PDB Short entry for 2M49 HEADER CYTOKINE/METAL BINDING PROTEIN 03-FEB-13 2M49 TITLE STRUCTURAL INSIGHTS INTO HUMAN S100B AND BASIC FIBROBLAST GROWTH TITLE 2 FACTOR (FGF2) INTERACTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBROBLAST GROWTH FACTOR 2; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: UNP RESIDUES 161-286; COMPND 5 SYNONYM: FGF-2, BASIC FIBROBLAST GROWTH FACTOR, BFGF, HEPARIN-BINDING COMPND 6 GROWTH FACTOR 2, HBGF-2; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: PROTEIN S100-B; COMPND 11 CHAIN: B, D; COMPND 12 SYNONYM: S-100 PROTEIN BETA CHAIN, S-100 PROTEIN SUBUNIT BETA, S100 COMPND 13 CALCIUM-BINDING PROTEIN B; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FGF2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET(20B)+; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: S100B; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 20 EXPRESSION_SYSTEM_VECTOR: PET(20B)+ KEYWDS S100B, FGF2, CYTOKINE-METAL BINDING PROTEIN COMPLEX EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR A.A.GUPTA,C.YU REVDAT 2 14-JUN-23 2M49 1 REMARK SEQADV REVDAT 1 18-DEC-13 2M49 0 JRNL AUTH A.A.GUPTA,R.H.CHOU,H.LI,L.W.YANG,C.YU JRNL TITL STRUCTURAL INSIGHTS INTO THE INTERACTION OF HUMAN S100B AND JRNL TITL 2 BASIC FIBROBLAST GROWTH FACTOR (FGF2): EFFECTS ON FGFR1 JRNL TITL 3 RECEPTOR SIGNALING JRNL REF BIOCHIM.BIOPHYS.ACTA V.1834 2606 2013 JRNL REFN ISSN 0006-3002 JRNL PMID 24063890 JRNL DOI 10.1016/J.BBAPAP.2013.09.012 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMRJ 3.2, HADDOCK REMARK 3 AUTHORS : VARIAN (VNMRJ), ALEXANDRE BONVIN (HADDOCK) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M49 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000103189. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : 0.050 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-100% 13C; U-100% 15N] REMARK 210 S100B-1, 20 MM TRIS-2, 50 MM REMARK 210 AMMONIUM SULFATE-3, 5 MM CALCIUM REMARK 210 CHLORIDE-4, 5 MM DTT-5, 0.01 % REMARK 210 SODIUM AZIDE-6, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCA; 3D REMARK 210 HN(CO)CA; 3D HNCO; 3D HCACO; 3D REMARK 210 CBCA(CO)NH; 3D HNCACB REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMRJ 3.2, SPARKY, HADDOCK REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU D 137 HZ3 LYS C 135 1.56 REMARK 500 HZ3 LYS A 135 OE1 GLU B 46 1.56 REMARK 500 HZ1 LYS D 117 OE1 GLU D 158 1.56 REMARK 500 HE2 HIS C 35 OD1 ASP C 41 1.58 REMARK 500 HZ2 LYS A 77 OE1 GLU A 78 1.59 REMARK 500 HH22 ARG A 44 OD1 ASP B 54 1.59 REMARK 500 HZ1 LYS A 77 OE2 GLU A 91 1.59 REMARK 500 HE2 HIS A 35 OD1 ASP A 41 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 70 -33.54 -131.29 REMARK 500 1 PRO A 141 91.21 -69.06 REMARK 500 1 ASP B 23 -122.75 -95.13 REMARK 500 1 LYS B 24 21.73 -173.03 REMARK 500 1 LYS B 28 50.35 -118.65 REMARK 500 1 LYS B 29 -57.75 71.40 REMARK 500 1 ASN B 38 -42.28 -143.62 REMARK 500 1 GLU B 45 31.59 -95.47 REMARK 500 1 GLU B 46 -103.47 -111.10 REMARK 500 1 ILE B 47 -110.12 57.97 REMARK 500 1 LYS B 48 -79.09 60.49 REMARK 500 1 GLN B 50 82.15 65.85 REMARK 500 1 ASP D 114 -119.33 -103.41 REMARK 500 1 LYS D 115 29.97 -174.08 REMARK 500 1 LYS D 119 54.31 -116.33 REMARK 500 1 LYS D 120 -58.18 69.77 REMARK 500 1 GLU D 136 38.40 -92.34 REMARK 500 1 GLU D 137 -107.85 -117.93 REMARK 500 1 ILE D 138 -113.28 59.75 REMARK 500 1 LYS D 139 -72.61 61.84 REMARK 500 1 GLN D 141 78.77 62.57 REMARK 500 1 ASP D 156 -4.93 -144.58 REMARK 500 1 GLU D 180 101.46 -162.38 REMARK 500 1 GLU C 78 6.44 -68.16 REMARK 500 1 THR C 112 2.49 -69.79 REMARK 500 2 GLU A 58 -60.19 -107.26 REMARK 500 2 ARG A 60 98.10 -60.68 REMARK 500 2 SER A 69 37.80 -80.92 REMARK 500 2 ALA A 70 -35.06 -146.57 REMARK 500 2 TYR A 111 72.24 -116.62 REMARK 500 2 HIS B 25 -38.85 -133.79 REMARK 500 2 LYS B 29 -80.66 53.08 REMARK 500 2 PHE B 43 -59.08 -121.03 REMARK 500 2 GLU B 46 -113.02 -157.94 REMARK 500 2 ILE B 47 -98.08 64.44 REMARK 500 2 LYS B 48 -72.11 62.25 REMARK 500 2 ASP B 65 -24.25 -156.65 REMARK 500 2 GLU B 89 83.18 -174.93 REMARK 500 2 GLU D 112 30.86 -95.52 REMARK 500 2 HIS D 116 -35.69 -137.76 REMARK 500 2 LYS D 120 -76.41 55.80 REMARK 500 2 GLU D 136 78.87 -103.08 REMARK 500 2 GLU D 137 -112.52 -154.25 REMARK 500 2 ILE D 138 -102.92 62.45 REMARK 500 2 LYS D 139 -64.20 66.50 REMARK 500 2 ASP D 156 -17.48 -158.88 REMARK 500 2 GLU D 180 88.10 -174.61 REMARK 500 2 ARG C 60 97.46 -59.95 REMARK 500 2 ALA C 70 -36.98 -160.27 REMARK 500 2 TYR C 111 74.71 -114.58 REMARK 500 REMARK 500 THIS ENTRY HAS 258 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18995 RELATED DB: BMRB REMARK 900 RELATED ID: 1BFG RELATED DB: PDB REMARK 900 HADDOCK STARTING STRUCTURE REMARK 900 RELATED ID: 1UWO RELATED DB: PDB REMARK 900 HADDOCK STARTING STRUCTURE DBREF 2M49 A 19 144 UNP P09038 FGF2_HUMAN 161 286 DBREF 2M49 B 1 91 UNP P04271 S100B_HUMAN 2 92 DBREF 2M49 D 92 182 UNP P04271 S100B_HUMAN 2 92 DBREF 2M49 C 19 144 UNP P09038 FGF2_HUMAN 161 286 SEQADV 2M49 SER A 69 UNP P09038 CYS 211 ENGINEERED MUTATION SEQADV 2M49 SER A 87 UNP P09038 CYS 229 ENGINEERED MUTATION SEQADV 2M49 SER C 69 UNP P09038 CYS 211 ENGINEERED MUTATION SEQADV 2M49 SER C 87 UNP P09038 CYS 229 ENGINEERED MUTATION SEQRES 1 A 126 ASP PRO LYS ARG LEU TYR CYS LYS ASN GLY GLY PHE PHE SEQRES 2 A 126 LEU ARG ILE HIS PRO ASP GLY ARG VAL ASP GLY VAL ARG SEQRES 3 A 126 GLU LYS SER ASP PRO HIS ILE LYS LEU GLN LEU GLN ALA SEQRES 4 A 126 GLU GLU ARG GLY VAL VAL SER ILE LYS GLY VAL SER ALA SEQRES 5 A 126 ASN ARG TYR LEU ALA MET LYS GLU ASP GLY ARG LEU LEU SEQRES 6 A 126 ALA SER LYS SER VAL THR ASP GLU CYS PHE PHE PHE GLU SEQRES 7 A 126 ARG LEU GLU SER ASN ASN TYR ASN THR TYR ARG SER ARG SEQRES 8 A 126 LYS TYR THR SER TRP TYR VAL ALA LEU LYS ARG THR GLY SEQRES 9 A 126 GLN TYR LYS LEU GLY SER LYS THR GLY PRO GLY GLN LYS SEQRES 10 A 126 ALA ILE LEU PHE LEU PRO MET SER ALA SEQRES 1 B 91 SER GLU LEU GLU LYS ALA MET VAL ALA LEU ILE ASP VAL SEQRES 2 B 91 PHE HIS GLN TYR SER GLY ARG GLU GLY ASP LYS HIS LYS SEQRES 3 B 91 LEU LYS LYS SER GLU LEU LYS GLU LEU ILE ASN ASN GLU SEQRES 4 B 91 LEU SER HIS PHE LEU GLU GLU ILE LYS GLU GLN GLU VAL SEQRES 5 B 91 VAL ASP LYS VAL MET GLU THR LEU ASP ASN ASP GLY ASP SEQRES 6 B 91 GLY GLU CYS ASP PHE GLN GLU PHE MET ALA PHE VAL ALA SEQRES 7 B 91 MET VAL THR THR ALA CYS HIS GLU PHE PHE GLU HIS GLU SEQRES 1 D 91 SER GLU LEU GLU LYS ALA MET VAL ALA LEU ILE ASP VAL SEQRES 2 D 91 PHE HIS GLN TYR SER GLY ARG GLU GLY ASP LYS HIS LYS SEQRES 3 D 91 LEU LYS LYS SER GLU LEU LYS GLU LEU ILE ASN ASN GLU SEQRES 4 D 91 LEU SER HIS PHE LEU GLU GLU ILE LYS GLU GLN GLU VAL SEQRES 5 D 91 VAL ASP LYS VAL MET GLU THR LEU ASP ASN ASP GLY ASP SEQRES 6 D 91 GLY GLU CYS ASP PHE GLN GLU PHE MET ALA PHE VAL ALA SEQRES 7 D 91 MET VAL THR THR ALA CYS HIS GLU PHE PHE GLU HIS GLU SEQRES 1 C 126 ASP PRO LYS ARG LEU TYR CYS LYS ASN GLY GLY PHE PHE SEQRES 2 C 126 LEU ARG ILE HIS PRO ASP GLY ARG VAL ASP GLY VAL ARG SEQRES 3 C 126 GLU LYS SER ASP PRO HIS ILE LYS LEU GLN LEU GLN ALA SEQRES 4 C 126 GLU GLU ARG GLY VAL VAL SER ILE LYS GLY VAL SER ALA SEQRES 5 C 126 ASN ARG TYR LEU ALA MET LYS GLU ASP GLY ARG LEU LEU SEQRES 6 C 126 ALA SER LYS SER VAL THR ASP GLU CYS PHE PHE PHE GLU SEQRES 7 C 126 ARG LEU GLU SER ASN ASN TYR ASN THR TYR ARG SER ARG SEQRES 8 C 126 LYS TYR THR SER TRP TYR VAL ALA LEU LYS ARG THR GLY SEQRES 9 C 126 GLN TYR LYS LEU GLY SER LYS THR GLY PRO GLY GLN LYS SEQRES 10 C 126 ALA ILE LEU PHE LEU PRO MET SER ALA HELIX 1 1 ASP A 48 ILE A 51 5 4 HELIX 2 2 LEU A 126 THR A 130 5 5 HELIX 3 3 GLU B 2 GLY B 19 1 18 HELIX 4 4 LYS B 29 ASN B 37 1 9 HELIX 5 5 GLU B 51 ASP B 61 1 11 HELIX 6 6 ASP B 69 PHE B 87 1 19 HELIX 7 7 GLU D 93 GLY D 110 1 18 HELIX 8 8 LYS D 120 GLU D 130 1 11 HELIX 9 9 GLU D 142 ASP D 152 1 11 HELIX 10 10 ASP D 160 GLU D 177 1 18 HELIX 11 11 PHE D 178 GLU D 180 5 3 HELIX 12 12 THR C 89 CYS C 92 5 4 HELIX 13 13 LEU C 126 THR C 130 5 5 SHEET 1 A 4 VAL A 40 VAL A 43 0 SHEET 2 A 4 PHE A 30 ILE A 34 -1 N ARG A 33 O ASP A 41 SHEET 3 A 4 LYS A 21 CYS A 25 -1 N CYS A 25 O PHE A 30 SHEET 4 A 4 PHE A 139 SER A 143 -1 O MET A 142 N ARG A 22 SHEET 1 B 4 LEU A 53 GLU A 59 0 SHEET 2 B 4 VAL A 62 GLY A 67 -1 O LYS A 66 N GLN A 54 SHEET 3 B 4 PHE A 93 LEU A 98 -1 O PHE A 94 N VAL A 63 SHEET 4 B 4 ASN A 104 SER A 108 -1 O ARG A 107 N PHE A 95 SHEET 1 C 2 TYR A 73 MET A 76 0 SHEET 2 C 2 LEU A 82 SER A 85 -1 O SER A 85 N TYR A 73 SHEET 1 D 2 ALA A 117 LEU A 118 0 SHEET 2 D 2 TYR A 124 LYS A 125 -1 O LYS A 125 N ALA A 117 SHEET 1 E 4 VAL C 40 VAL C 43 0 SHEET 2 E 4 PHE C 30 ILE C 34 -1 N ARG C 33 O ASP C 41 SHEET 3 E 4 LYS C 21 CYS C 25 -1 N CYS C 25 O PHE C 30 SHEET 4 E 4 PHE C 139 SER C 143 -1 O MET C 142 N ARG C 22 SHEET 1 F 4 LEU C 53 GLU C 59 0 SHEET 2 F 4 VAL C 62 GLY C 67 -1 O LYS C 66 N GLN C 54 SHEET 3 F 4 PHE C 94 LEU C 98 -1 O PHE C 94 N VAL C 63 SHEET 4 F 4 ASN C 104 SER C 108 -1 O ARG C 107 N PHE C 95 SHEET 1 G 2 TYR C 73 MET C 76 0 SHEET 2 G 2 LEU C 82 SER C 85 -1 O SER C 85 N TYR C 73 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000