PDB Short entry for 2MBG HEADER PROTEIN BINDING 30-JUL-13 2MBG TITLE RLIP76 (GAP-GBD) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RALA-BINDING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 184-446; COMPND 5 SYNONYM: RALBP1, 76 KDA RAL-INTERACTING PROTEIN, DINITROPHENYL S- COMPND 6 GLUTATHIONE ATPASE, DNP-SG ATPASE, RAL-INTERACTING PROTEIN 1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RALBP1, RLIP1, RLIP76; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET16B KEYWDS RHOGAP, RALBP1, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 35 AUTHOR K.V.RAJASEKAR,L.J.CAMPBELL,D.NIETLISPACH,D.OWEN,H.R.MOTT REVDAT 3 14-JUN-23 2MBG 1 REMARK SEQADV REVDAT 2 25-DEC-13 2MBG 1 JRNL REVDAT 1 04-DEC-13 2MBG 0 JRNL AUTH K.V.RAJASEKAR,L.J.CAMPBELL,D.NIETLISPACH,D.OWEN,H.R.MOTT JRNL TITL THE STRUCTURE OF THE RLIP76 RHOGAP-RAL BINDING DOMAIN DYAD: JRNL TITL 2 FIXED POSITION OF THE DOMAINS LEADS TO DUAL ENGAGEMENT OF JRNL TITL 3 SMALL G PROTEINS AT THE MEMBRANE. JRNL REF STRUCTURE V. 21 2131 2013 JRNL REFN ISSN 0969-2126 JRNL PMID 24207123 JRNL DOI 10.1016/J.STR.2013.09.007 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AZARA, CNS REMARK 3 AUTHORS : BOUCHER (AZARA), REMARK 3 BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI, REMARK 3 NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ARIA BASED WATER REFINEMENT REMARK 4 REMARK 4 2MBG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000103441. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.9 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.7 MM RLIP76-GAP-GBD, 20 MM REMARK 210 TRIS, 100 MM SODIUM CHLORIDE, REMARK 210 0.05 % SODIUM AZIDE, 5 MM DTT, REMARK 210 90 % H20, 10 % D20, 90% H2O/10% REMARK 210 D2O; 0.7 MM [U-100% 15N] RLIP76- REMARK 210 GAP-GBD, 20 MM TRIS, 100 MM REMARK 210 SODIUM CHLORIDE, 0.05 % SODIUM REMARK 210 AZIDE, 5 MM DTT, 90 % H20, 10 % REMARK 210 D20, 90% H2O/10% D2O; 0.6 MM [U- REMARK 210 100% 13C; U-100% 15N] RLIP76-GAP- REMARK 210 GBD, 20 MM TRIS, 100 MM SODIUM REMARK 210 CHLORIDE, 0.05 % SODIUM AZIDE, 5 REMARK 210 MM DTT, 90 % H20, 10 % D20, 90% REMARK 210 H2O/10% D2O; 0.4 MM [U-100% 13C; REMARK 210 U-100% 15N; U-80% 2H] RLIP76-GAP- REMARK 210 GBD, 20 MM TRIS, 100 MM SODIUM REMARK 210 CHLORIDE, 0.05 % SODIUM AZIDE, 5 REMARK 210 MM DTT, 90 % H20, 10 % D20, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N-TROSY; 3D HNCA; 3D REMARK 210 HN(CO)CA; 3D HNCACB; 3D HN(COCA) REMARK 210 CB; 3D HNCO; 3D 1H-15N NOESY; 3D REMARK 210 HBHA(CBCACO)NH; 3D HCCH-TOCSY; REMARK 210 3D 1H-13C NOESY; 2D 1H-13C HSQC; REMARK 210 3D HCCH-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPN-ANALYSIS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 35 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 256 HZ3 LYS A 378 1.55 REMARK 500 HZ2 LYS A 442 OE1 GLU A 445 1.56 REMARK 500 OD2 ASP A 415 HZ2 LYS A 425 1.57 REMARK 500 OD1 ASP A 218 HZ1 LYS A 222 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 185 150.34 74.35 REMARK 500 1 LYS A 187 90.60 65.13 REMARK 500 1 ILE A 189 -44.57 -139.42 REMARK 500 1 MET A 203 -76.23 -106.53 REMARK 500 1 TYR A 204 -87.51 -79.25 REMARK 500 1 ILE A 207 27.65 -71.65 REMARK 500 1 ARG A 208 74.47 58.07 REMARK 500 1 LEU A 209 138.01 -172.99 REMARK 500 1 THR A 280 173.64 54.45 REMARK 500 1 GLN A 351 38.56 80.16 REMARK 500 1 SER A 353 150.66 -46.74 REMARK 500 1 PHE A 368 -144.38 -107.27 REMARK 500 1 ALA A 386 -57.51 73.42 REMARK 500 1 MET A 388 -52.44 -156.68 REMARK 500 1 THR A 390 -0.94 -145.89 REMARK 500 2 LYS A 187 90.07 62.73 REMARK 500 2 ILE A 189 -53.38 -22.81 REMARK 500 2 MET A 203 -90.59 -108.76 REMARK 500 2 TYR A 204 -90.70 -71.41 REMARK 500 2 ARG A 208 86.51 -28.62 REMARK 500 2 LEU A 209 130.07 -172.90 REMARK 500 2 TYR A 231 -35.85 77.03 REMARK 500 2 GLU A 250 -7.29 84.12 REMARK 500 2 GLU A 251 136.33 81.17 REMARK 500 2 SER A 252 89.68 -164.18 REMARK 500 2 THR A 280 -178.88 53.57 REMARK 500 2 LYS A 336 -12.09 133.36 REMARK 500 2 MET A 337 -168.14 -75.81 REMARK 500 2 GLN A 351 42.41 79.03 REMARK 500 2 PHE A 368 -79.72 -106.06 REMARK 500 2 ARG A 381 31.95 -94.94 REMARK 500 2 SER A 383 15.89 59.29 REMARK 500 2 MET A 385 -56.68 -172.77 REMARK 500 2 ALA A 386 -79.56 47.73 REMARK 500 2 THR A 387 -79.38 -131.95 REMARK 500 2 MET A 388 -55.19 178.09 REMARK 500 2 THR A 390 -18.29 168.87 REMARK 500 3 MET A 183 119.56 -161.24 REMARK 500 3 LYS A 187 96.32 65.44 REMARK 500 3 ILE A 189 -54.21 -21.23 REMARK 500 3 THR A 201 40.84 -107.56 REMARK 500 3 MET A 202 171.89 -59.88 REMARK 500 3 MET A 203 -121.65 -170.96 REMARK 500 3 TYR A 204 -84.84 -46.01 REMARK 500 3 ILE A 207 41.97 -80.27 REMARK 500 3 GLU A 250 74.99 62.49 REMARK 500 3 THR A 280 -178.58 51.08 REMARK 500 3 LYS A 336 -27.75 158.56 REMARK 500 3 GLN A 351 42.73 78.35 REMARK 500 3 PHE A 368 -95.42 -145.57 REMARK 500 REMARK 500 THIS ENTRY HAS 636 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17608 RELATED DB: BMRB DBREF 2MBG A 184 446 UNP Q15311 RBP1_HUMAN 184 446 SEQADV 2MBG HIS A 182 UNP Q15311 EXPRESSION TAG SEQADV 2MBG MET A 183 UNP Q15311 EXPRESSION TAG SEQRES 1 A 265 HIS MET PRO ASN LEU LYS PRO ILE PHE GLY ILE PRO LEU SEQRES 2 A 265 ALA ASP ALA VAL GLU ARG THR MET MET TYR ASP GLY ILE SEQRES 3 A 265 ARG LEU PRO ALA VAL PHE ARG GLU CYS ILE ASP TYR VAL SEQRES 4 A 265 GLU LYS TYR GLY MET LYS CYS GLU GLY ILE TYR ARG VAL SEQRES 5 A 265 SER GLY ILE LYS SER LYS VAL ASP GLU LEU LYS ALA ALA SEQRES 6 A 265 TYR ASP ARG GLU GLU SER THR ASN LEU GLU ASP TYR GLU SEQRES 7 A 265 PRO ASN THR VAL ALA SER LEU LEU LYS GLN TYR LEU ARG SEQRES 8 A 265 ASP LEU PRO GLU ASN LEU LEU THR LYS GLU LEU MET PRO SEQRES 9 A 265 ARG PHE GLU GLU ALA CYS GLY ARG THR THR GLU THR GLU SEQRES 10 A 265 LYS VAL GLN GLU PHE GLN ARG LEU LEU LYS GLU LEU PRO SEQRES 11 A 265 GLU CYS ASN TYR LEU LEU ILE SER TRP LEU ILE VAL HIS SEQRES 12 A 265 MET ASP HIS VAL ILE ALA LYS GLU LEU GLU THR LYS MET SEQRES 13 A 265 ASN ILE GLN ASN ILE SER ILE VAL LEU SER PRO THR VAL SEQRES 14 A 265 GLN ILE SER ASN ARG VAL LEU TYR VAL PHE PHE THR HIS SEQRES 15 A 265 VAL GLN GLU LEU PHE GLY ASN VAL VAL LEU LYS GLN VAL SEQRES 16 A 265 MET LYS PRO LEU ARG TRP SER ASN MET ALA THR MET PRO SEQRES 17 A 265 THR LEU PRO GLU THR GLN ALA GLY ILE LYS GLU GLU ILE SEQRES 18 A 265 ARG ARG GLN GLU PHE LEU LEU ASN CYS LEU HIS ARG ASP SEQRES 19 A 265 LEU GLN GLY GLY ILE LYS ASP LEU SER LYS GLU GLU ARG SEQRES 20 A 265 LEU TRP GLU VAL GLN ARG ILE LEU THR ALA LEU LYS ARG SEQRES 21 A 265 LYS LEU ARG GLU ALA HELIX 1 1 PRO A 193 THR A 201 1 9 HELIX 2 2 PRO A 210 TYR A 223 1 14 HELIX 3 3 ILE A 236 ARG A 249 1 14 HELIX 4 4 ASN A 254 TYR A 258 5 5 HELIX 5 5 GLU A 259 LEU A 274 1 16 HELIX 6 6 LEU A 279 GLY A 292 1 14 HELIX 7 7 THR A 295 LEU A 310 1 16 HELIX 8 8 PRO A 311 THR A 335 1 25 HELIX 9 9 ASN A 338 GLN A 351 1 14 HELIX 10 10 SER A 353 PHE A 368 1 16 HELIX 11 11 THR A 394 GLN A 417 1 24 HELIX 12 12 ASP A 422 ARG A 444 1 23 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000