PDB Short entry for 2M3M HEADER ONCOPROTEIN/CELL ADHESION 22-JAN-13 2M3M TITLE SOLUTION STRUCTURE OF A COMPLEX CONSISTING OF HDLG/SAP-97 RESIDUES TITLE 2 318-406 AND HPV51 ONCOPROTEIN E6 RESIDUES 141-151 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DISKS LARGE HOMOLOG 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HDLGPDZ2, UNP RESIDUES 318-406; COMPND 5 SYNONYM: SYNAPSE-ASSOCIATED PROTEIN 97, SAP-97, SAP97, HDLG; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PROTEIN E6; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: E6CT11, UNP RESIDUES 141-151; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DLG1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET30; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HUMAN PAPILLOMAVIRUS; SOURCE 12 ORGANISM_TAXID: 10595; SOURCE 13 STRAIN: TYPE 51; SOURCE 14 GENE: E6; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 18 EXPRESSION_SYSTEM_VECTOR: PTYB21 KEYWDS PAPILLOMAVIRUS E6 PROTEINS, HPV, ONCOPROTEIN E6, E6, VIRAL, ONCOGENE KEYWDS 2 PROTEINS, PDZ DOMAIN, HDLGPDZ2, HDLG, HDLG1, SAP-97, DLG, KEYWDS 3 ONCOPROTEIN - CELL ADHESION PROTEIN COMPLEX, ONCOPROTEIN-CELL KEYWDS 4 ADHESION COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.MISCHO,O.OHLENSCHLAGER,M.GORLACH REVDAT 4 14-JUN-23 2M3M 1 REMARK REVDAT 3 25-DEC-19 2M3M 1 REMARK SEQADV SEQRES LINK REVDAT 2 16-OCT-13 2M3M 1 TITLE REVDAT 1 15-MAY-13 2M3M 0 JRNL AUTH A.MISCHO,O.OHLENSCHLAGER,P.HORTSCHANSKY,R.RAMACHANDRAN, JRNL AUTH 2 M.GORLACH JRNL TITL STRUCTURAL INSIGHTS INTO A WILDTYPE DOMAIN OF THE JRNL TITL 2 ONCOPROTEIN E6 AND ITS INTERACTION WITH A PDZ DOMAIN. JRNL REF PLOS ONE V. 8 62584 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23638119 JRNL DOI 10.1371/JOURNAL.PONE.0062584 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3, CNS, CYANA 3 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ (CNS), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M3M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000103166. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-100% 13C; U-100% 15N] REMARK 210 HDLGPDZ2, 2.0 MM E6CT11, 20 MM REMARK 210 SODIUM PHOSPHATE, 4 MM TCEP, REMARK 210 0.05 W/V SODIUM AZIDE, 90% H2O/ REMARK 210 10% D2O; 0.8 MM [U-100% 13C; U- REMARK 210 100% 15N] HDLGPDZ2, 2.0 MM REMARK 210 E6CT11, 20 MM SODIUM PHOSPHATE, REMARK 210 4 MM TCEP, 0.05 W/V SODIUM AZIDE, REMARK 210 100% D2O; 3.12 MM HDLGPDZ2, REMARK 210 1.25 MM [U-100% 13C; U-100% 15N] REMARK 210 E6CT11, 20 MM SODIUM PHOSPHATE, REMARK 210 4 MM TCEP, 0.05 W/V SODIUM AZIDE, REMARK 210 100% D2O; 3.12 MM HDLGPDZ2, REMARK 210 1.25 MM [U-100% 13C; U-100% 15N] REMARK 210 E6CT11, 20 MM SODIUM PHOSPHATE, REMARK 210 4 MM TCEP, 0.05 W/V SODIUM AZIDE, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCACB; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY ALIPHATIC; REMARK 210 3D 1H-13C NOESY AROMATIC; 3D REMARK 210 HCCH-COSY; 3D HNCO; 3D HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA, TOPSPIN REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING, MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: REMARK 210 IN ADDITION TO THE EXPERIMENTS LISTED BELOW, FILTERED/EDITED REMARK 210 EXPERIMENTS WERE PERFORMED TO REMARK 210 DISTINGUISH INTRA- AND INTER-MOLECULAR NOES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 412 REMARK 465 HIS A 413 REMARK 465 HIS A 414 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 352 OE2 GLU B 148 1.52 REMARK 500 OE2 GLU A 319 HZ1 LYS A 401 1.54 REMARK 500 HZ3 LYS A 327 OE2 GLU A 355 1.55 REMARK 500 HZ1 LYS A 321 OD2 ASP A 362 1.57 REMARK 500 OD1 ASP A 345 HG SER A 347 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 337 104.47 -53.05 REMARK 500 1 PRO A 343 107.73 -52.62 REMARK 500 1 ASN A 346 33.67 -83.05 REMARK 500 1 LYS A 364 29.86 42.58 REMARK 500 1 ASP A 396 0.95 58.46 REMARK 500 1 PRO A 405 110.07 -36.89 REMARK 500 1 SER A 408 -164.49 -161.20 REMARK 500 2 VAL A 337 100.78 -51.00 REMARK 500 2 PRO A 343 108.80 -51.33 REMARK 500 2 GLU A 381 83.34 62.83 REMARK 500 2 ASN A 393 46.39 -78.62 REMARK 500 2 HIS A 410 49.48 -159.92 REMARK 500 3 VAL A 337 103.87 -57.76 REMARK 500 3 PRO A 343 108.11 -52.20 REMARK 500 3 ASN A 346 38.02 -83.32 REMARK 500 3 PHE A 397 117.56 -169.24 REMARK 500 4 GLU A 381 83.55 61.06 REMARK 500 4 ASN A 393 32.55 -74.83 REMARK 500 4 ARG B 142 -37.12 69.62 REMARK 500 5 VAL A 337 100.28 -54.80 REMARK 500 5 ASN A 346 38.11 -82.66 REMARK 500 5 ASN A 376 -26.69 66.43 REMARK 500 5 GLU A 381 73.82 62.85 REMARK 500 5 SER A 408 -168.31 -168.89 REMARK 500 6 VAL A 337 108.51 -55.80 REMARK 500 6 PRO A 343 107.01 -53.53 REMARK 500 6 ASN A 346 38.01 -87.10 REMARK 500 6 LYS A 361 -60.16 -95.76 REMARK 500 6 GLU A 381 83.09 48.52 REMARK 500 6 ASN A 393 49.41 -77.69 REMARK 500 6 THR A 406 84.37 -67.06 REMARK 500 7 VAL A 337 107.49 -53.11 REMARK 500 7 PRO A 343 106.61 -53.60 REMARK 500 7 ASN A 346 38.05 -83.37 REMARK 500 7 GLU A 381 74.91 60.66 REMARK 500 7 SER A 408 -164.72 -167.96 REMARK 500 7 ASN B 147 157.80 173.93 REMARK 500 8 VAL A 337 106.60 -45.75 REMARK 500 8 GLU A 381 83.57 61.14 REMARK 500 8 SER A 408 -169.61 -109.41 REMARK 500 9 VAL A 337 100.49 -56.15 REMARK 500 9 GLU A 381 78.88 60.30 REMARK 500 9 ASN A 393 48.88 -80.83 REMARK 500 10 VAL A 337 108.53 -53.52 REMARK 500 10 PRO A 343 105.16 -52.81 REMARK 500 10 ASN A 346 33.63 -82.40 REMARK 500 10 LYS A 361 -60.49 -94.17 REMARK 500 10 GLU A 381 74.36 63.97 REMARK 500 10 ASN A 393 43.67 -80.27 REMARK 500 10 ASP A 396 14.52 55.77 REMARK 500 REMARK 500 THIS ENTRY HAS 110 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17942 RELATED DB: BMRB REMARK 900 PRE-DEPOSITED ASSIGNMENTS REMARK 900 RELATED ID: 2M3L RELATED DB: PDB DBREF 2M3M A 318 406 UNP Q12959 DLG1_HUMAN 318 406 DBREF 2M3M B 141 151 UNP P26554 VE6_HPV51 141 151 SEQADV 2M3M GLY A 407 UNP Q12959 EXPRESSION TAG SEQADV 2M3M SER A 408 UNP Q12959 EXPRESSION TAG SEQADV 2M3M HIS A 409 UNP Q12959 EXPRESSION TAG SEQADV 2M3M HIS A 410 UNP Q12959 EXPRESSION TAG SEQADV 2M3M HIS A 411 UNP Q12959 EXPRESSION TAG SEQADV 2M3M HIS A 412 UNP Q12959 EXPRESSION TAG SEQADV 2M3M HIS A 413 UNP Q12959 EXPRESSION TAG SEQADV 2M3M HIS A 414 UNP Q12959 EXPRESSION TAG SEQRES 1 A 97 MET GLU ILE LYS LEU ILE LYS GLY PRO LYS GLY LEU GLY SEQRES 2 A 97 PHE SER ILE ALA GLY GLY VAL GLY ASN GLN HIS ILE PRO SEQRES 3 A 97 GLY ASP ASN SER ILE TYR VAL THR LYS ILE ILE GLU GLY SEQRES 4 A 97 GLY ALA ALA HIS LYS ASP GLY LYS LEU GLN ILE GLY ASP SEQRES 5 A 97 LYS LEU LEU ALA VAL ASN ASN VAL CYS LEU GLU GLU VAL SEQRES 6 A 97 THR HIS GLU GLU ALA VAL THR ALA LEU LYS ASN THR SER SEQRES 7 A 97 ASP PHE VAL TYR LEU LYS VAL ALA LYS PRO THR GLY SER SEQRES 8 A 97 HIS HIS HIS HIS HIS HIS SEQRES 1 B 11 PCA ARG THR ARG GLN ARG ASN GLU THR GLN VAL MODRES 2M3M PCA B 141 GLN PYROGLUTAMIC ACID HET PCA B 141 15 HETNAM PCA PYROGLUTAMIC ACID FORMUL 2 PCA C5 H7 N O3 HELIX 1 1 GLY A 357 ASP A 362 1 6 HELIX 2 2 THR A 383 ASN A 393 1 11 SHEET 1 A 4 GLU A 319 LEU A 322 0 SHEET 2 A 4 VAL A 398 ALA A 403 -1 O LEU A 400 N ILE A 320 SHEET 3 A 4 LYS A 370 VAL A 374 -1 N ALA A 373 O LYS A 401 SHEET 4 A 4 VAL A 377 CYS A 378 -1 O VAL A 377 N VAL A 374 SHEET 1 B 6 GLU A 319 LEU A 322 0 SHEET 2 B 6 VAL A 398 ALA A 403 -1 O LEU A 400 N ILE A 320 SHEET 3 B 6 LYS A 370 VAL A 374 -1 N ALA A 373 O LYS A 401 SHEET 4 B 6 ILE A 348 ILE A 353 -1 N ILE A 348 O LEU A 371 SHEET 5 B 6 PHE A 331 GLY A 335 -1 N SER A 332 O LYS A 352 SHEET 6 B 6 THR B 149 GLN B 150 -1 O THR B 149 N ILE A 333 LINK C PCA B 141 N ARG B 142 1555 1555 1.31 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000