PDB Short entry for 2M9X HEADER TRANSFERASE 20-JUN-13 2M9X TITLE SOLUTION NMR STRUCTURE OF MICROTUBULE-ASSOCIATED SERINE/THREONINE- TITLE 2 PROTEIN KINASE 1 FROM HOMO SAPIENS, NORTHEAST STRUCTURAL GENOMICS TITLE 3 CONSORTIUM (NESG) TARGET HR9151A COMPND MOL_ID: 1; COMPND 2 MOLECULE: MICROTUBULE-ASSOCIATED SERINE/THREONINE-PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 187-287; COMPND 5 SYNONYM: SYNTROPHIN-ASSOCIATED SERINE/THREONINE-PROTEIN KINASE; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIAA0973, MAST1, SAST; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PMGK; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET15_NESG KEYWDS STRUCTURAL GENOMICS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG), KEYWDS 2 PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR X.XU,A.ELETSKY,R.SHASTRY,D.LEE,K.HAMILTON,R.XIAO,T.B.ACTON, AUTHOR 2 J.K.EVERETT,G.T.MONTELIONE,T.SZYPERSKI,NORTHEAST STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (NESG) REVDAT 2 14-JUN-23 2M9X 1 REMARK SEQADV REVDAT 1 10-JUL-13 2M9X 0 JRNL AUTH X.XU,A.ELETSKY,R.SHASTRY,D.LEE,K.HAMILTON,R.XIAO,T.B.ACTON, JRNL AUTH 2 J.K.EVERETT,G.T.MONTELIONE,T.SZYPERSKI JRNL TITL SOLUTION NMR STRUCTURE OF MICROTUBULE-ASSOCIATED JRNL TITL 2 SERINE/THREONINE-PROTEIN KINASE 1 FROM HOMO SAPIENS, JRNL TITL 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET JRNL TITL 4 HR9151A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3, CYANA 3.0, AUTOSTRUCTURE 2.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 HUANG, TEJERO, POWERS AND MONTELIONE REMARK 3 (AUTOSTRUCTURE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE WAS CALCULATED BY RUNNING REMARK 3 CYANA AND ASDP IN PARALLEL USING NOE-BASED CONSTRAINTS AND PHI REMARK 3 AND PSI DIHEDRAL ANGLE CONSTRAINTS DERIVED FROM TALOS+. REMARK 3 CONSENSUS PEAK ASSIGNMENTS WERE SELECTED AND USED IN ITERATIVE REMARK 3 REFINEMENT WITH CYANA. THE 20 CONFORMERS OUT OF 100 WITH THE REMARK 3 LOWEST TARGET FUNCTION WERE FURTHER REFINED BY SIMULATED REMARK 3 ANNEALING IN EXPLICIT WATER BATH USING THE PROGRAM CNS WITH REMARK 3 PARAM19 FORCE FIELD. REMARK 4 REMARK 4 2M9X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000103393. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.508 MM [U-100% 13C; U-100% REMARK 210 15N] HR9151A.011, 5 MM DTT, 100 REMARK 210 MM NACL, 10 MM TRIS-HCL PH 7.5, REMARK 210 0.02 % NAN3, 50 UM DSS, 90% H2O/ REMARK 210 10% D2O; 0.39 MM [%5-13C; U-100% REMARK 210 15N] HR9151A.011, 5 MM DTT, 100 REMARK 210 MM NACL, 10 MM TRIS-HCL PH 7.5, REMARK 210 0.02 % NAN3, 50 UM DSS, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C CT REMARK 210 HSQC ALIPHATIC; 3D HNCO; 3D REMARK 210 CBCA(CO)NH; 3D HNCACB; 2D 1H-13C REMARK 210 CT HSQC AROMATIC; 3D SIMUTANEOUS REMARK 210 13C-AROMATIC,13C-ALIPHATIC,15N REMARK 210 EDITED 1H-1H NOESY; 3D HCCH- REMARK 210 TOCSY; 3D HBHA(CO)NH; 3D HN(CA) REMARK 210 CO; 2D 1H-15N HSQC_WIDE; 3D (H) REMARK 210 CCH-COSYALI; 3D (H)CCH-COSYARO; REMARK 210 2D 1H-13C HSQC METHYL REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.3, CYANA 3.0, REMARK 210 AUTOSTRUCTURE 2.1, AUTOASSIGN REMARK 210 2.3.1, XEASY, VNMRJ 2.2D, TALOS+, REMARK 210 PSVS 1.4, CARA 1.8.4, PROSA, CSI REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 20 VAL A 34 CB VAL A 34 CG2 0.133 REMARK 500 20 ILE A 49 CB ILE A 49 CG2 -0.191 REMARK 500 20 VAL A 68 CB VAL A 68 CG2 0.182 REMARK 500 20 VAL A 93 CB VAL A 93 CG1 0.137 REMARK 500 20 VAL A 93 CB VAL A 93 CG2 0.210 REMARK 500 20 ALA A 111 CA ALA A 111 CB 0.259 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 20 VAL A 68 CA - CB - CG1 ANGL. DEV. = -10.0 DEGREES REMARK 500 20 VAL A 68 CA - CB - CG2 ANGL. DEV. = 11.9 DEGREES REMARK 500 20 ALA A 111 CB - CA - C ANGL. DEV. = 10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 3 -178.24 73.52 REMARK 500 1 HIS A 7 36.12 -173.97 REMARK 500 1 HIS A 8 -83.18 -86.48 REMARK 500 1 PRO A 12 89.47 -60.57 REMARK 500 1 LEU A 35 117.82 66.29 REMARK 500 1 LEU A 37 -85.02 71.27 REMARK 500 1 ILE A 65 107.14 -56.86 REMARK 500 1 ARG A 87 97.98 -61.80 REMARK 500 1 LEU A 91 -53.28 -140.47 REMARK 500 1 SER A 108 165.33 73.24 REMARK 500 2 LYS A 13 161.59 71.06 REMARK 500 2 TYR A 29 -69.90 -132.93 REMARK 500 2 GLU A 30 -170.91 60.82 REMARK 500 2 PRO A 31 33.95 -83.56 REMARK 500 2 ASP A 32 -89.41 -78.49 REMARK 500 2 SER A 33 71.99 -117.29 REMARK 500 2 PRO A 36 47.41 -83.05 REMARK 500 2 LEU A 37 -160.02 63.95 REMARK 500 2 ILE A 65 101.49 -57.91 REMARK 500 2 GLU A 86 42.40 -101.06 REMARK 500 2 SER A 90 -164.92 -114.23 REMARK 500 3 HIS A 10 40.36 -93.16 REMARK 500 3 LYS A 13 -65.18 65.82 REMARK 500 3 ASP A 32 70.25 62.04 REMARK 500 3 SER A 33 -64.71 -174.13 REMARK 500 3 ILE A 65 95.67 -68.07 REMARK 500 3 PRO A 110 91.52 -65.99 REMARK 500 4 HIS A 3 108.74 -160.65 REMARK 500 4 HIS A 4 17.75 -162.40 REMARK 500 4 TYR A 29 -86.13 -135.22 REMARK 500 4 GLU A 30 149.74 53.82 REMARK 500 4 PRO A 31 45.78 -85.62 REMARK 500 4 SER A 33 13.32 -151.83 REMARK 500 4 LEU A 37 90.93 75.69 REMARK 500 4 ALA A 38 -103.68 62.07 REMARK 500 4 LEU A 64 36.75 -88.05 REMARK 500 4 ARG A 87 -100.41 73.59 REMARK 500 4 GLU A 89 99.29 -49.78 REMARK 500 4 ALA A 111 -43.97 175.51 REMARK 500 5 HIS A 4 -46.30 -145.60 REMARK 500 5 ALA A 14 -15.07 69.13 REMARK 500 5 TYR A 29 -155.44 -136.03 REMARK 500 5 SER A 33 87.46 -55.52 REMARK 500 5 ARG A 87 -88.33 65.02 REMARK 500 5 SER A 90 -44.61 -139.06 REMARK 500 5 LEU A 91 -22.58 -147.41 REMARK 500 5 SER A 108 108.02 -49.73 REMARK 500 5 ARG A 109 114.07 -37.42 REMARK 500 6 HIS A 4 99.09 -66.45 REMARK 500 6 HIS A 10 44.29 -81.86 REMARK 500 REMARK 500 THIS ENTRY HAS 231 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 35 PRO A 36 6 149.52 REMARK 500 ARG A 109 PRO A 110 6 149.31 REMARK 500 GLU A 30 PRO A 31 7 -142.59 REMARK 500 LEU A 35 PRO A 36 8 -141.53 REMARK 500 MET A 11 PRO A 12 11 -145.87 REMARK 500 ARG A 109 PRO A 110 11 136.35 REMARK 500 ARG A 109 PRO A 110 14 147.76 REMARK 500 HIS A 10 MET A 11 15 -148.09 REMARK 500 VAL A 34 LEU A 35 16 -147.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NESG-HR9151A RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 19314 RELATED DB: BMRB DBREF 2M9X A 12 112 UNP Q9Y2H9 MAST1_HUMAN 187 287 SEQADV 2M9X MET A 1 UNP Q9Y2H9 EXPRESSION TAG SEQADV 2M9X GLY A 2 UNP Q9Y2H9 EXPRESSION TAG SEQADV 2M9X HIS A 3 UNP Q9Y2H9 EXPRESSION TAG SEQADV 2M9X HIS A 4 UNP Q9Y2H9 EXPRESSION TAG SEQADV 2M9X HIS A 5 UNP Q9Y2H9 EXPRESSION TAG SEQADV 2M9X HIS A 6 UNP Q9Y2H9 EXPRESSION TAG SEQADV 2M9X HIS A 7 UNP Q9Y2H9 EXPRESSION TAG SEQADV 2M9X HIS A 8 UNP Q9Y2H9 EXPRESSION TAG SEQADV 2M9X SER A 9 UNP Q9Y2H9 EXPRESSION TAG SEQADV 2M9X HIS A 10 UNP Q9Y2H9 EXPRESSION TAG SEQADV 2M9X MET A 11 UNP Q9Y2H9 EXPRESSION TAG SEQRES 1 A 112 MET GLY HIS HIS HIS HIS HIS HIS SER HIS MET PRO LYS SEQRES 2 A 112 ALA THR ALA GLN MET GLU GLU LYS LEU ARG ASP PHE THR SEQRES 3 A 112 ARG ALA TYR GLU PRO ASP SER VAL LEU PRO LEU ALA ASP SEQRES 4 A 112 GLY VAL LEU SER PHE ILE HIS HIS GLN ILE ILE GLU LEU SEQRES 5 A 112 ALA ARG ASP CYS LEU THR LYS SER ARG ASP GLY LEU ILE SEQRES 6 A 112 THR THR VAL TYR PHE TYR GLU LEU GLN GLU ASN LEU GLU SEQRES 7 A 112 LYS LEU LEU GLN ASP ALA TYR GLU ARG SER GLU SER LEU SEQRES 8 A 112 GLU VAL ALA PHE VAL THR GLN LEU VAL LYS LYS LEU LEU SEQRES 9 A 112 ILE ILE ILE SER ARG PRO ALA ARG HELIX 1 1 LYS A 13 ALA A 28 1 16 HELIX 2 2 GLY A 40 GLY A 63 1 24 HELIX 3 3 THR A 66 ARG A 87 1 22 HELIX 4 4 GLU A 92 ILE A 107 1 16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000