PDB Short entry for 2M0C HEADER GENE REGULATION 24-OCT-12 2M0C TITLE SOLUTION NMR STRUCTURE OF HOMEOBOX DOMAIN OF HUMAN ALX4, NORTHEAST TITLE 2 STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET HR4490C COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMEOBOX PROTEIN ARISTALESS-LIKE 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HOMEOBOX DNA BINDING RESIDUES 209-280; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ALX4, KIAA1788; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PMGK; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET15NANO6HT_NESG KEYWDS STRUCTURAL GENOMICS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, KEYWDS 2 PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, GENE REGULATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR X.XU,A.ELETSKY,S.PULAVARTI,D.LEE,H.JANJUA,R.XIAO,T.B.ACTON, AUTHOR 2 J.K.EVERETT,G.T.MONTELIONE,T.SZYPERSKI,NORTHEAST STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (NESG) REVDAT 2 14-JUN-23 2M0C 1 REMARK SEQADV REVDAT 1 21-NOV-12 2M0C 0 JRNL AUTH X.XU,A.ELETSKY,S.PULAVARTI,D.LEE,H.JANJUA,R.XIAO,T.B.ACTON, JRNL AUTH 2 J.K.EVERETT,G.T.MONTELIONE,T.SZYPERSKI JRNL TITL SOLUTION NMR STRUCTURE OF HOMEOBOX DOMAIN OF HUMAN ALX4, JRNL TITL 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET JRNL TITL 3 HR4490C JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2, CYANA 3.0, AS-DP 1.0 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 HUANG, TEJERO, POWERS AND MONTELIONE (AS-DP) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE DETERMINATION WAS PERFORMED REMARK 3 BY RUNNING CYANA AND ASDP IN PARALLEL USING NOE-BASED REMARK 3 CONSTRAINTS AND PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS FROM REMARK 3 TALOS+. CONSENSUS PEAK ASSIGNMENTS WERE SELECTED AND USED IN REMARK 3 ITERATIVE REFINEMENT WITH CYANA. THE 20 CONFORMERS OUT OF 100 REMARK 3 WITH THE LOWEST TARGET FUNCTION WERE FURTHER REFINED BY REMARK 3 SIMULATED ANNEALING IN EXPLICIT WATER BATH USING THE PROGRAM CNS REMARK 3 WITH PARAM19 FORCE FIELD REMARK 4 REMARK 4 2M0C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000103048. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.871 MM [U-100% 13C; U-100% REMARK 210 15N] HR4490C, 100 MM SODIUM REMARK 210 CHLORIDE, 5 MM DTT, 0.02 % REMARK 210 SODIUM AZIDE, 10 MM TRIS-HCL, 50 REMARK 210 UM DSS, 90% H2O/10% D2O; 0.6 MM REMARK 210 [5% 13C; U-100% 15N] HR4490C, REMARK 210 100 MM SODIUM CHLORIDE, 5 MM DTT, REMARK 210 0.02 % SODIUM AZIDE, 10 MM TRIS- REMARK 210 HCL, 50 UM DSS, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALI; 3D HNCO; (4,3)D GFT REMARK 210 CABCA(CO)NH; 2D 1H-13C HSQC ARO; REMARK 210 (4,3)D GFT HNCABCA; 3D REMARK 210 SIMULTANEOUS 13C-AROMATIC,13C- REMARK 210 ALIPHATIC,15N EDITED 1H-1H NOESY; REMARK 210 3D HN(CA)CO; 3D HBHA(CO)NH; 3D REMARK 210 (H)CCH-TOCSY ALI; (4,3)D GFT REMARK 210 HCCH-COSY ALI; (4,3)D GFT HCCH- REMARK 210 COSY ARO; 2D 15N HSQC HIS; 2D REMARK 210 13C CT-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.2, CYANA 3.0, AS-DP 1.0, REMARK 210 AUTOASSIGN 2.3.1, CARA 1.8.4, REMARK 210 VNMRJ 2.2D, TALOS+, PSVS 1.4, REMARK 210 PROSA, CSI REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 2 88.84 -153.41 REMARK 500 1 ASN A 12 130.73 67.41 REMARK 500 1 GLN A 74 101.54 56.71 REMARK 500 2 PHE A 16 163.52 65.58 REMARK 500 2 GLU A 68 97.98 73.84 REMARK 500 2 GLN A 72 -83.83 67.68 REMARK 500 3 HIS A 2 -27.41 -166.55 REMARK 500 3 LYS A 6 140.68 65.17 REMARK 500 3 ARG A 10 96.79 -64.61 REMARK 500 3 THR A 14 -70.67 -130.42 REMARK 500 3 PHE A 16 -178.43 67.31 REMARK 500 3 ARG A 69 -41.50 -161.36 REMARK 500 4 ARG A 10 -76.01 -157.50 REMARK 500 4 ASP A 47 64.03 64.55 REMARK 500 4 ARG A 69 103.07 -171.06 REMARK 500 5 MET A 3 -1.75 72.35 REMARK 500 5 LYS A 8 96.10 63.84 REMARK 500 5 ARG A 10 -64.51 -146.75 REMARK 500 5 THR A 15 -62.45 -96.58 REMARK 500 5 ARG A 67 97.12 60.93 REMARK 500 5 ARG A 69 97.47 -59.03 REMARK 500 5 MET A 73 143.52 68.67 REMARK 500 5 GLN A 74 106.47 66.04 REMARK 500 6 ARG A 10 -93.52 -91.96 REMARK 500 6 ARG A 11 141.54 174.77 REMARK 500 6 PHE A 16 -165.62 60.77 REMARK 500 6 ARG A 69 -37.15 -148.23 REMARK 500 7 HIS A 2 101.05 -161.47 REMARK 500 7 THR A 14 93.49 67.48 REMARK 500 7 THR A 15 -54.59 -139.56 REMARK 500 7 ARG A 69 118.35 73.58 REMARK 500 7 MET A 73 67.32 -153.58 REMARK 500 8 HIS A 2 -29.99 -164.35 REMARK 500 8 ASN A 5 100.27 63.73 REMARK 500 8 LYS A 9 93.45 60.97 REMARK 500 8 ARG A 11 -77.66 -70.22 REMARK 500 8 THR A 17 -84.84 -74.03 REMARK 500 8 SER A 18 -50.96 -156.18 REMARK 500 8 LYS A 66 -61.86 -164.96 REMARK 500 9 PHE A 16 -179.83 62.06 REMARK 500 9 GLN A 72 83.47 -151.61 REMARK 500 9 MET A 73 -53.98 -157.14 REMARK 500 10 LYS A 8 82.10 68.32 REMARK 500 10 LYS A 9 22.17 -155.10 REMARK 500 10 ARG A 13 66.87 -158.09 REMARK 500 10 PHE A 16 153.85 66.16 REMARK 500 10 GLN A 74 34.38 -147.34 REMARK 500 11 ARG A 10 123.07 62.98 REMARK 500 11 ASN A 12 -80.15 -102.86 REMARK 500 11 GLU A 68 144.93 80.65 REMARK 500 REMARK 500 THIS ENTRY HAS 117 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NESG-HR4490C RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 18805 RELATED DB: BMRB DBREF 2M0C A 4 75 UNP Q9H161 ALX4_HUMAN 209 280 SEQADV 2M0C SER A 1 UNP Q9H161 EXPRESSION TAG SEQADV 2M0C HIS A 2 UNP Q9H161 EXPRESSION TAG SEQADV 2M0C MET A 3 UNP Q9H161 EXPRESSION TAG SEQRES 1 A 75 SER HIS MET SER ASN LYS GLY LYS LYS ARG ARG ASN ARG SEQRES 2 A 75 THR THR PHE THR SER TYR GLN LEU GLU GLU LEU GLU LYS SEQRES 3 A 75 VAL PHE GLN LYS THR HIS TYR PRO ASP VAL TYR ALA ARG SEQRES 4 A 75 GLU GLN LEU ALA MET ARG THR ASP LEU THR GLU ALA ARG SEQRES 5 A 75 VAL GLN VAL TRP PHE GLN ASN ARG ARG ALA LYS TRP ARG SEQRES 6 A 75 LYS ARG GLU ARG PHE GLY GLN MET GLN GLN HELIX 1 1 THR A 17 THR A 31 1 15 HELIX 2 2 ASP A 35 ASP A 47 1 13 HELIX 3 3 THR A 49 ARG A 65 1 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000