PDB Short entry for 2M04 HEADER APOPTOSIS/PROTEIN BINDING 19-OCT-12 2M04 TITLE SOLUTION STRUCTURE OF BCL-XL IN COMPLEX WITH PUMA BH3 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BCL-2-LIKE PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BCL2-L-1, APOPTOSIS REGULATOR BCL-X; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BCL-2-BINDING COMPONENT 3; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: JFY-1, P53 UP-REGULATED MODULATOR OF APOPTOSIS; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BCL2-LIKE 1, BCL2L, BCL2L1, BCLX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS BCL-XL, PUMA, APOPTOSIS-PROTEIN BINDING COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.VIACAVA FOLLIS,G.ROYAPPA,R.W.KRIWACKI REVDAT 3 06-MAR-13 2M04 1 JRNL REVDAT 2 06-FEB-13 2M04 1 JRNL REVDAT 1 30-JAN-13 2M04 0 JRNL AUTH A.V.FOLLIS,J.E.CHIPUK,J.C.FISHER,M.K.YUN,C.R.GRACE,A.NOURSE, JRNL AUTH 2 K.BARAN,L.OU,L.MIN,S.W.WHITE,D.R.GREEN,R.W.KRIWACKI JRNL TITL PUMA BINDING INDUCES PARTIAL UNFOLDING WITHIN BCL-XL TO JRNL TITL 2 DISRUPT P53 BINDING AND PROMOTE APOPTOSIS. JRNL REF NAT.CHEM.BIOL. V. 9 163 2013 JRNL REFN ISSN 1552-4450 JRNL PMID 23340338 JRNL DOI 10.1038/NCHEMBIO.1166 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLM REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M04 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-OCT-12. REMARK 100 THE RCSB ID CODE IS RCSB103040. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.1 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.9 MM [U-100% 13C; U-100% 15N; REMARK 210 U-95% 2H; ILE,LEU,VAL C1H3] BCL- REMARK 210 XL, 0.9 MM PUMA BH3, 92% H2O/8% REMARK 210 D2O; 0.9 MM [U-100% 13C; U-100% REMARK 210 15N] BCL-XL, 0.9 MM PUMA BH3, 92% REMARK 210 H2O/8% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-1H TOCSY REMARK 210 14N EDITED; 2D 1H-1H NOESY 14N REMARK 210 EDITED; 2D 1H-13C HSQC; 3D HNCA; REMARK 210 3D HNCACB; 3D HNCO; 3D HN(CA)CO; REMARK 210 3D HCCH-TOCSY; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY ALIPHATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, CARA, CYANA REMARK 210 METHOD USED : TORSION ANGLE SIMULATED REMARK 210 ANNEALING, MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 212 REMARK 465 HIS A 213 REMARK 465 HIS A 214 REMARK 465 HIS A 215 REMARK 465 HIS A 216 REMARK 465 HIS A 217 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 14 OD1 ASP A 29 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 GLU A 92 CD GLU A 92 OE1 0.078 REMARK 500 1 GLU A 92 CD GLU A 92 OE2 -0.084 REMARK 500 3 ARG B 92 C ARG B 92 OXT 0.154 REMARK 500 4 GLU A 39 CD GLU A 39 OE1 -0.083 REMARK 500 4 GLU A 39 CD GLU A 39 OE2 0.076 REMARK 500 4 ARG B 92 C ARG B 92 O 0.124 REMARK 500 6 GLU A 96 CD GLU A 96 OE1 0.071 REMARK 500 6 GLU A 96 CD GLU A 96 OE2 -0.085 REMARK 500 7 GLU A 208 CD GLU A 208 OE2 -0.067 REMARK 500 8 GLU A 96 CD GLU A 96 OE1 0.110 REMARK 500 8 GLU A 96 CD GLU A 96 OE2 -0.101 REMARK 500 9 GLU A 44 CD GLU A 44 OE1 -0.080 REMARK 500 9 GLU A 44 CD GLU A 44 OE2 0.082 REMARK 500 9 GLU A 158 CD GLU A 158 OE1 -0.071 REMARK 500 9 GLU A 158 CD GLU A 158 OE2 0.067 REMARK 500 11 ASP B 85 CG ASP B 85 OD1 0.149 REMARK 500 11 ASP B 85 CG ASP B 85 OD2 -0.142 REMARK 500 12 GLU B 69 CD GLU B 69 OE1 -0.079 REMARK 500 12 GLU B 69 CD GLU B 69 OE2 0.079 REMARK 500 13 GLU A 98 CD GLU A 98 OE1 0.075 REMARK 500 13 GLU A 98 CD GLU A 98 OE2 -0.074 REMARK 500 17 GLU A 92 CD GLU A 92 OE1 -0.078 REMARK 500 17 GLU A 92 CD GLU A 92 OE2 0.079 REMARK 500 17 GLU A 96 CD GLU A 96 OE1 -0.090 REMARK 500 17 GLU A 96 CD GLU A 96 OE2 0.090 REMARK 500 18 GLU A 7 CD GLU A 7 OE1 -0.087 REMARK 500 18 GLU A 7 CD GLU A 7 OE2 0.086 REMARK 500 18 GLU A 202 CD GLU A 202 OE1 -0.085 REMARK 500 18 GLU A 202 CD GLU A 202 OE2 0.081 REMARK 500 19 GLU A 44 CD GLU A 44 OE1 0.101 REMARK 500 19 GLU A 44 CD GLU A 44 OE2 -0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ASP B 84 CB - CG - OD1 ANGL. DEV. = -6.1 DEGREES REMARK 500 1 ASP B 85 CB - CG - OD1 ANGL. DEV. = -6.0 DEGREES REMARK 500 3 ARG A 103 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 4 ARG B 92 CA - C - O ANGL. DEV. = -12.7 DEGREES REMARK 500 6 ASP B 84 CB - CG - OD1 ANGL. DEV. = -7.4 DEGREES REMARK 500 6 ASP B 84 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 7 ASP A 11 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 7 ASP B 84 CB - CG - OD1 ANGL. DEV. = -8.1 DEGREES REMARK 500 9 ASP B 84 CB - CG - OD1 ANGL. DEV. = -6.5 DEGREES REMARK 500 9 ASP B 84 CB - CG - OD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 10 ASP B 85 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 11 ARG B 80 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 11 ASP B 85 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 13 ASP B 84 CB - CG - OD1 ANGL. DEV. = -6.9 DEGREES REMARK 500 14 ASP A 11 CB - CG - OD1 ANGL. DEV. = -5.4 DEGREES REMARK 500 15 TYR B 90 CB - CG - CD1 ANGL. DEV. = -3.6 DEGREES REMARK 500 16 ASP A 133 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 17 ASP A 95 CB - CG - OD1 ANGL. DEV. = -5.6 DEGREES REMARK 500 17 ASP A 133 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 19 ASP B 84 CB - CG - OD1 ANGL. DEV. = -6.3 DEGREES REMARK 500 20 ASP B 84 CB - CG - OD1 ANGL. DEV. = -7.4 DEGREES REMARK 500 20 ASP B 84 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 20 ASP B 85 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A -1 87.27 -178.31 REMARK 500 1 ALA A 0 32.01 -155.78 REMARK 500 1 MET A 1 75.40 66.33 REMARK 500 1 GLN A 26 28.91 -175.20 REMARK 500 1 SER A 28 129.90 -179.49 REMARK 500 1 ASP A 29 -75.00 -174.09 REMARK 500 1 GLU A 31 -61.29 -167.59 REMARK 500 1 GLU A 32 -49.55 174.77 REMARK 500 1 ARG A 34 -53.58 -173.12 REMARK 500 1 THR A 41 -36.63 -169.98 REMARK 500 1 GLU A 42 -40.79 -161.85 REMARK 500 1 LEU A 99 93.24 62.67 REMARK 500 1 ARG A 102 60.35 -107.80 REMARK 500 1 ARG A 103 -57.59 -155.55 REMARK 500 1 ASP A 107 24.45 -167.17 REMARK 500 1 THR A 109 -37.36 -176.72 REMARK 500 1 GLN A 111 -78.93 57.94 REMARK 500 1 LEU A 112 99.26 56.38 REMARK 500 1 ILE A 114 149.82 -172.91 REMARK 500 1 ARG A 132 -72.63 -53.60 REMARK 500 1 VAL A 135 105.63 -52.45 REMARK 500 1 GLU A 158 22.37 -152.80 REMARK 500 1 MET A 159 -170.99 59.08 REMARK 500 1 HIS A 177 59.47 -164.13 REMARK 500 1 LEU A 178 -39.29 -157.86 REMARK 500 1 GLU A 202 18.84 -161.18 REMARK 500 1 GLU A 208 27.68 -142.54 REMARK 500 1 ARG A 209 -38.27 -171.83 REMARK 500 1 GLN B 89 65.87 61.78 REMARK 500 1 TYR B 90 -47.88 73.61 REMARK 500 2 SER A -1 -42.18 -155.34 REMARK 500 2 ALA A 0 -173.58 50.77 REMARK 500 2 MET A 1 -171.90 -67.87 REMARK 500 2 GLN A 26 61.72 65.46 REMARK 500 2 SER A 28 -70.77 72.27 REMARK 500 2 GLU A 32 -70.58 -101.68 REMARK 500 2 THR A 35 -58.30 77.71 REMARK 500 2 GLU A 36 39.23 -169.73 REMARK 500 2 THR A 41 -39.37 -151.89 REMARK 500 2 GLU A 42 -41.77 -164.14 REMARK 500 2 TYR A 101 -41.97 -152.53 REMARK 500 2 ARG A 103 99.33 -49.39 REMARK 500 2 SER A 106 -171.96 -55.63 REMARK 500 2 ASP A 107 50.47 70.68 REMARK 500 2 THR A 109 17.85 -155.13 REMARK 500 2 GLN A 111 -72.97 64.67 REMARK 500 2 LEU A 112 114.08 61.39 REMARK 500 2 THR A 115 -58.73 178.35 REMARK 500 2 GLU A 158 19.84 -153.72 REMARK 500 2 MET A 159 -168.36 56.04 REMARK 500 REMARK 500 THIS ENTRY HAS 669 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ASP A 11 0.07 SIDE CHAIN REMARK 500 1 GLU A 32 0.12 SIDE CHAIN REMARK 500 1 GLU A 39 0.08 SIDE CHAIN REMARK 500 1 ASP A 156 0.09 SIDE CHAIN REMARK 500 1 GLU A 179 0.09 SIDE CHAIN REMARK 500 1 GLU A 193 0.10 SIDE CHAIN REMARK 500 1 ASP B 84 0.11 SIDE CHAIN REMARK 500 1 ASP B 85 0.10 SIDE CHAIN REMARK 500 2 GLU A 42 0.08 SIDE CHAIN REMARK 500 2 GLU A 202 0.09 SIDE CHAIN REMARK 500 2 GLU A 208 0.08 SIDE CHAIN REMARK 500 2 ASP B 84 0.11 SIDE CHAIN REMARK 500 2 ASP B 85 0.10 SIDE CHAIN REMARK 500 3 GLU A 7 0.09 SIDE CHAIN REMARK 500 3 ASP A 29 0.09 SIDE CHAIN REMARK 500 3 ASP A 95 0.08 SIDE CHAIN REMARK 500 3 GLU A 98 0.07 SIDE CHAIN REMARK 500 3 GLU A 179 0.07 SIDE CHAIN REMARK 500 3 GLU A 193 0.08 SIDE CHAIN REMARK 500 3 GLU A 208 0.07 SIDE CHAIN REMARK 500 3 ASP B 84 0.09 SIDE CHAIN REMARK 500 4 ASP A 11 0.09 SIDE CHAIN REMARK 500 4 GLU A 32 0.10 SIDE CHAIN REMARK 500 4 GLU A 44 0.08 SIDE CHAIN REMARK 500 4 GLU A 92 0.07 SIDE CHAIN REMARK 500 4 ASP A 95 0.08 SIDE CHAIN REMARK 500 4 GLU A 96 0.10 SIDE CHAIN REMARK 500 4 ASP A 133 0.09 SIDE CHAIN REMARK 500 4 ASP A 189 0.09 SIDE CHAIN REMARK 500 4 GLU A 202 0.08 SIDE CHAIN REMARK 500 4 GLU B 74 0.09 SIDE CHAIN REMARK 500 4 ASP B 84 0.13 SIDE CHAIN REMARK 500 5 GLU A 31 0.10 SIDE CHAIN REMARK 500 5 ASP A 95 0.11 SIDE CHAIN REMARK 500 5 ASP A 133 0.10 SIDE CHAIN REMARK 500 5 ASP A 156 0.08 SIDE CHAIN REMARK 500 5 GLU A 158 0.08 SIDE CHAIN REMARK 500 5 GLU A 179 0.08 SIDE CHAIN REMARK 500 5 GLU A 193 0.10 SIDE CHAIN REMARK 500 5 ASP B 84 0.12 SIDE CHAIN REMARK 500 6 GLU A 7 0.08 SIDE CHAIN REMARK 500 6 ASP A 29 0.11 SIDE CHAIN REMARK 500 6 GLU A 31 0.11 SIDE CHAIN REMARK 500 6 GLU A 39 0.08 SIDE CHAIN REMARK 500 6 GLU A 98 0.10 SIDE CHAIN REMARK 500 6 GLU A 158 0.09 SIDE CHAIN REMARK 500 6 GLU A 202 0.08 SIDE CHAIN REMARK 500 6 GLU B 69 0.09 SIDE CHAIN REMARK 500 6 ASP B 84 0.15 SIDE CHAIN REMARK 500 6 ASP B 85 0.07 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 142 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 1 GLU A 7 -10.03 REMARK 500 1 GLU A 92 -10.12 REMARK 500 1 SER A 203 -12.46 REMARK 500 1 GLY A 206 -10.92 REMARK 500 1 MET B 82 -10.63 REMARK 500 2 SER A -1 -12.87 REMARK 500 2 ASP A 11 -10.59 REMARK 500 2 GLU A 202 -12.55 REMARK 500 2 GLY A 206 -11.77 REMARK 500 2 ASP B 85 -12.95 REMARK 500 3 ASP A 29 10.33 REMARK 500 4 MET A 1 -10.45 REMARK 500 4 GLU A 42 -12.22 REMARK 500 4 ASP A 107 10.03 REMARK 500 4 LYS A 157 -10.00 REMARK 500 4 GLU A 202 -11.48 REMARK 500 4 ARG A 204 10.23 REMARK 500 4 ARG B 81 10.89 REMARK 500 5 MET A 1 -11.72 REMARK 500 5 GLU A 42 -11.61 REMARK 500 5 GLU A 153 -10.11 REMARK 500 5 GLY A 186 10.21 REMARK 500 5 ASP B 85 -11.62 REMARK 500 6 GLN A 3 -11.40 REMARK 500 6 GLU A 7 -12.62 REMARK 500 6 ALA A 104 10.85 REMARK 500 6 ILE A 114 -10.50 REMARK 500 6 SER A 203 11.29 REMARK 500 6 ARG A 204 -12.79 REMARK 500 7 ALA A 201 -11.14 REMARK 500 7 MET B 82 -10.88 REMARK 500 8 GLU A 7 -10.84 REMARK 500 8 ASP A 11 -10.04 REMARK 500 8 ASP A 29 -14.04 REMARK 500 8 GLU A 42 -10.42 REMARK 500 8 ASN A 185 10.95 REMARK 500 8 GLU B 91 11.15 REMARK 500 9 ASP A 11 -10.99 REMARK 500 9 ARG A 132 -11.68 REMARK 500 9 TRP A 137 -12.68 REMARK 500 9 MET B 82 -14.69 REMARK 500 10 ASP A 11 -11.30 REMARK 500 10 GLU A 92 -13.41 REMARK 500 10 PHE A 105 10.16 REMARK 500 11 ASP A 11 -11.59 REMARK 500 11 TRP A 137 -12.40 REMARK 500 11 ASN A 175 -10.61 REMARK 500 11 ARG B 81 11.86 REMARK 500 12 GLN A 3 -10.47 REMARK 500 12 GLU A 7 -14.30 REMARK 500 REMARK 500 THIS ENTRY HAS 94 MAIN CHAIN PLANARITY DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2M03 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF BCL-XL DETERMINED WITH SELECTIVE REMARK 900 ISOTOPE LABELLING OF I,L,V SIDECHAINS REMARK 900 RELATED ID: 4HNJ RELATED DB: PDB REMARK 900 CRYSTALLOGRAPHIC STRUCTURE OF BCL-XL DOMAIN-SWAPPED DIMER REMARK 900 IN COMPLEX WITH PUMA BH3 PEPTIDE AT 2.9A RESOLUTION REMARK 900 RELATED ID: 18793 RELATED DB: BMRB DBREF 2M04 A 1 209 UNP Q07817 B2CL1_HUMAN 1 209 DBREF 2M04 B 68 92 UNP Q9BXH1 BBC3_HUMAN 130 154 SEQADV 2M04 MET A -2 UNP Q07817 EXPRESSION TAG SEQADV 2M04 SER A -1 UNP Q07817 EXPRESSION TAG SEQADV 2M04 ALA A 0 UNP Q07817 EXPRESSION TAG SEQADV 2M04 A UNP Q07817 MET 45 DELETION SEQADV 2M04 A UNP Q07817 GLU 46 DELETION SEQADV 2M04 A UNP Q07817 THR 47 DELETION SEQADV 2M04 A UNP Q07817 PRO 48 DELETION SEQADV 2M04 A UNP Q07817 SER 49 DELETION SEQADV 2M04 A UNP Q07817 ALA 50 DELETION SEQADV 2M04 A UNP Q07817 ILE 51 DELETION SEQADV 2M04 A UNP Q07817 ASN 52 DELETION SEQADV 2M04 A UNP Q07817 GLY 53 DELETION SEQADV 2M04 A UNP Q07817 ASN 54 DELETION SEQADV 2M04 A UNP Q07817 PRO 55 DELETION SEQADV 2M04 A UNP Q07817 SER 56 DELETION SEQADV 2M04 A UNP Q07817 TRP 57 DELETION SEQADV 2M04 A UNP Q07817 HIS 58 DELETION SEQADV 2M04 A UNP Q07817 LEU 59 DELETION SEQADV 2M04 A UNP Q07817 ALA 60 DELETION SEQADV 2M04 A UNP Q07817 ASP 61 DELETION SEQADV 2M04 A UNP Q07817 SER 62 DELETION SEQADV 2M04 A UNP Q07817 PRO 63 DELETION SEQADV 2M04 A UNP Q07817 ALA 64 DELETION SEQADV 2M04 A UNP Q07817 VAL 65 DELETION SEQADV 2M04 A UNP Q07817 ASN 66 DELETION SEQADV 2M04 A UNP Q07817 GLY 67 DELETION SEQADV 2M04 A UNP Q07817 ALA 68 DELETION SEQADV 2M04 A UNP Q07817 THR 69 DELETION SEQADV 2M04 A UNP Q07817 GLY 70 DELETION SEQADV 2M04 A UNP Q07817 HIS 71 DELETION SEQADV 2M04 A UNP Q07817 SER 72 DELETION SEQADV 2M04 A UNP Q07817 SER 73 DELETION SEQADV 2M04 A UNP Q07817 SER 74 DELETION SEQADV 2M04 A UNP Q07817 LEU 75 DELETION SEQADV 2M04 A UNP Q07817 ASP 76 DELETION SEQADV 2M04 A UNP Q07817 ALA 77 DELETION SEQADV 2M04 A UNP Q07817 ARG 78 DELETION SEQADV 2M04 A UNP Q07817 GLU 79 DELETION SEQADV 2M04 A UNP Q07817 VAL 80 DELETION SEQADV 2M04 A UNP Q07817 ILE 81 DELETION SEQADV 2M04 A UNP Q07817 PRO 82 DELETION SEQADV 2M04 A UNP Q07817 MET 83 DELETION SEQADV 2M04 A UNP Q07817 ALA 84 DELETION SEQADV 2M04 LEU A 210 UNP Q07817 EXPRESSION TAG SEQADV 2M04 GLU A 211 UNP Q07817 EXPRESSION TAG SEQADV 2M04 HIS A 212 UNP Q07817 EXPRESSION TAG SEQADV 2M04 HIS A 213 UNP Q07817 EXPRESSION TAG SEQADV 2M04 HIS A 214 UNP Q07817 EXPRESSION TAG SEQADV 2M04 HIS A 215 UNP Q07817 EXPRESSION TAG SEQADV 2M04 HIS A 216 UNP Q07817 EXPRESSION TAG SEQADV 2M04 HIS A 217 UNP Q07817 EXPRESSION TAG SEQRES 1 A 180 MET SER ALA MET SER GLN SER ASN ARG GLU LEU VAL VAL SEQRES 2 A 180 ASP PHE LEU SER TYR LYS LEU SER GLN LYS GLY TYR SER SEQRES 3 A 180 TRP SER GLN PHE SER ASP VAL GLU GLU ASN ARG THR GLU SEQRES 4 A 180 ALA PRO GLU GLY THR GLU SER GLU ALA VAL LYS GLN ALA SEQRES 5 A 180 LEU ARG GLU ALA GLY ASP GLU PHE GLU LEU ARG TYR ARG SEQRES 6 A 180 ARG ALA PHE SER ASP LEU THR SER GLN LEU HIS ILE THR SEQRES 7 A 180 PRO GLY THR ALA TYR GLN SER PHE GLU GLN VAL VAL ASN SEQRES 8 A 180 GLU LEU PHE ARG ASP GLY VAL ASN TRP GLY ARG ILE VAL SEQRES 9 A 180 ALA PHE PHE SER PHE GLY GLY ALA LEU CYS VAL GLU SER SEQRES 10 A 180 VAL ASP LYS GLU MET GLN VAL LEU VAL SER ARG ILE ALA SEQRES 11 A 180 ALA TRP MET ALA THR TYR LEU ASN ASP HIS LEU GLU PRO SEQRES 12 A 180 TRP ILE GLN GLU ASN GLY GLY TRP ASP THR PHE VAL GLU SEQRES 13 A 180 LEU TYR GLY ASN ASN ALA ALA ALA GLU SER ARG LYS GLY SEQRES 14 A 180 GLN GLU ARG LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 25 GLU GLU GLN TRP ALA ARG GLU ILE GLY ALA GLN LEU ARG SEQRES 2 B 25 ARG MET ALA ASP ASP LEU ASN ALA GLN TYR GLU ARG HELIX 1 1 SER A 2 GLN A 19 1 18 HELIX 2 2 GLU A 42 ASP A 95 1 14 HELIX 3 3 THR A 118 PHE A 131 1 14 HELIX 4 4 ASN A 136 MET A 159 1 24 HELIX 5 5 GLN A 160 LEU A 178 1 19 HELIX 6 6 LEU A 178 GLY A 186 1 9 HELIX 7 7 GLY A 187 ASN A 197 1 11 HELIX 8 8 TRP B 71 ASP B 84 1 14 HELIX 9 9 ASP B 85 GLN B 89 5 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000