KEYWDS C2H2 ZINC FINGER, CLASSICAL ZINC FINGER, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.BEDARD,L.MALTAIS,M.BEAULIEU,D.BERNARD,P.LAVIGNE REVDAT 5 14-JUN-23 2LVR 1 REMARK SEQADV LINK REVDAT 4 27-APR-16 2LVR 1 ATOM REMARK SEQRES REVDAT 3 14-NOV-12 2LVR 1 JRNL REVDAT 2 03-OCT-12 2LVR 1 JRNL REVDAT 1 25-JUL-12 2LVR 0 JRNL AUTH M.BEDARD,L.MALTAIS,M.E.BEAULIEU,J.BILODEAU,D.BERNARD, JRNL AUTH 2 P.LAVIGNE JRNL TITL NMR STRUCTURE NOTE: SOLUTION STRUCTURE OF HUMAN MIZ-1 ZINC JRNL TITL 2 FINGERS 8 TO 10. JRNL REF J.BIOMOL.NMR V. 54 317 2012 JRNL REFN ISSN 0925-2738 JRNL PMID 22986688 JRNL DOI 10.1007/S10858-012-9670-1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.2, ARIA 2.2, CNS 1.21 REMARK 3 AUTHORS : NILGES, RIEPING, HABECK, BARDIAUX, BERNARD AND REMARK 3 MALLIAVIN (ARIA), NILGES, RIEPING, HABECK, REMARK 3 BARDIAUX, BERNARD AND MALLIAVIN (ARIA), BRUNGER, REMARK 3 ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LVR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000102892. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.05 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.75 - 1.00 MM [U-13C; U-15N] REMARK 210 MIZ8, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HNCO; 3D C(CO)NH; 3D H(CCO)NH; REMARK 210 3D HCCH-TOCSY; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC; 3D HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.21, CCPNMR ANALYSIS 2.1, REMARK 210 DANGLE 1.1, NMRPIPE 7.4 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 300 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 PRO A 31 REMARK 465 CYS A 32 REMARK 465 GLN A 33 REMARK 465 CYS A 34 REMARK 465 VAL A 35 REMARK 465 MET A 36 REMARK 465 CYS A 37 REMARK 465 GLY A 38 REMARK 465 LYS A 39 REMARK 465 ALA A 40 REMARK 465 PHE A 41 REMARK 465 THR A 42 REMARK 465 GLN A 43 REMARK 465 ALA A 44 REMARK 465 SER A 45 REMARK 465 SER A 46 REMARK 465 LEU A 47 REMARK 465 ILE A 48 REMARK 465 ALA A 49 REMARK 465 HIS A 50 REMARK 465 VAL A 51 REMARK 465 ARG A 52 REMARK 465 GLN A 53 REMARK 465 HIS A 54 REMARK 465 THR A 55 REMARK 465 GLY A 56 REMARK 465 GLU A 57 REMARK 465 LYS A 58 REMARK 465 PRO A 59 REMARK 465 TYR A 60 REMARK 465 VAL A 61 REMARK 465 CYS A 62 REMARK 465 GLU A 63 REMARK 465 ARG A 64 REMARK 465 CYS A 65 REMARK 465 GLY A 66 REMARK 465 LYS A 67 REMARK 465 ARG A 68 REMARK 465 PHE A 69 REMARK 465 VAL A 70 REMARK 465 GLN A 71 REMARK 465 SER A 72 REMARK 465 SER A 73 REMARK 465 GLN A 74 REMARK 465 LEU A 75 REMARK 465 ALA A 76 REMARK 465 ASN A 77 REMARK 465 HIS A 78 REMARK 465 ILE A 79 REMARK 465 ARG A 80 REMARK 465 HIS A 81 REMARK 465 HIS A 82 REMARK 465 ASP A 83 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 3 PRO A 3 173.63 -59.89 REMARK 500 4 GLN A 10 79.65 65.07 REMARK 500 5 GLN A 10 79.36 67.64 REMARK 500 5 THR A 27 49.57 -85.49 REMARK 500 6 GLN A 10 67.77 69.80 REMARK 500 7 PRO A 3 178.19 -59.85 REMARK 500 7 GLN A 10 60.66 67.01 REMARK 500 8 THR A 27 49.47 -83.18 REMARK 500 10 LYS A 2 118.84 179.71 REMARK 500 11 GLN A 10 81.40 60.38 REMARK 500 13 LYS A 2 -53.20 -156.83 REMARK 500 13 THR A 27 52.77 -92.19 REMARK 500 15 GLN A 10 64.98 63.45 REMARK 500 16 THR A 27 49.85 -84.28 REMARK 500 18 GLN A 10 79.40 67.99 REMARK 500 18 THR A 27 34.72 -93.14 REMARK 500 19 LYS A 2 71.43 55.80 REMARK 500 20 THR A 27 46.22 -84.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 4 TYR A 4 0.06 SIDE CHAIN REMARK 500 5 TYR A 4 0.05 SIDE CHAIN REMARK 500 16 TYR A 4 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 6 SG REMARK 620 2 CYS A 9 SG 103.0 REMARK 620 3 HIS A 22 NE2 91.8 100.5 REMARK 620 4 HIS A 26 NE2 104.1 109.0 141.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18586 RELATED DB: BMRB REMARK 900 RELATED ID: 2LVT RELATED DB: PDB REMARK 900 RELATED ID: 2LVU RELATED DB: PDB DBREF 2LVR A 2 83 UNP Q13105 ZBT17_HUMAN 500 581 SEQADV 2LVR MET A 1 UNP Q13105 INITIATING METHIONINE SEQRES 1 A 83 MET LYS PRO TYR VAL CYS ILE HIS CYS GLN ARG GLN PHE SEQRES 2 A 83 ALA ASP PRO GLY ALA LEU GLN ARG HIS VAL ARG ILE HIS SEQRES 3 A 83 THR GLY GLU LYS PRO CYS GLN CYS VAL MET CYS GLY LYS SEQRES 4 A 83 ALA PHE THR GLN ALA SER SER LEU ILE ALA HIS VAL ARG SEQRES 5 A 83 GLN HIS THR GLY GLU LYS PRO TYR VAL CYS GLU ARG CYS SEQRES 6 A 83 GLY LYS ARG PHE VAL GLN SER SER GLN LEU ALA ASN HIS SEQRES 7 A 83 ILE ARG HIS HIS ASP HET ZN A 101 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 ASP A 15 GLY A 28 1 14 SHEET 1 A 2 TYR A 4 VAL A 5 0 SHEET 2 A 2 GLN A 12 PHE A 13 -1 O PHE A 13 N TYR A 4 LINK SG CYS A 6 ZN ZN A 101 1555 1555 2.31 LINK SG CYS A 9 ZN ZN A 101 1555 1555 2.30 LINK NE2 HIS A 22 ZN ZN A 101 1555 1555 2.15 LINK NE2 HIS A 26 ZN ZN A 101 1555 1555 2.00 SITE 1 AC1 4 CYS A 6 CYS A 9 HIS A 22 HIS A 26 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000