PDB Short entry for 2MJC HEADER METAL BINDING PROTEIN 03-JAN-14 2MJC TITLE ZN-BINDING DOMAIN OF EUKARYOTIC TRANSLATION INITIATION FACTOR 3, TITLE 2 SUBUNIT G COMPND MOL_ID: 1; COMPND 2 MOLECULE: EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 153-176; COMPND 5 SYNONYM: EIF3G, EUKARYOTIC TRANSLATION INITIATION FACTOR 3 RNA- COMPND 6 BINDING SUBUNIT, EIF-3 RNA-BINDING SUBUNIT, EUKARYOTIC TRANSLATION COMPND 7 INITIATION FACTOR 3 SUBUNIT 4, EIF-3-DELTA, EIF3 P42, EIF3 P44; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EIF3G, EIF3S4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX-6P1 KEYWDS ZINC-BINDING DOMAIN, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR M.AL-ABDUL-WAHID,M.MENADE,J.XIE,G.KOZLOV,K.GEHRING REVDAT 3 14-JUN-23 2MJC 1 REMARK SEQADV LINK REVDAT 2 27-APR-16 2MJC 1 ATOM DBREF REMARK SEQADV REVDAT 1 07-JAN-15 2MJC 0 JRNL AUTH M.AL-ABDUL-WAHID,M.MENADE,J.XIE,G.KOZLOV,K.GEHRING JRNL TITL SOLUTION NMR STRUCTURE OF THE ZN-BINDING DOMAIN OF JRNL TITL 2 EUKARYOTIC TRANSLATION INITIATION FACTOR 3, SUBUNIT G JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, XPLOR-NIH REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (XPLOR-NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MJC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JAN-14. REMARK 100 THE DEPOSITION ID IS D_1000103682. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 25 REMARK 210 PH : 6.3 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 10 MM HEPES, 50 MM SODIUM REMARK 210 CHLORIDE, 1 MM ZINC CHLORIDE, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D CBCA(CO)NH; 3D HNCACB; 3D 1H REMARK 210 -13C NOESY; 3D HCCH-TOCSY; 3D REMARK 210 HNHB; 3D HNHA; 3D 1H-15N NOESY; REMARK 210 3D 1H-15N TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, XPLOR-NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-15 REMARK 465 RES C SSSEQI REMARK 465 PRO A 2 REMARK 465 LEU A 3 REMARK 465 GLY A 4 REMARK 465 SER A 5 REMARK 465 LYS A 6 REMARK 465 GLY A 7 REMARK 465 GLN A 8 REMARK 465 PRO A 33 REMARK 465 MET A 34 REMARK 465 GLN A 35 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 15 -38.38 -130.79 REMARK 500 1 HIS A 20 142.14 178.61 REMARK 500 1 TRP A 21 -176.85 -50.58 REMARK 500 1 ARG A 24 32.46 -89.77 REMARK 500 1 TYR A 27 49.93 -149.48 REMARK 500 1 ASP A 29 0.08 -60.57 REMARK 500 1 THR A 30 22.26 -79.81 REMARK 500 2 CYS A 13 -171.71 -61.35 REMARK 500 2 HIS A 20 139.67 -179.00 REMARK 500 2 TRP A 21 -171.82 -54.76 REMARK 500 2 ASP A 29 -0.88 -59.94 REMARK 500 3 ILE A 10 53.54 -146.41 REMARK 500 3 HIS A 20 141.77 -178.14 REMARK 500 3 TRP A 21 174.55 -52.13 REMARK 500 3 THR A 30 -79.93 -82.62 REMARK 500 4 ILE A 15 -37.80 -130.74 REMARK 500 4 HIS A 20 145.12 178.57 REMARK 500 4 TRP A 21 -173.25 -58.36 REMARK 500 4 THR A 23 1.60 -67.66 REMARK 500 4 ARG A 24 33.01 -143.78 REMARK 500 4 TYR A 27 59.73 -150.17 REMARK 500 4 LYS A 28 22.25 -78.71 REMARK 500 4 ASP A 29 -3.64 -58.17 REMARK 500 5 ILE A 15 -44.40 -144.95 REMARK 500 5 LYS A 17 69.51 60.51 REMARK 500 5 HIS A 20 141.20 179.61 REMARK 500 5 TRP A 21 -169.02 -53.82 REMARK 500 5 PRO A 26 21.93 -73.71 REMARK 500 5 TYR A 27 41.20 -150.16 REMARK 500 5 ASP A 29 6.89 -67.64 REMARK 500 5 THR A 30 30.72 -79.76 REMARK 500 6 CYS A 13 -161.32 -62.35 REMARK 500 6 ARG A 14 13.39 -149.80 REMARK 500 6 ILE A 15 -34.94 -131.61 REMARK 500 6 PRO A 26 24.99 -74.11 REMARK 500 6 TYR A 27 38.45 -150.21 REMARK 500 6 ASP A 29 1.77 -64.03 REMARK 500 6 THR A 30 52.81 -155.61 REMARK 500 6 LEU A 31 87.10 -67.97 REMARK 500 7 CYS A 16 -11.00 -142.41 REMARK 500 7 HIS A 20 155.75 179.86 REMARK 500 7 TRP A 21 -110.24 -52.42 REMARK 500 7 THR A 22 -43.34 -148.89 REMARK 500 7 PRO A 26 26.95 -73.27 REMARK 500 7 TYR A 27 33.29 -150.36 REMARK 500 7 ASP A 29 -3.36 -57.72 REMARK 500 7 THR A 30 -80.52 -79.90 REMARK 500 8 ILE A 10 93.23 37.79 REMARK 500 8 ILE A 15 -41.21 -130.93 REMARK 500 8 HIS A 20 142.52 176.10 REMARK 500 REMARK 500 THIS ENTRY HAS 100 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 13 SG REMARK 620 2 CYS A 16 SG 109.3 REMARK 620 3 HIS A 20 NE2 116.9 98.7 REMARK 620 4 CYS A 25 SG 89.7 124.7 118.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19716 RELATED DB: BMRB DBREF 2MJC A 6 35 UNP O75821 EIF3G_HUMAN 150 179 SEQADV 2MJC PRO A 2 UNP O75821 EXPRESSION TAG SEQADV 2MJC LEU A 3 UNP O75821 EXPRESSION TAG SEQADV 2MJC GLY A 4 UNP O75821 EXPRESSION TAG SEQADV 2MJC SER A 5 UNP O75821 EXPRESSION TAG SEQRES 1 A 34 PRO LEU GLY SER LYS GLY GLN LYS ILE VAL SER CYS ARG SEQRES 2 A 34 ILE CYS LYS GLY ASP HIS TRP THR THR ARG CYS PRO TYR SEQRES 3 A 34 LYS ASP THR LEU GLY PRO MET GLN HET ZN A 300 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 LYS A 28 GLY A 32 5 5 LINK SG CYS A 13 ZN ZN A 300 1555 1555 2.57 LINK SG CYS A 16 ZN ZN A 300 1555 1555 2.23 LINK NE2 HIS A 20 ZN ZN A 300 1555 1555 2.37 LINK SG CYS A 25 ZN ZN A 300 1555 1555 2.52 SITE 1 AC1 5 CYS A 13 CYS A 16 HIS A 20 CYS A 25 SITE 2 AC1 5 PRO A 26 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000