PDB Short entry for 2MIU HEADER PROTEIN BINDING 20-DEC-13 2MIU TITLE STRUCTURE OF FHL2 LIM ADAPTOR AND ITS INTERACTION WITH SKI COMPND MOL_ID: 1; COMPND 2 MOLECULE: FOUR AND A HALF LIM DOMAINS PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIM DOMAIN (UNP RESIDUES 1-98); COMPND 5 SYNONYM: FHL-2, LIM DOMAIN PROTEIN DRAL, SKELETAL MUSCLE LIM-PROTEIN COMPND 6 3, SLIM-3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FHL2, DRAL, SLIM3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-5X-3 KEYWDS FHL2, LIM DOMAIN, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.YANG,Y.SUN,E.E.MEDRANO,X.TIAN,M.A.WEISS REVDAT 2 14-JUN-23 2MIU 1 REMARK LINK REVDAT 1 15-JAN-14 2MIU 0 JRNL AUTH Y.YANG,Y.SUN,E.E.MEDRANO,X.TIAN,M.A.WEISS JRNL TITL STRUCTURE OF FHL2 LIM ADAPTOR AND ITS INTERACTION WITH SKI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, X-PLOR NIH REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MIU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000103664. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.05 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50 MM SODIUM PHOSPHATE, 50 MM REMARK 210 SODIUM CHLORIDE, 0.5-0.8 MM [U- REMARK 210 13C; U-15N] PROTEIN, 93% H2O/7% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 C(CO)NH; 3D H(CCO)NH; 3D HCCH- REMARK 210 TOCSY; 3D HNCO; 3D 1H-13C NOESY; REMARK 210 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : PIPP, INSIGHT II, X-PLOR NIH, REMARK 210 XWINNMR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H HIS A 8 O PRO A 26 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 7 102.91 -59.33 REMARK 500 1 LYS A 18 170.55 -51.56 REMARK 500 1 GLU A 41 -18.58 -45.55 REMARK 500 1 ASP A 50 23.85 -74.25 REMARK 500 1 ASP A 58 11.90 46.97 REMARK 500 1 ARG A 72 16.79 49.73 REMARK 500 1 ASP A 77 13.49 51.99 REMARK 500 1 THR A 90 -14.78 -47.86 REMARK 500 2 LYS A 18 170.88 -51.68 REMARK 500 2 GLU A 41 -19.37 -45.92 REMARK 500 2 ASP A 58 12.01 49.23 REMARK 500 2 ARG A 72 16.81 48.45 REMARK 500 2 ASP A 77 13.89 50.11 REMARK 500 2 THR A 90 -16.46 -46.51 REMARK 500 3 GLU A 3 -179.36 -60.27 REMARK 500 3 PHE A 5 65.67 -119.86 REMARK 500 3 CYS A 7 102.84 -59.58 REMARK 500 3 LYS A 18 172.47 -50.75 REMARK 500 3 GLU A 41 -17.61 -43.35 REMARK 500 3 ASP A 58 13.13 54.01 REMARK 500 3 ARG A 72 16.92 45.78 REMARK 500 3 ASP A 77 13.17 52.30 REMARK 500 3 THR A 90 -15.11 -47.45 REMARK 500 4 PHE A 5 65.45 -118.45 REMARK 500 4 CYS A 7 103.12 -59.41 REMARK 500 4 ASN A 11 18.38 55.24 REMARK 500 4 LYS A 18 170.93 -51.15 REMARK 500 4 GLU A 41 -18.70 -44.77 REMARK 500 4 ASP A 50 20.32 -73.13 REMARK 500 4 ASP A 58 11.93 52.29 REMARK 500 4 ARG A 72 16.55 48.68 REMARK 500 4 ASP A 77 13.74 48.33 REMARK 500 4 THR A 90 -15.43 -47.14 REMARK 500 5 GLU A 3 172.10 -46.25 REMARK 500 5 LYS A 18 170.55 -50.40 REMARK 500 5 GLU A 41 -18.12 -47.12 REMARK 500 5 ASP A 58 12.18 50.32 REMARK 500 5 ARG A 72 16.87 51.34 REMARK 500 5 ASP A 77 13.37 52.52 REMARK 500 5 THR A 90 -16.58 -46.65 REMARK 500 6 GLU A 3 171.82 -45.81 REMARK 500 6 PHE A 5 65.91 -110.48 REMARK 500 6 CYS A 7 103.46 -59.19 REMARK 500 6 ASN A 11 18.40 55.28 REMARK 500 6 LYS A 18 170.39 -57.54 REMARK 500 6 GLU A 41 -18.66 -44.55 REMARK 500 6 ASP A 50 27.87 -74.69 REMARK 500 6 ASP A 58 13.38 55.38 REMARK 500 6 ARG A 72 16.89 47.39 REMARK 500 6 ASP A 77 13.93 49.65 REMARK 500 REMARK 500 THIS ENTRY HAS 185 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 7 SG REMARK 620 2 CYS A 10 SG 112.9 REMARK 620 3 CYS A 28 SG 114.7 117.6 REMARK 620 4 CYS A 31 SG 116.8 93.8 98.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 40 SG REMARK 620 2 CYS A 43 SG 111.3 REMARK 620 3 HIS A 62 ND1 104.3 109.8 REMARK 620 4 CYS A 65 SG 112.8 98.5 120.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 68 SG REMARK 620 2 CYS A 71 SG 111.5 REMARK 620 3 CYS A 89 SG 99.7 115.6 REMARK 620 4 CYS A 92 SG 127.3 95.9 107.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19694 RELATED DB: BMRB DBREF 2MIU A 1 98 UNP Q14192 FHL2_HUMAN 1 98 SEQRES 1 A 98 MET THR GLU ARG PHE ASP CYS HIS HIS CYS ASN GLU SER SEQRES 2 A 98 LEU PHE GLY LYS LYS TYR ILE LEU ARG GLU GLU SER PRO SEQRES 3 A 98 TYR CYS VAL VAL CYS PHE GLU THR LEU PHE ALA ASN THR SEQRES 4 A 98 CYS GLU GLU CYS GLY LYS PRO ILE GLY CYS ASP CYS LYS SEQRES 5 A 98 ASP LEU SER TYR LYS ASP ARG HIS TRP HIS GLU ALA CYS SEQRES 6 A 98 PHE HIS CYS SER GLN CYS ARG ASN SER LEU VAL ASP LYS SEQRES 7 A 98 PRO PHE ALA ALA LYS GLU ASP GLN LEU LEU CYS THR ASP SEQRES 8 A 98 CYS TYR SER ASN GLU TYR SER HET ZN A 301 1 HET ZN A 302 1 HET ZN A 303 1 HETNAM ZN ZINC ION FORMUL 2 ZN 3(ZN 2+) HELIX 1 1 CYS A 28 ALA A 37 1 10 HELIX 2 2 CYS A 89 SER A 98 1 10 SHEET 1 A 2 ILE A 20 ARG A 22 0 SHEET 2 A 2 SER A 25 TYR A 27 -1 O SER A 25 N ARG A 22 SHEET 1 B 2 ASN A 38 THR A 39 0 SHEET 2 B 2 PRO A 46 ILE A 47 -1 O ILE A 47 N ASN A 38 SHEET 1 C 2 ASP A 53 TYR A 56 0 SHEET 2 C 2 ARG A 59 HIS A 62 -1 O TRP A 61 N LEU A 54 SHEET 1 D 2 ALA A 81 ALA A 82 0 SHEET 2 D 2 LEU A 87 LEU A 88 -1 O LEU A 88 N ALA A 81 LINK SG CYS A 7 ZN ZN A 301 1555 1555 2.31 LINK SG CYS A 10 ZN ZN A 301 1555 1555 2.30 LINK SG CYS A 28 ZN ZN A 301 1555 1555 2.30 LINK SG CYS A 31 ZN ZN A 301 1555 1555 2.30 LINK SG CYS A 40 ZN ZN A 302 1555 1555 2.30 LINK SG CYS A 43 ZN ZN A 302 1555 1555 2.30 LINK ND1 HIS A 62 ZN ZN A 302 1555 1555 2.00 LINK SG CYS A 65 ZN ZN A 302 1555 1555 2.30 LINK SG CYS A 68 ZN ZN A 303 1555 1555 2.31 LINK SG CYS A 71 ZN ZN A 303 1555 1555 2.30 LINK SG CYS A 89 ZN ZN A 303 1555 1555 2.30 LINK SG CYS A 92 ZN ZN A 303 1555 1555 2.30 SITE 1 AC1 4 CYS A 7 CYS A 10 CYS A 28 CYS A 31 SITE 1 AC2 4 CYS A 40 CYS A 43 HIS A 62 CYS A 65 SITE 1 AC3 4 CYS A 68 CYS A 71 CYS A 89 CYS A 92 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000