PDB Short entry for 2MBH HEADER TRANSCRIPTION 31-JUL-13 2MBH TITLE NMR STRUCTURE OF EKLF(22-40)/UBIQUITIN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: KRUEPPEL-LIKE FACTOR 1; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: ERYTHROID KRUEPPEL-LIKE TRANSCRIPTION FACTOR, EKLF; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: UBIQUITIN; COMPND 8 CHAIN: A; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KLF1, EKLF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX-2T; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: RAINBOW TROUT; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: UBB; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_VECTOR: PET21B+ KEYWDS PROTEIN-PROTEIN COMPLEX, EKLF, UBIQUITIN, UIM/MIU, TRANSCRIPTION KEYWDS 2 FACTOR TAD, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.RAIOLA,J.G.OMICHINSKI REVDAT 3 14-JUN-23 2MBH 1 SEQADV REVDAT 2 27-NOV-13 2MBH 1 JRNL REVDAT 1 09-OCT-13 2MBH 0 JRNL AUTH L.RAIOLA,M.LUSSIER-PRICE,D.GAGNON,J.LAFRANCE-VANASSE, JRNL AUTH 2 X.MASCLE,G.ARSENEAULT,P.LEGAULT,J.ARCHAMBAULT,J.G.OMICHINSKI JRNL TITL STRUCTURAL CHARACTERIZATION OF A NONCOVALENT COMPLEX BETWEEN JRNL TITL 2 UBIQUITIN AND THE TRANSACTIVATION DOMAIN OF THE JRNL TITL 3 ERYTHROID-SPECIFIC FACTOR EKLF. JRNL REF STRUCTURE V. 21 2014 2013 JRNL REFN ISSN 0969-2126 JRNL PMID 24139988 JRNL DOI 10.1016/J.STR.2013.08.027 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MBH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000103442. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 4 MM UBI_UNL, 0.8 MM [U-100% REMARK 210 15N] EKLF, 90% H2O/10% D2O; 4 MM REMARK 210 EKLF_UNL, 0.8 MM [U-100% 15N] REMARK 210 UBIQUITIN, 90% H2O/10% D2O; 4 MM REMARK 210 EKLF_UNL, 0.8 MM [U-100% 13C; U- REMARK 210 100% 15N] UBIQUITIN, 100% D2O; 4 REMARK 210 MM UBI_UNL, 0.8 MM [U-100% 13C; REMARK 210 U-100% 15N] EKLF, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 ALA B 2 REMARK 465 THR B 3 REMARK 465 ALA B 4 REMARK 465 GLU B 5 REMARK 465 THR B 6 REMARK 465 ALA B 7 REMARK 465 LEU B 8 REMARK 465 PRO B 9 REMARK 465 SER B 10 REMARK 465 ILE B 11 REMARK 465 SER B 12 REMARK 465 THR B 13 REMARK 465 LEU B 14 REMARK 465 THR B 15 REMARK 465 ALA B 16 REMARK 465 LEU B 17 REMARK 465 GLY B 18 REMARK 465 PRO B 19 REMARK 465 PHE B 20 REMARK 465 PRO B 21 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP B 38 -61.32 -151.94 REMARK 500 1 ARG A 74 103.44 60.47 REMARK 500 2 SER A 20 40.42 -96.32 REMARK 500 3 THR B 23 33.17 -98.33 REMARK 500 3 SER A 20 41.29 -96.82 REMARK 500 3 LEU A 73 -177.48 -66.37 REMARK 500 4 GLU A 51 -166.44 -70.05 REMARK 500 4 GLN A 62 -170.78 -67.65 REMARK 500 4 GLU A 64 27.86 48.32 REMARK 500 5 ALA B 36 78.56 -69.87 REMARK 500 5 MET B 39 -53.46 -136.52 REMARK 500 5 SER A 20 43.77 -95.11 REMARK 500 5 LYS A 33 -74.58 -85.66 REMARK 500 5 ASN A 60 70.04 59.54 REMARK 500 5 GLN A 62 -168.15 -74.70 REMARK 500 6 MET B 39 -66.03 -106.40 REMARK 500 6 ASN A 60 60.28 62.66 REMARK 500 6 ARG A 74 100.20 -162.48 REMARK 500 7 THR B 23 -65.62 -106.38 REMARK 500 7 ALA B 36 83.19 -62.65 REMARK 500 7 LYS A 33 -74.18 -75.75 REMARK 500 7 LEU A 50 70.57 -69.34 REMARK 500 7 ASN A 60 63.88 63.47 REMARK 500 7 GLN A 62 -169.34 -77.01 REMARK 500 8 ASP B 38 -40.62 -175.76 REMARK 500 8 LEU A 50 106.34 -59.96 REMARK 500 8 GLU A 51 -163.96 -58.92 REMARK 500 8 ASN A 60 39.96 72.73 REMARK 500 9 MET B 39 74.27 60.54 REMARK 500 9 ASP A 39 31.25 -97.55 REMARK 500 9 ASN A 60 68.80 67.22 REMARK 500 10 ASP B 38 34.70 -98.28 REMARK 500 10 LYS A 33 -70.64 -86.46 REMARK 500 10 ASP A 39 -44.60 -162.56 REMARK 500 10 LEU A 50 86.82 -60.36 REMARK 500 10 ASN A 60 30.71 72.46 REMARK 500 10 SER A 65 -178.36 -61.52 REMARK 500 11 ALA B 36 37.27 -97.74 REMARK 500 11 GLN B 37 -67.52 -93.10 REMARK 500 11 ASP B 38 32.00 -99.84 REMARK 500 11 MET B 39 90.58 60.43 REMARK 500 11 LEU A 8 67.23 -69.26 REMARK 500 11 THR A 9 81.50 53.31 REMARK 500 11 LEU A 50 77.68 -66.28 REMARK 500 11 ASP A 52 66.48 -69.94 REMARK 500 12 SER A 20 37.75 -97.72 REMARK 500 12 ASN A 60 76.45 55.83 REMARK 500 13 THR B 23 30.05 -98.70 REMARK 500 13 ALA B 36 77.62 -107.96 REMARK 500 13 THR A 22 -177.61 -60.16 REMARK 500 REMARK 500 THIS ENTRY HAS 78 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19399 RELATED DB: BMRB DBREF 2MBH B 2 40 UNP Q13351 KLF1_HUMAN 2 40 DBREF 2MBH A 1 76 UNP J3QS39 J3QS39_HUMAN 1 76 SEQADV 2MBH GLY B 0 UNP Q13351 EXPRESSION TAG SEQADV 2MBH SER B 1 UNP Q13351 EXPRESSION TAG SEQRES 1 B 41 GLY SER ALA THR ALA GLU THR ALA LEU PRO SER ILE SER SEQRES 2 B 41 THR LEU THR ALA LEU GLY PRO PHE PRO ASP THR GLN ASP SEQRES 3 B 41 ASP PHE LEU LYS TRP TRP ARG SER GLU GLU ALA GLN ASP SEQRES 4 B 41 MET GLY SEQRES 1 A 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 A 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 A 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 A 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 A 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 A 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY HELIX 1 1 THR B 23 ALA B 36 1 14 HELIX 2 2 THR A 22 GLY A 35 1 14 HELIX 3 3 LEU A 56 ASN A 60 5 5 SHEET 1 A 5 THR A 12 GLU A 16 0 SHEET 2 A 5 GLN A 2 THR A 7 -1 N ILE A 3 O LEU A 15 SHEET 3 A 5 THR A 66 LEU A 71 1 O LEU A 69 N LYS A 6 SHEET 4 A 5 GLN A 41 PHE A 45 -1 N ILE A 44 O HIS A 68 SHEET 5 A 5 LYS A 48 LEU A 50 -1 O LEU A 50 N LEU A 43 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000