PDB Short entry for 2MDI HEADER TRANSFERASE 10-SEP-13 2MDI TITLE SOLUTION STRUCTURE OF THE PP2WW MUTANT (KPP2WW) OF HYPB COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE SETD2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 2377-2430; COMPND 5 SYNONYM: HIF-1, HUNTINGTIN YEAST PARTNER B, HUNTINGTIN-INTERACTING COMPND 6 PROTEIN 1, HIP-1, HUNTINGTIN-INTERACTING PROTEIN B, LYSINE N- COMPND 7 METHYLTRANSFERASE 3A, SET DOMAIN-CONTAINING PROTEIN 2, HSET2, COMPND 8 P231HBP; COMPND 9 EC: 2.1.1.43; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HYPB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-32M KEYWDS WW DOMAIN, HYPB, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR Y.G.GAO,H.Y.HU REVDAT 2 14-JUN-23 2MDI 1 REMARK SEQADV REVDAT 1 10-SEP-14 2MDI 0 JRNL AUTH Y.G.GAO,H.YANG,J.ZHAO,Y.J.JIANG,H.Y.HU JRNL TITL AUTOINHIBITORY STRUCTURE OF THE WW DOMAIN OF HYPB/SETD2 JRNL TITL 2 REGULATES ITS INTERACTION WITH THE PROLINE-RICH REGION OF JRNL TITL 3 HUNTINGTIN. JRNL REF STRUCTURE V. 22 378 2014 JRNL REFN ISSN 0969-2126 JRNL PMID 24412394 JRNL DOI 10.1016/J.STR.2013.12.005 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, ARIA REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MDI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000103505. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.08 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 500 UM [U-99% 13C; U-99% 15N] REMARK 210 KPP2WW-1, 20 MM SODIUM PHOSPHATE- REMARK 210 2, 50 MM SODIUM CHLORIDE-3, 5%(W/ REMARK 210 V) SODIUM AZIDE-4, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D HNCO; 3D HNHA; 3D REMARK 210 C(CO)NH; 3D HCCH-TOCSY; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, CNS, ARIA, MOLMOL, REMARK 210 TOPSPIN REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG23 ILE A 15 H VAL A 16 1.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 15 -74.77 -41.71 REMARK 500 1 GLU A 28 45.72 -97.79 REMARK 500 1 ARG A 39 44.60 71.34 REMARK 500 1 THR A 47 -176.73 -57.10 REMARK 500 1 PRO A 51 -178.99 -57.57 REMARK 500 1 ALA A 55 70.19 59.92 REMARK 500 2 ILE A 15 -165.86 -62.51 REMARK 500 2 GLU A 28 44.46 -89.24 REMARK 500 2 THR A 47 -155.90 -85.12 REMARK 500 3 ILE A 15 -74.59 -35.53 REMARK 500 3 GLU A 28 46.39 -90.68 REMARK 500 4 ILE A 15 -168.14 -58.90 REMARK 500 4 GLU A 28 46.05 -94.89 REMARK 500 4 THR A 47 -160.29 -63.23 REMARK 500 4 PRO A 51 171.73 -58.30 REMARK 500 5 ILE A 15 -169.62 -69.20 REMARK 500 5 GLU A 28 44.84 -92.36 REMARK 500 5 THR A 47 -158.40 -65.99 REMARK 500 6 ILE A 15 -162.72 -59.36 REMARK 500 6 GLU A 28 43.70 -90.30 REMARK 500 6 THR A 47 -163.32 43.90 REMARK 500 6 ALA A 55 170.96 68.89 REMARK 500 7 ILE A 15 -167.86 -58.21 REMARK 500 7 GLU A 28 45.58 -91.06 REMARK 500 7 THR A 47 -161.84 -127.82 REMARK 500 7 ALA A 55 -85.92 -109.46 REMARK 500 8 ILE A 15 -171.88 -62.45 REMARK 500 8 GLU A 28 44.23 -89.02 REMARK 500 9 ILE A 15 -167.04 -61.73 REMARK 500 9 ASN A 20 -9.81 -57.85 REMARK 500 9 GLU A 28 44.67 -89.13 REMARK 500 9 THR A 47 -156.82 41.69 REMARK 500 9 ALA A 55 178.63 72.97 REMARK 500 10 ILE A 15 -164.56 -57.57 REMARK 500 10 PRO A 19 -9.22 -57.00 REMARK 500 10 GLU A 28 44.62 -90.81 REMARK 500 10 THR A 47 -160.47 -66.93 REMARK 500 11 ILE A 15 -75.36 -44.89 REMARK 500 11 GLU A 28 44.56 -90.13 REMARK 500 11 THR A 47 -155.66 -59.33 REMARK 500 11 PRO A 51 -178.77 -62.63 REMARK 500 12 ILE A 15 -71.59 -39.28 REMARK 500 12 GLU A 28 45.91 -96.15 REMARK 500 12 THR A 47 -161.08 -73.20 REMARK 500 13 ILE A 15 -164.23 -64.24 REMARK 500 13 GLU A 28 43.50 -95.53 REMARK 500 13 THR A 47 -158.57 -96.52 REMARK 500 13 PRO A 51 -175.85 -64.08 REMARK 500 13 ALA A 55 74.43 61.92 REMARK 500 14 ILE A 15 -72.81 -40.31 REMARK 500 REMARK 500 THIS ENTRY HAS 55 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19487 RELATED DB: BMRB REMARK 900 RELATED ID: 2MDC RELATED DB: PDB DBREF 2MDI A 3 56 UNP Q9BYW2 SETD2_HUMAN 2377 2430 SEQADV 2MDI GLY A 1 UNP Q9BYW2 EXPRESSION TAG SEQADV 2MDI SER A 2 UNP Q9BYW2 EXPRESSION TAG SEQADV 2MDI ALA A 11 UNP Q9BYW2 LYS 2385 ENGINEERED MUTATION SEQADV 2MDI ALA A 12 UNP Q9BYW2 PRO 2386 ENGINEERED MUTATION SEQADV 2MDI ALA A 13 UNP Q9BYW2 LYS 2387 ENGINEERED MUTATION SEQRES 1 A 56 GLY SER ASP LEU PRO PRO PRO SER PRO PRO ALA ALA ALA SEQRES 2 A 56 THR ILE VAL LEU PRO PRO ASN TRP LYS THR ALA ARG ASP SEQRES 3 A 56 PRO GLU GLY LYS ILE TYR TYR TYR HIS VAL ILE THR ARG SEQRES 4 A 56 GLN THR GLN TRP ASP PRO PRO THR TRP GLU SER PRO GLY SEQRES 5 A 56 ASP ASP ALA SER HELIX 1 1 ALA A 11 ILE A 15 5 5 SHEET 1 A 3 LYS A 22 ARG A 25 0 SHEET 2 A 3 ILE A 31 HIS A 35 -1 O TYR A 32 N ALA A 24 SHEET 3 A 3 GLN A 40 GLN A 42 -1 O GLN A 40 N HIS A 35 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000